LOC110510143 (LOC106563691)


Basic Information

Item Value
gene id LOC110510143
gene name LOC106563691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34472567 ~ 34477333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591492.2
TGACGAAAGTAGGAATGTACTGATGGAGACAGATCCATAGTTCACTCCCCGATTTAATTGTGGGGACAATTGGAATATTCAGTGTTTCTGGATGGCAAGATTGGGTGGGAGTTTTCAGTGGTTTTGTCTTGAGGTTAGGCATTTGGAAATGGGTTAAGGTAAAGATTTTGGTATTGCTAGAATGAAACAAACCACCGACCTCGTTTCGGAATTATCGTTACAAAGTACGTACTGTTTCCTCTCTCCCCAAATATAGTGTGTTTTGGAAGCGGTGCAGCGCCTCGGTCTCGCTGCGATGAAGTGGGACGGGGAGGGGATATTATCCAGGGCGAGGTTGGCAGTTGACAGGAAAGCGTAGTGGGAAACAAAGCAAGGACATCAGACATGAATTCATCCTGGTAACATTTGCATAGGCTTCCGTTATGTTTTCATTGTCAAAGCAGTTTTTCATCCACACTACGATGGATGCTGTGTGCATGGCGCCTCTATTGTGCTAGTGAGGACTCGTTGGAAATACAATAATCGGACTGAAGGTGACGCAACGTATTTTTATTGGAACTATACATTCCCTCTACATTTGCGACATGTTCTGTTAAACGCTCATCGGTGGATTGCTGATTTGAGACGACTAGGCTATAGCCGACTTTTTCGAAATTATCACAAACTACTTGATAATAGACTTCCGTTATTGAATCCATATGTTCTTTATGATTTCATATTTCTGGCAGTTATATGATAGCATATAATAAGACGCGTGGaagtaaacaaatatatatatacattgatACAGAGGTAGAAAATGAACGGGTTCCAGACCAGTCCTCCTGAATGTCCAGACAGCGTCTGTTCAATCGAAGGACTACCCCCTTTGCCAAAAGGCCTCAGCGGCATCCTGAACTCCAGTGGTGGCTCATGGAGGGACGTCAAAAAAGTCTACAGTAAACTGACAAGCATTCAGGCCGACATTAGCAAGTCTACAGTGATCGACTCTCTCGGCCGCATCAAGCCTGCAAGTCTGGACGCAGGGCTCGCAGTGCTGCGCGAAGAAATGGTGGGCCTCAGACAGTTGGACATGTCtctgcactgtcagctgtggtcTCTCTATGAGTCCATCCAGGAGTACAAGGGAGCCTTTCAGGACATCTCCAACTCTCTGCTGTCAGAGAGCAGCATCACTACAGAAAATAGTTactctgaggaagaggatgattatgaagaggaggagaacgaTGGTGATAATGTACCTCAGAATCTACCTGGCACTTCACTGACTCTCCAGTCAACTCAAAACTCCCGGGACCAATGGATCAAAGAGTCTTTCCACATTTCCTTATAAACCAACTAATATTTTCCCTGTATTTACATAATATAACCTGTTTCCTGTTCTGTATAgctgttttattatttattatactTGTACCCAGCTAGCTAGGTTATTGGCAGAATAACATTTTTATACTGGTGCCCTACTGATGAACCGTCTCCATCACACAAGGTGCTGACATTTTCAACAAAACCTTGTTACTATACAATCCTTTGTTAAAGAGACCTTGCTTGTTGATTTGGACTAATTGTACGTATCTTGAAAACACAAGCCAATTAAGCCATATTTCAAATACCTgatgatttatatatatatacatatatatattacatatacatatacatgatTGTAAATGCCTTGTAATTTACTCCTTCATCGGAGTAAAACAGATTTTTCTCTAAATATAATTTTCTTCTCTACAATTTTAAGATTGAATGTAATCTTAGACACGTAGTCACATGCACACAATGTCagtatttcttttttttgtttgttgtgatGGGAAGTTTATGTATTGAGCTTTTTTAATATCTtggcataaaaataaaaaatgctatGGACAGTAACCATGTCTTTTAAGTCAAATCTACACTACTTCAATGGTCCGTTAATGGGTCCAGCTCAACTGTAATATATTGGTTTGGAAAGGGGTTATTgacatactctaaccactagatggcAACATTTGTTGTGACAGATATCAGCATCTGTTCCACATGTAGAAAACCTGAAAAATCTTGTTTCCCAAGATGAAGTCAGAAAGCCCTTTAGTTCCAAAAACTGTACTTTTGTTCTTGTGTTTCTGGCTCACTGCAGAGTATGCATTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACGATGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGTGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGATAACTGTGGAAGTGAGCCTTTTTGCATCTAACTATTACTTACAGTATCTCACAGGAGAAGTTATGTGGATGCCATTGATATCATTGTTTAGCCCTTTAAAGTTATATGACTGTACTTTTGCATGTTTTTGGTTCATGAGAGCACCACTCTGACTGTCTGGCCATTATAAACAAACCGTTCCAGCCACACATGGACTTATTAGGTAATGATCCCTGTTCTCTCCCCAGGGTAGGAGGAGGAGTCCAGAACACAGTAGCTGTAAAACATTCAACTACCATCATAATGCCTTCCTTACTAACGGAATTAGCCCCGAACATCTAGTGTTTCTACCTATTTAGTGGTTGAAATAGAATTTGAATAAAACATAAAAGTCTTGTTTAAACTTGAAAACACCATAATGTTTTGTGTAAAGGAAGGTTAGAGGAATACAACCAGGACATCCCAGGTCATTTATCTTGCTAGCTTGCCATTATATTTAGTATTAAGGCAATGTGTATGACAACTCATCAACATCAAGCAATAATAGCAGAGGCTTATACCAGTAGGCCCGGCTTATTGTTGTCTTCACATAGTTTCATCCATTCCATGCCACACttccatatatattacatagacATTATGTCAGCATGACTAGAATGGAATAACTTCTGTAATTACAGTCTAATAAGTATATTAGTACACACAGAGTCAGTATGTTTTCTTTGAAGACAGAATCAAAAGTAATAGCAGCAAATACTAAGGTCAGAGCAGCAAGTGTACTCTtaggaaaaaaaggtgctatctagaacctaaaaataGTTATTAGGCTGTCCTCAAGGCAGAACccattgaagaacccttttggttcaatgtagaaccctttaaacagagggttctacatggaacctaaaatAGTTTTACCTgggaccaaaaagggttctcgtATGGGGAcagttgaagaacccttttttctaagtgtgtaCTGCTTAACACAGTAACTGGTGACAGGAATTACATGAATAGATCAACTCTACCCTTGTGCAAGCTACGTTACAGATCCACTAGCCACCAGGAAATGACTAATTGAAAACAGGAAGCCCCATACATGCCTCAGACATCCATGATCATTTCCCTAATAGCCACAGAGCAAGGCCACTTTACTGCAACCTTTGATTGTATTTTCGTAATAACGGTCTCTGAAATATTTTTACCATTGGTGGTCAGTTCCCATTTCAATCATTTTATTTACTATTCATATAGCAACAGAATATGAAAACTGGGGTGAGAGCATTTACAGTCCTACTACATCACTGTCAGACTGATAAATGACAGACATTACGTCCATCCACTCAGCTGACAGCAGGATCTGTATCATCACAATGATGATGACGCCCTAACATAAACCAGATACTTCGAAGAGGGCAAATATTTTCCAGAGTGGTATAACTTATAACTTAATTTTTATCACTATGATTGGATTTGTTGGTATTTATTTGTACTGTTCAATAGGCTATCTGTGTTGATGTCATCAGACATGTCATCAATTAGGCTAGCCTTTGCCTTCTTTGATCTTAAGAGGAGAAGGGCCTCAATCAATAGCCTAATGATGATGGATCAAATTAAAACAATCCATTGTTCACTCTTAGCGGAATCCTAAAGTTACTAGGCACTTATTTTCTATAAACCATGATAAGGGAGATATTCAATGTGATCGTTCAagtaatacagaacattaaaacAGGTGAGAGCTATTACATTCCTTGTAGAAAGTCCCATGTATTTCTATAAATAGGCCACACACAGCTGCGGGacgtaggggtgctgagggtgttGTAGCACCCCC

