LOC110510132 (rin1)


Basic Information

Item Value
gene id LOC110510132
gene name rin1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34227307 ~ 34236487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040405.1
TTGTAGAGGCGAATTTCCCATTAAAAATACTGTATTCAGGGCCTGCATTGTAATTATGTTTAAGAGGCGAATTTCCCTTTGAAAATACTGTTTCAATTGAATTTCCGCAACGTGGTGACGGGCGCAGGCGTATTTAACCTTGGTTCAGGTTTGTTTCTCTCCCAAGTGTGAATGAAAAATATACGGAAGACAGCAGAGGAGTGCCAGGAACTTCTGAACTACAGCTTCACAGAGACTGGAGAGTCCCAGACAGACATCATGACGTATCCAGAGATCTAGGACTATTACATTCTCTATACTTTTGAAGTTTCAATGACATTTGGAAATTCAGGGATCAGATGGGATTTACAGTAGGCTATTTAGAATAATCTCTGTCACATTTTAAGGACGACAGGGGATCGGGAGATGAAGGTAAATTATGTCATGTCATTtatttgaaagtgtaaaacaAGGAACAGTTGCGAATATTTGTATGATTAGTGAAATCACGAAACCTGGCACTCGTTAACTGAAGGTATGCAAGAAGACCGCAGATCAAAGAAGTGCCGCGCACAGAGTGGTACAGATCGAGCAGCACGCAAGATGCAGGAGGACCCGGTGTATGATTTCCCTGAGCCGGTAGGGAAGCCGATAGGAGAGAGGCGGGCTTGTCTTCAGCGTAGCTCCCTGAAGAGCATCAGTGTGCTGGACCGTCTGCTTCTCACACACTCCGTCTGGCTGCAGCTGTCCATCAACTCTGCTACCGCTCTGCACATCCTACAGAGGGAGCCGCCTGGGACCTTTCTAGTGCGCAGGTCCAACACCTCGCAGAAGAAAGTGCTGTGTGTCAGGCTTGCAGATGACTGCCTCCCCTCCTTTTTCAAACAATTTGTCATCCAGGAATTGGACTCCACTTTCTCCTTGGAGAGAGCTGCTATCAGTTTCCCTGACCTCTGCCGGCTCATCGCCTTCTACTGTGTTAGCCGGGATGTGTTGCCCTTCCCCCTGGAGCTCCCTGAGGCCATAGTCAAGGCTTCATCCCACAAACAGCTGGAATCCATCTCCCACATGGGAGTGGAGTTCTGGAGCTCGCCGCTGAACTTCAGAGGTCCACGCAATGGGCCCCCACCAGTGGAGGAGGCACCGCTGCCCCCTAGCCCCACCCCTGAGGATTGTGCCACACCCGAGGAGAGCCCCACCCTGTTTCAAGAGTTCTGCTCCATCCAAACACGCAGCCCCCGGGAGCTGAACTGTGGGGCAGCAGGCCAAGGGGCTCTCTGTTTCATCAACCCACTCTTCCTGCAGTTCCAGACTGCACTGCACAGACGCCGCCACCAGTTCAAACGCAGCCTCAAGGTGCGTGTCTCCACTGAGAACTCTAGCCCATTGTCCCCACCATttgctcctccccctcccccacctctgcTGGCCAAGAAAAAGAGCAAGAAGGTCCATCAGGCCAGTAGAGCAGTGGAGGCCAgagtggagggtgagggagggacagCACCCGTTCAGGAGGACTCAGACTACTTGCAGCCATGCTTGGTTCTCCCAGTTCTTCCAAAAAAGACCAGGGTCACACCCACACTGTCTCCCACTGCAGAGGAGGAGGACTACCATGTGCCCATAGGTCTCCTGCAGGGACTGGGCCAGGAGAAAtgaggtgagggggaggaggtgagtgAGGAGGTGGATCTCTTGCTGGAGCAGAGATATGCTCCCTCCCTGAGTGAGCTGGACAGCAGCAGTTCCCTCAGCAGcttggaggagacagaggagaaccCAGAGCGACCTCCCCTCACCAGGGGAACAAGTAACCCCTCTCCCCCATGCACCTCTCCCGCTCGTCAGCCCGTCTCAGCCTTGCGCAAGCTTAGTGCAGCTTTTGTGTCCTTCTTTGTGCCTGAGAAGCGTGTGGCGAGGCTGGTGGAGGACCTGTCCCGTGACAAGAGGACTGCGTTTGGTGTCCTGGTGCAGGACTTCCTCAGGCAGCAGCGCGAGGTGATCAAGCCTCAGTGCCAGAGATCTGGCATAGAGCTACTGCACGGCATCCGTCTCTTCCTCTCCCAGGCCAAGACCTTCCTGCTGGACTGTGGAGACCTACAGCCCCCCATTGAGACCATGGTGCATGATGATGAGAAAGACCTGGTGCTGGAGAAAGCCATGTTCCGCTGTGTGCTGAAACCTTTGAAAGGACAGATAGATGGGACACTGCAAACTTTGCATGAGCGAGACCGCTCCACCCAAAGCATGGCAGAGAGCCTGGCTAAGGCCAGGGGAAAGACCCCGTTGGAGTGTTTTGGAGTGCGGGTGGGAGTGCCGGATGCTGCCGATGTGGAGAAGGTGCTGCAGAAGTTAGCTGTCATGAGGCGGGCATACTCTCCCATTGACAAGGTTGTGCTGCTTCTGCAGGTCTGCAAGCTCATCTATAAAGCCATGAAGGACAATTCAGGCCAGGAGTTCGGTGCAGATGACTTCCTGCCAGCCTTGTCCTATGTCCTCGTACAGTGTAACATGCCTGAGCTGTCTGTGGAGGTGGAGTACATGATGGAACTGCTGGAGCAATCATGGCTCAAAGGGGAGGGTGGGTACTACCTGACCAGTGTGTATGCCAGCCTGTGCCTGATCCAGAGCAAGCCTGAAGTAGTACCCTCCAGTGGGCTGACCCGCGAGGCCAGAGACTCTTTGAAAGACTGGAGCCGGCGCCGGAGCCTCCAGGCGCAAAGCCAGAAAAACTTACGACAGCAACTGAGGTGTGTCAGGGTTCTGTTTCAAGACGGAGAGAACAGCTGGATGAAAACCCTGCAGTGGAGGGCAGGAGTTAGTGGGGGGGCCCTGACCCAGCTCTGTGCTGCTAAATTTGGGGTGGACAACCCAGAACTGTACAAACTGTACTGGCGGAGTGAGGGGGAGATCAAAGACCTCCCAACACAGGCCCAGATCCAGGACCTACAGGGCCAAGGCAGCAGTGGGACACCCCTCATATACCAGCAAGCCAACCAGGATCAACTCAAGACTCGCAAACAGGAGACGGTGGACCTTATGGGATTACCTTGAGAGGTCCACTTTGGTATCCACACATTATTGACCGATGTTCTTAAACCACTCAACTGCTAGAAATAATTGCTTTGTACTTTATTAAACTATTTAAATGAAAAATGCCAACATAGTCTAACTTTCCAGATTACCAGAAGCGCGCGGCCCATTGGAGATTCATCTCGCAAATCTAGTGCGAAGGCATTTTAGAAACATTGCCCCTATAGCTAATACCGGACACTCATTCATTCTTCATCGCGCAGTCTTCTAAACTCCCGACTCCATTTAATGCCaagatgtttatttttatttgtgaTTATACTTTTGTAATGCTTTTTGTGACGTAGATCATAATTAGTTAGTCTCAGGTTGCGTGAACCTCGTAATGTTACGTGGAAAATGGGATGCAGAATTAAATGTATATCACACTCGAACAAATGCGACCAGTTATTTTTCGTATTTGCATTTCTATTCACTAACAAATGCGAGTGAACTGCTGGCACGTTAGAGCCCACTGAATGTCCGCCAACGTTAGCTTGAAACAATTTGTGTTTACCTTTCCACAACACACGGAGTCGAAAAGGGATTTGTCCATGTTGAAGTAAAACTGACAGTCGGCAAACTCAGCATTTCAACAAACAGAAAGGGCAGACACGGGATAGCTACGTCGAATAATGATATATTCATCTCCATGTCCGTTGACACAAACTCCGTATATGTCTGTGTTGCAGCTCGAGAATCGGGATGTTAGATTTACTCagtggatttattttttattaaaatgtaACAAAAATCAGGCCCTATTCATTTCTACGTACTTTCAATTCGGACCTCGTACATGGACAGAAAATGTCGTAGTTGGTACGCAAAATGCGTGCATGTTGGCAGGTCTGAGATTGCAAGGcaatgaaaaataaatacaaagcTCTGTGTAAATTATATTCCAATGTGTACCAGTTTAGTATGCAGCTGATTACACAAGGTATCTGAGATATTTTTCATAACAAAAAACAGACATCGGTCTTATTGTTTTAATCACATGTATTTTTGTATAGGTTGTTTCTCAACAACCTAACCAAGAGAGAGACTTATAGTACTGTGGACCCTTTGACAATGCTTTGCCTTTGACCATGTCACAGTGGTGGCTTCAAGTGCCCTGGACACAAGGGACAAAAAGCTTATCATATGATTAATATTATTTGGAAGGAGTTCTATAAAAAGAACATTGTCAAGA
>TU2488771
AGAGGACTGCGTTTGGTGTCCTGGTGCAGGACTTCCTCAGGCAGCAGCGCGAGGTGATCAAGCCTCAGTGCCAGAGATCTGGCATAGAGCTACTGCACGGCATCCGTCTCTTCCTCTCCCAGGCCAAGACCTTCCTGCTGGACTGTGGAGACCTACAGCCCCCCATTGAGACCATGGTGCATGATGATGAGAAAGACCTGGTGCTGGAGAAAGCCATGTTCCGCTGTGTGCTGAAACCTTTGAAAGGACAGATAGATGGGACACTGCAAACTTTGCATGAGCGAGACCGCTCCACCCAAAGCATGGCAGAGAGCCTGGCTAAGGCCAGGGGAAAGACCCCGTTGGAGTGTTTTGGAGTGCGGGTGGGAGTGCCGGATGCTGCCGATGTGGAGAAGGTGCTG
>TU2488769
GTTTTAATCACATGTATTTTTGTATAGGTTGTTTCTCAACAACCTAACCAAGAGAGAGACTTATAGTACTGTGGACCCTTTGACAATGCTTTGCCTTTGACCATGTCACAGTGGTGGCTTCAAGTGCCCTGGACACAAGGGACAAAAAGCTTATCATATGATTAATATTATTTGGAAGGAGTTCTATAAAAAGAACATTGTCAAGACAAAGAGCAATTGAAATGTGTCAACAAAAGCTTAATAAGACTGTGGTTGGGATTTGATTGACACAGTTGATGGTGAACCGTGTAGTCACCCTTAAGTCACTTAGCTTTTTTTAATACTCTGGCCTTGTTTCAAACTGACTTCAAGCTCCTACCACTAGGTCCTTTCAACACCAGATTGTTTACACTGTTCCTATCCTTCCTGATATTGGAAGGGGGAAATAACTGTATAATGATAGGGACTTAACGTAGTTTGAAACTGTGCCTCGGGGTTGAATGTCTCCCAATTACAGCCATAACCACATGTGCATTCTACCCTTGACTGATTTAGGCATTTGACAGTGAAAGATCCTTTTTTATGACAAGTCCACACAGACCAGGGATGTTTCAGGCAGTAGCATGTCTGGGTCTTAGCAGTGCTTTGACTGTATCTGCACTGTTCACTCAGCACCAGCAGGGGGCATCCCTCTTGTTCAGCTCTAGCAGGTGGGCCTCCACCTCCTCGGCGTCATCTGCAAACCGTTCTGTGAAGGAGCGGATCAGTCCGGCTGCACTACCCTCGTATTCCACCAGCTCC

