LOC110510135 (LOC106563696)


Basic Information

Item Value
gene id LOC110510135
gene name LOC106563696
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34338911 ~ 34342460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591482.2
CGAAAAGGGTGGGAGTTTGACCTCCTCTCACATTTTGTGCCCTCTAAAAAACTTGGGATTTCAAGGAATTGTGGGTTAACCTATACATTTAACAGAATGGAAGCGTACATATGATTTTCGCATATTATGGACACTTTGGCCACTATAAAGCTGTAAAAGGTTTATGTACTTCTTTACATAAGTTATATCTTCGGTGCTTCAACAACCAAGCTCATTGACCACGATGCGCAATTCTCTGCGCTTGGTGTCGGGGCGTTGGAATGCCAAGACATCTTGAACCGGTGGGCAAAGACCTTCGGTTAGGGATCAGCCCGTATGGAGAGACCTCTCAGTTAGTAGCCTTCAATCTAAGCACCCAGTGTCAAGACGTTGCCGCGACACAGAAGTCCCCGTTTATTCCCCAAGTCTCCGGATACGCAGCTGCGCTCCAAAACCACTACGGCGGTCACTTCGGTTCACATGAATATAGAGCTATTGACTCCATGGATTTTTCGATCAGGTATCGCACTTCAGACATTGTCGATATAGCAACAAGGGATGCTGAGCACGGATTTTTCAGCCGCACCTCAACAGAAAGTTTGCGAATGCCCCTGATGATCTCTGAAAACCCGATGCACCCTCTATTTCCATCTATATACGACCAGAGCGCATCCCCAAATGGATACACAGCGAACCGCAGGGCGCATGTGGGTTCACAGGGAGACATATACGTGGGAGCAGATCCACATCAACCTGTCTCCAGTCCTCACCCACACGTCAGTGCTACCCAGCTTCACTTTGATCCCAATGTGGAGATGGGTATGAGAGTAGCAACACAGAATGGTAACGGTGCTTTCTTTCGATACATGCGACAGCCCTCTAAGCAGGATGTCACCTGTAAATGGATAGCTGAGAATCAGACGAATCAACCCCAAAAAACGTGCGGCAAGATGTTCTGCTCCTTGTTTGAACTGGTTACGCACGTCTCCATGGATCATGTCGGCGGTCCAGACCAGGGTCATCATACTTGCTTTTGGGAGGATTGTCCGAGAGAAGGCCAATCGTTTAAAGCAAAGTATAAATTAGTCAACCACATTCGTGTACACACTGGAGAAAAGCCATTCAATTGTCCGTTTCATGGTTGTGGGAAAATATTTGCCAGGTCGGAAAATTTGAAAATACATAAAAGGATTCATACAGGTGAGAAGCCCTTCAAATGCCATTTCGAAGGCTGTGACAGGCGGTTCGCAAATAGCAGCGACAGAAAAAAACACATGCACGTACATACCTCAGACAAGCCATATATGTGCAAGGTGTGTGACAAGGCCTACACTCATCCCAGCTCTCTGAGGAAACACTCGAAGGTTCACGAATCTCAAAGCTCAGGGACCTCCCCAACAGGAACCTCTGGATATGAGTCATCCACGCCACCTGCTCCGTGTAGACCTATGTCCTCAACCATCGAAGACTTGACAAAACCATCCATGCTGGTCAAGCATCATACGTCAATATTTAAAGAGGATCTCTCATCCAATTTGATTGAATGGTACGTTTGAAACGGTTAGAGTTAATAGTCCAAGTGAGAACACTAAATGTTTATATaattacccactgggcacactggttgaatcaacgttttttccacgtcatttcaattaaattgtGGCTGGTAGGCAGGAATTCAGGCCCATAGCATAGGTTTGCTCAGTTTTCAAGAAAAGTTCAGAAAACACAGCGTAGGCCTATGCTGAGCTGTAAATGCACCTTCATAAAATGCAGAGCAAATGCAATCAAATTGGAGTGATGTTTGTTCTATAGCCTCCCTAATGTTAGGAAAAGTCTGATCCTTGGAAAATACTGCACATTTACTACTGATTTACAGATGAAAATGTAGCCCACTGCACCAAAGCCTTTACATTCATAGACAGGCCTCCATATAAGCCTATTGATAAATGGACAAattattatttaaccaggtaggccagttgagaacaactcttaatttacaactgcgacctggccaagataaagcaaagcagtacgacaaaaacaacaacacagagttacacataaacaaacgtagagttaataacacaaaataaaataaaaatagaaaaatctatgtacagtgtgtgcaaatgtagaagagtaggttCATGAATACATGAATGGAAGAAAGACATACGAAATGAATCATCAAAAGCAACATATAGAAACCATAAAGTGCATAAAAAGAAAGGAAGTAACtttagagagaaaaaaaggaaacAGATAAAGGATGAAATTAAGTATTTGAGTAAACCAGTATTTTCATGTGTTGCTAGATTTTAACTCTGATTTCAGAATCAGTTCTAAGACAGAAAAAGATGGGCCTACTGTCATCCACATGGAATGTTGCCTTTTGCAAAGaacaatataaaaatgtatttttttaatttctCTATCTTAAAATATACTGTTTACAATATAATTCATACAATTGTATTTTTGTTGCAGTTTATTGTAATGTTGTTGTATAAATGTACAGATATAAGTGGTTATATATAAATCAATATGATTTAGGCATGCAGCTTTAGTCAACACTTCAATGAAAAACATGTTTATGGACATTTTGTACCTTTCTATTATGAGTGATGTTGAATCTAATAACTAGATACACTTGTATAGATTTTGGGGCTTTTCTTTTTTTAGATGTTGGATTTTGGAGTGGTAGCCTACCCTTTGCTAAATGATTTACAAGATCCAGCATTTGAGGACAAAGTAAAGTTGACAATCCTTTACGGCCCAGAAGACACAAACTATTCTTAAAGTGTTCAGTGGAACATCAAGGAAAATATTTTAAACAGGCAATTTAAATACATCTGGTATATGTTGTTCAGTTAGCCGAACTAGCATCagattcagatatttttttttaatgaaagctaaatgtaaaaaaacataGATCAAGGcaaagtgaaataaataacagAAAGCATAAAATAAGTTACATAAATCTGACCTATATTCAAAATGTGGCATTTAATTCACAGTTTGTTGATTTGTTGAAATGGATACTATCTATGTACTGCAGTGTATCACAAATTACCATTAAATTGGTAAAACTTT
>TU2489664
GCATCCCCAAATGGATACACAGCGAACCGCAGGGCGCATGTGGGTTCACAGGGAGACATATACGTGGGAGCAGATCCACATCAACCTGTCTCCAGTCCTCACCCACACGTCAGTGCTACCCAGCTTCACTTTGATCCCAATGTGGAGATGGGTATGAGAGTAGCAACACAGAATGGTAACGGTGCTTTCTTTCGATACATGCGACAGCCCTCTAAGCAGGATGTCACCTGTAAATGGATAGCTGAGAATCAGACGAATCAACCCCAAAAAACGTGCGGCAAGATGTTCTGCTCCTTGTTTGAACTGGTTACGCACGTCTCCATGGATCATGTCGGCGGTCCAGACCAGGGTCATCATACTTGCTTTTGGGAGGATTGTCCGAGAGAAGGCCAATCGTTTAAAGCAAAGTATAAATTAGTCAACCACATTCGTGTACACACTGGAGAAAAGCCATTCAATTGTCCGTTTCATGGTTGTGGGAAAATATTTGCCAGGTCGGAAAATTTGAAAATACATAAAAGGATTCATACAGGTTCACGAATCTCAAAGCTCAGGGACCTCCCCAACAGGAACCTCTGGATATGAGTCATCCACGCCACCTGCTCCGTGTAGACCTATGTCCTCAACCATCGAAGACTTGACAAAACCATCCATGCTGGTCAAGCATCATACGTCAATATTTAAAGAGGATCTCTCATCCAATTTGATTGAATGGTACGTTTGAAACGGTTAGAGTTAATAGTCCAAGTGAGAACACTAAATGTTTATATaattacccactgggcacactggttgaatcaacgttttttccacgtcatttcaattaaattgtGGCTGGTAGGCAGGAATTCAGGCCCATAGCATAGGTTTGCTCAGTTTTCAAGAAAAGTTCAGAAAACACAGCGTAGGCCTATGCTGAGCTGTAAATGCACCTTCATAAAATGCAGAGCAAATGCAATCAAATTGGAGTGATGTTTGTTCTATAGCCTCCCTAATGTTAGGAAAAGTCTGATCCTTGGAAAATACTGCACATTTACTACTGATTTACAGATGAAAATGTAGCCCACTGCACCAAAGCCTTTACATTCATAGACAGGCCTCCATATAAGCCTATTGATAAATGGACAAattattatttaaccaggtaggccagttgagaacaactcttaatttacaactgcgacctggccaagataaagcaaagcagtacgacaaaaacaacaacacagagttacacataaacaaacgtagagttaataacacaaaataaaataaaaatagaaaaatctatgtacagtgtgtgcaaatgtagaagagtaggttCATGAATACATGAATGGAAGAAAGACATACGAAATGAATCATCAAAAGCAACATATAGAAACCATAAAGTGCATAAAAAGAAAGGAAGTAACtttagagagaaaaaaaggaaacAGATAAAGGATGAAATTAAGTATTTGAGTAAACCAGTATTTTCATGTGTTGCTAGATTTTAACTCTGATTTCAGAATCAGTTCTAAGACAGAAAAAGATGGGCCTACTGTCATCCACATGGAATGTTGCCTTTTGCAAAGaacaatataaaaatgtatttttttaatttctCTATCTTAAAATATACTGTTTACAATATAATTCATACAATTGTATTTTTGTTGCAGTTTATTGTAATGTTGTTGTATAAATGTACAGATATAAGTGGTTATATATAAATCAATATGATTTAGGCATGCAGCTTTAGTCAACACTTCAATGAAAAACATGTTTATGGACATTTTGTACCTTTCTATTATGAGTGATGTTGAATCTAATAACTAGATACACTTGTATAGATTTTGGGGCTTTTCTTTTTTTAGATGTTGGATTTTGGAGTGGTAGCCTACCCTTTGCTAAATGATTTACAAGATCCAGCATTTGAGGACAAAGTAAAGTTGACAATCCTTTACGGCCCAGAAGACACAAACTATTCTTAAAGTGTTCAGTGGAACATCAAGGAAAATATTTTAAACAGGCAATTTAAATACATCTGGTATATGTTGTTCAGTTAGCCGAACTAGCATCagattcagatatttttttttaatgaaagctaaatgtaaaaaaacataGATCAAGGcaaagtgaaataaataacagAAAGCATAAAATAAGTTACATAAATCTGACCTATATTCAAAATGTGGCATTTAATTCACAGTTTGTTGATTTGTTGAAATGGATACTATCTATGTACTGCAGTGTATCACAAATTACCATTAAATTGGTAAAACTTTG