Function

NR:

description
protein FAM89B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591492.2 True 4426 mRNA 0.39 2 34472567 34477333

Neighbor

gene id symbol gene type direction distance location
znrd2 ssa27 coding upstream 473 34469852 ~ 34472094 (+)
LOC110510140 NA coding upstream 10110 34456414 ~ 34462457 (+)
LOC110510141 LOC106563694 coding upstream 16936 34447839 ~ 34455631 (+)
LOC118945289 NA coding upstream 75401 34393990 ~ 34397166 (+)
LOC110510136 LOC106602966 coding upstream 136826 34329181 ~ 34335741 (+)
ehbp1l1b LOC100380650 coding downstream 1130 34478463 ~ 34516156 (+)
LOC110510145 rab1a coding downstream 39289 34516622 ~ 34521725 (+)
cd248b LOC106563689 coding downstream 64487 34541820 ~ 34544760 (+)
LOC100136033 LOC100136033 coding downstream 104419 34581752 ~ 34586596 (+)
LOC110510150 LOC106563687 coding downstream 114488 34591821 ~ 34596053 (+)
G2177496 NA non-coding upstream 19917 34452173 ~ 34452650 (+)
G2177426 NA non-coding upstream 108147 34362522 ~ 34364420 (+)
G2177422 NA non-coding upstream 116104 34356240 ~ 34356463 (+)
G2177420 NA non-coding upstream 117402 34354938 ~ 34355165 (+)
G2177408 NA non-coding upstream 146934 34325423 ~ 34325633 (+)
G2177506 NA non-coding downstream 17281 34494614 ~ 34495869 (+)
G2177507 NA non-coding downstream 18972 34496305 ~ 34496775 (+)
G2177515 NA non-coding downstream 61937 34539270 ~ 34539757 (+)
G2177471 NA non-coding downstream 68739 34546072 ~ 34546586 (+)
G2177470 LOC106563688 non-coding downstream 74976 34552309 ~ 34565130 (+)
G2177424 NA other upstream 11798 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 240384 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 337168 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1237032 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2346489 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 325606 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1028515 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1374321 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1435157 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2201238 36678571 ~ 36680297 (+)

Expression


Co-expression Network