Function

symbol description
rin1 Predicted to enable small GTPase binding activity. Predicted to be involved in endocytosis; regulation of catalytic activity; and signal transduction. Predicted to act upstream of or within associative learning; memory; and negative regulation of synaptic plasticity. Located in cytoplasm and plasma membrane.

NR:

description
dipeptidyl peptidase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040405.1 False 4249 mRNA 0.50 10 34227307 34235892
TU2488771 False 401 TUCP 0.57 2 34231656 34232183
TU2488769 True 780 lncRNA 0.44 2 34235687 34236487

Neighbor

gene id symbol gene type direction distance location
pacs1a LOC106563701 coding upstream 32090 34178831 ~ 34195217 (+)
bbs1 bbs1 coding upstream 63357 34156709 ~ 34163950 (+)
cfbl cfb coding upstream 71868 34145403 ~ 34155439 (+)
LOC110510125 LOC106563697 coding upstream 91754 34105921 ~ 34135553 (+)
LOC110510124 LOC106602987 coding upstream 138243 33845835 ~ 34089064 (+)
LOC110510134 LOC106563705 coding downstream 43720 34279612 ~ 34290554 (+)
LOC110509380 NA coding downstream 63993 34299885 ~ 34303347 (+)
LOC110510136 LOC106602966 coding downstream 93289 34329181 ~ 34335741 (+)
LOC118945289 NA coding downstream 158098 34393990 ~ 34397166 (+)
LOC110510141 LOC106563694 coding downstream 211947 34447839 ~ 34455631 (+)
G2177340 NA non-coding upstream 30493 34196332 ~ 34196814 (+)
G2177301 NA non-coding upstream 131319 34084804 ~ 34095988 (+)
G2177149 NA non-coding upstream 377828 33849088 ~ 33849479 (+)
G2177134 NA non-coding upstream 404677 33822402 ~ 33822630 (+)
G2177132 NA non-coding upstream 406105 33820931 ~ 33821202 (+)
G2177365 NA non-coding downstream 14802 34250694 ~ 34250973 (+)
G2177367 NA non-coding downstream 16289 34252181 ~ 34252783 (+)
G2177368 NA non-coding downstream 16934 34252826 ~ 34253102 (+)
G2177371 NA non-coding downstream 21089 34256981 ~ 34257207 (+)
G2177373 NA non-coding downstream 24571 34260463 ~ 34265777 (+)
cxxc5a LOC106563628 other upstream 991772 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2101229 32115629 ~ 32150579 (+)
G2175413 NA other upstream 2189571 32037047 ~ 32037736 (+)
LOC110509422 LOC106563560 other upstream 2326071 31820484 ~ 31908546 (+)
G2177424 NA other downstream 123732 34359624 ~ 34460769 (+)
LOC110510159 LOC106563679 other downstream 567047 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1269956 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1615762 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1676598 35912490 ~ 35925031 (+)
LOC110510132 rin1 other upstream 3504 34227307 ~ 34236487 (+)

Expression


Co-expression Network