Function

NR:

description
zinc finger protein ZIC 3-like

GO:

id name namespace
GO:0009948 anterior/posterior axis specification biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591482.2 False 3087 mRNA 0.39 3 34338912 34342460
TU2489664 True 2277 TUCP 0.37 2 34338911 34341813

Neighbor

gene id symbol gene type direction distance location
il2rc2 il2rc2 coding downstream 70427 34257816 ~ 34268485 (-)
LOC110510131 dpp3 coding downstream 88247 34235676 ~ 34250665 (-)
LOC110510130 LOC106563702 coding downstream 112031 34218633 ~ 34226881 (-)
si:dkeyp-50d11.2 LOC106563699 coding downstream 166937 34164184 ~ 34171975 (-)
LOC118945276 NA coding downstream 245897 34092309 ~ 34093015 (-)
LOC110510139 LOC106563695 coding upstream 20049 34362509 ~ 34384584 (-)
trnas-gcu-266 NA coding upstream 203844 34546304 ~ 34546385 (-)
hif1al2 LOC106563688 coding upstream 204321 34546781 ~ 34565141 (-)
LOC110510152 LOC106563684 coding upstream 277498 34619958 ~ 34629302 (-)
leap-2b leap-2b coding upstream 341959 34684417 ~ 34685804 (-)
G2178146 NA non-coding downstream 13245 34325439 ~ 34325667 (-)
G2178128 NA non-coding downstream 34778 34303931 ~ 34304134 (-)
G2178124 NA non-coding downstream 37219 34301459 ~ 34301693 (-)
G2178121 NA non-coding downstream 40187 34298442 ~ 34298725 (-)
G2178120 NA non-coding downstream 40856 34297846 ~ 34298056 (-)
G2178155 NA non-coding upstream 1706 34344166 ~ 34344415 (-)
G2178157 NA non-coding upstream 6427 34348887 ~ 34349153 (-)
G2178162 NA non-coding upstream 13511 34355971 ~ 34356270 (-)
G2178219 LOC106563694 non-coding upstream 110200 34452660 ~ 34455530 (-)
G2178229 NA non-coding upstream 126930 34469390 ~ 34469626 (-)
G2177991 cfb other downstream 191593 34092047 ~ 34216247 (-)
G2177695 NA other downstream 826586 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1694340 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 1905271 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 2053429 32282188 ~ 32287263 (-)
G2178372 NA other upstream 460731 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1619524 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 2162013 36499597 ~ 36596534 (-)
G2180120 NA other upstream 2164080 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2634694 36975909 ~ 36979761 (-)

Expression


Co-expression Network