znrd2 (ssa27)


Basic Information

Item Value
gene id znrd2
gene name ssa27
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34469852 ~ 34472094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591491.2
TATTTTGGTTtagttataaaaatatatatttgactggACTGTCtctgagctagctagctatagtctTCCACTACGGCAGGTGGCAGTAGCAAACCTATAAAGGTTACATTTCCAACGTAGTGCACGcatgtgtacatacattttttataaagCAACGGCGTGCAGCAACGAGGGATAGCAGTGGAATCATGGCACTGAATGCAGACGACGATGACTTCGAGTGGACACCCCCTTCAGAATCGGAGATGAAGGTTATTCATGCTCAGCGGGAACGACAGGACAAAATAAGCAAGCTCATGGGTGCCTACCTCCTCAAAGGCTACAAAATGTTAGGAGAATGCTGTGAGCAATGTGGGACGATTCTCCTTCAGGACAAGCAGAAGAAGAACTACTGTGTTGCATGTCAGGAACTGGACTCTGACGTAGACAAGGACAACCCAGCCCTAAATGCCCAGGCTGCCCTGTcacaggtcagagagagacagctagcctCTCAGCCTGTCCATCTGGACAATGAAGCCCCCTCCAGTGACACCCCCCTCTCCATCACAGGGCAGCCCCGACCAGAGCACTGCGAGGGTGCTGCGTCAGGACTGAGAGGGCCCctacctccaccagccaaccccTCCCCTGCACTCACCGTGACCCCTAGCTTCCTCCCTACATCCACCCCATCCATACAGCCAGTCCAGGTGGCAGCCCCCATAGTAGCCCCTGCACCTCACCCAGCCCTGTCCAGTGCTGAGGATGCAGTGCTGCACAAGCTGCGGTGGGCTACACAGGAGCTCCAGCACTCAGCCTCAGTAGAGGCTAGTATCCAGCTGTGCAGCCTCATCCGCAGCTGCGCAGATTCACTGCGCAGCCTGAAAGAGCTTCACCAATCATGAGACTGAACTGATGGCAATTCTAAAAACAGAAACAAGGCATAAACACATGCTGACATAAGCAACACCGGAAGTTGTAGCATCTTGATTCCCTTGCAAAGGTTTTTGTGGCAAATATGGCGGTAAAGGTTCATGTAATTAACTTGGACAACTGTCTGTATGCATAGTTTGTATTTTGATTGCCTGACCTGTAGTGTAACATTTGTTTAAACATTGCTGTTACTTTTCATTTGAAGTCTTCTCTGGATTCATGGTGAAGTTGACACAAACTTGCGTGGTGAGAATGGGCACCTCTGAGTGGTTGAATTTCTTTAAACTGCATATAGTTGAGTGGGGTTTGACTGGTTGATATTAATGTACATCACTTGTTTATAAAAATCTGAATTTATCCACATTA

Function

NR:

description
Sjoegren syndrome/scleroderma autoantigen 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591491.2 True 1281 mRNA 0.48 4 34469852 34472094

Neighbor

gene id symbol gene type direction distance location
LOC110510140 NA coding upstream 7395 34456414 ~ 34462457 (+)
LOC110510141 LOC106563694 coding upstream 14221 34447839 ~ 34455631 (+)
LOC118945289 NA coding upstream 72686 34393990 ~ 34397166 (+)
LOC110510136 LOC106602966 coding upstream 134111 34329181 ~ 34335741 (+)
LOC110509380 NA coding upstream 166505 34299885 ~ 34303347 (+)
LOC110510143 LOC106563691 coding downstream 473 34472567 ~ 34477333 (+)
ehbp1l1b LOC100380650 coding downstream 6369 34478463 ~ 34516156 (+)
LOC110510145 rab1a coding downstream 44528 34516622 ~ 34521725 (+)
cd248b LOC106563689 coding downstream 69726 34541820 ~ 34544760 (+)
LOC100136033 LOC100136033 coding downstream 109658 34581752 ~ 34586596 (+)
G2177496 NA non-coding upstream 17202 34452173 ~ 34452650 (+)
G2177426 NA non-coding upstream 105432 34362522 ~ 34364420 (+)
G2177422 NA non-coding upstream 113389 34356240 ~ 34356463 (+)
G2177420 NA non-coding upstream 114687 34354938 ~ 34355165 (+)
G2177408 NA non-coding upstream 144219 34325423 ~ 34325633 (+)
G2177506 NA non-coding downstream 22520 34494614 ~ 34495869 (+)
G2177507 NA non-coding downstream 24211 34496305 ~ 34496775 (+)
G2177515 NA non-coding downstream 67176 34539270 ~ 34539757 (+)
G2177471 NA non-coding downstream 73978 34546072 ~ 34546586 (+)
G2177470 LOC106563688 non-coding downstream 80215 34552309 ~ 34565130 (+)
G2177424 NA other upstream 9083 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 237669 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 334453 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1234317 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2343774 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 330845 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1033754 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1379560 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1440396 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2206477 36678571 ~ 36680297 (+)

Expression


Co-expression Network