cd248b (LOC106563689)


Basic Information

Item Value
gene id cd248b
gene name LOC106563689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34541820 ~ 34544760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591497.2
cctccctcccgtcTCTTTTCTTTCTCCTGCAGATCAGTTAGAATGCTGCTACCAAGGCAGAGGTAGACCAGCAAGGAGCTCAGGAGAAAGGCCTCTGACTAAATGTAAGAGAATAGTTTTGTTTGGGGAAAAGTTGTGGAGTATTAACAAAAAAGcagaaagaaaaaaagtattacttagagagaggtgtagttaGGTGAGAAAAGACAATGGTACAGATGGGGAAGATGAGCTGTGCCTTGCGCTCCTGTGCTCTTCTGACAGTCTTGTGTGCCTGCTGGCCTCCCTGGACTCTGGGACAAGAGCTGCAGGAACAAGATGCCCTCTGCACTGCAGATGGCTGCTACGCCGTCTATTTCCAACGTAAGACTTTTCGGGAATCTGCAAGGTTCTGCAAGGACAAACGTGGTTCCCTGGCAACCCTAAAGAGTTCTGAGGAAGCGGCTATGGTCCATGAGCTCCTTTCGTCGGTGGAGCAGCGCGGCCCTCGGGCCAGGGTCAGACTGTGGATTGGGCTCCATCGCCAGCCCAGGCAGTGCTCTGCCACACGCCCACTCAGGGGATTCCAATGGATCACAGGTGAACAGGACACCCAGTACAGAAACTGGCTGAGAGCGGACTCACCTAGTACCTGTGCCGCACCCCGCTGTGTCGTCATAAGCGTCAACACTGCTGCTGACACCCGGGAGCAGCACGACAACTTCAAATGGCTGGATGGCTCCTGCTCACTGGCTGTGGATGGATTCATGTGTCACTACACCTACCGGGGGATGTGCCCTTCTCtgaagagtgagggagggggaccTGCACTGTATACCACCCCTTTCAGCCTGCTCAGCACCATCCTCACTCACATCCCCTTTGGTTCAGTAGCCACCTTGCCCTGCCCAGATAATGAAGACAGCTTAGGAGACCAGTCTGTTCTTTGCATGCTGAGGGAGGATGGGAGTGTGGGCTGGTCAAAGGATGCCCCCCTCTGCTCTGATGGCCCCCAGGACTGGTGTGAAGAGGAAAATGGTGGCTGTGAGCATTTCTGTCAGAATGCTGACACACACTATTACTGTGAGTGTTCTGAAGGCTTCACACTGGCAGAGGACGGCCAGACCTGCCAGCCGAACCATTCCTGTGGCACGGCCAACTGTGAGTTTGACTGTGAAGAGAATACTAAAGGATTCCGCTGCAAATGTCCAAATGGTTACCTGTTGGCACCTGGTGGACGCAACTGCCTGGATGTTGATGAGTGTCTGCAGGCGCCCTGCCCTCAAATCTGTGTAAATGCTCCTGGGACATTTGAGTGTCGCTGCAATGAGGGCTACGAGCCTGATGAAGACGGAGAATGTGTGGATGTCGATGAATGCAAAGATTCCAGCAACTGTGCACACAGATGTGAGAACACCCCTGGTTCCTATGCCTGCCACTGCCGCCCAGGCTTCACTGAGCTGCCCGATGATCCAGGCTTATGCCAGGACATCGATGATTGTCAGATCTCCACAAGCTGCCACCAGAAGTGTCTCAACTATGTGGGTGGGTTTGAGTGCTATTGTGAGGCAGGGTACGAGCTGCAGTCAGACCAGTATTCCTGTAAGGCCATTCCAGAGGGTGAACATGAGTATTCATCCACAGCTACCTCATCCTACCAAACCTCTTTCTCCTGGGTCCCCGAATTCCCAGACTGGGTTACTGACACCACAGCTTTGGAGTGGCTGACAGAGCAGACCAGCCTTGAGAGGCTTCCTACTGAGAAGACAGCCTCTATGCCGGTTCCACACAGGCCGTCGAATGACCATAACTCACACTGGGATGTTCTCACACGGAGAAAGCCTGCTCAGAACACTGTCACACCCTTGCCCGGCTCATCCTCCCAGGAAGATGATGTCACTCAAAGCCAAGAAGGTGATCCCTCAGTGGTGCCCAGCGTTAGTGACAGCCACCACCCAGCAGTCCAGAATGACAGGGGGGCTGGGAGAGTGGTAGAAACCCCAGACAGTAACTCTGAGATTAAGGCCGccaccacccccaccatcacACTCAGAGTCCCACTTCCAGACCAAACAACAGCATTCGCATTAGGGGCAGAGCGGCCTGACAGTAAGGGCAAAAGGAAGCAGGACAAGAGCTGGCTTCTCGTAGCACTCCTGGTGCCCCTGTGTGTTTTCATTGTGGTGATGCTGGCTCTGGGCATTGTGTACTGCACTAGCTGTGCTGTAGAACaaaacaagagaatcactgactgTTACCGCTGGATCGTCACCTCCAAATCAGAGGACAAGAACAAGGCGAAATCTCCTGCTTGACCAATAGAGGGCATACTGACTTTTTAATGAACAGTTCTgaatagaggggggggggtgaataaaGGGTTAAATAAAGAACAGGATCCAGACCACCCATCTGATGGCCTCTGCTGCTATCACAGTGAAACTGAACCCCTGCATACTCCTGCAGAACATTATAGTGTCTCTGTCTGAAGTTAATCTACAAATAGTGCTTATTAATTATGACAACATAAATTAAGTGCTGTTTTTTTAGGTGTTGTAAAGATCTGATAAACGCTTCTGAAGACAGGGGAGATGACTTTATCGAGAGGAAGGGGTTCATATTTCACTGCTAGTGCTTATTTCGCCACCATCAGAAAAATGTCTTAAACAATTATTCATTTAGCAGGTGCTAAAGTGTATTGTAGACCTCGTTATTGAGGTTACTGATAATCAACAGAATAAACTTCAGAGTATTAATTTAAGAAACCTAGATGAGAAACAAGCCCATAACATGTATTGAGAAGAAACACTGTGCAAGCAAAATGCTCCAATTGCAGAATATTTGGATGTGTTGCCATTTGTAATGTGTACCCACATTTGTTAGTTAGGCCTAAATTGAATTATGTCCTTCTAGATTCGTTGCACTGAGTATGCATTGGATTTGAATAAAAATCAATAAACCA

Function

NR:

description
endosialin-like

GO: NA

KEGG:

id description
K06706 CD248, CD164L1; CD248 antigen, endosialin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591497.2 True 2941 mRNA 0.50 1 34541820 34544760

Neighbor

gene id symbol gene type direction distance location
LOC110510145 rab1a coding upstream 20095 34516622 ~ 34521725 (+)
ehbp1l1b LOC100380650 coding upstream 25664 34478463 ~ 34516156 (+)
LOC110510143 LOC106563691 coding upstream 64487 34472567 ~ 34477333 (+)
znrd2 ssa27 coding upstream 69726 34469852 ~ 34472094 (+)
LOC110510140 NA coding upstream 79363 34456414 ~ 34462457 (+)
LOC100136033 LOC100136033 coding downstream 36992 34581752 ~ 34586596 (+)
LOC110510150 LOC106563687 coding downstream 47061 34591821 ~ 34596053 (+)
slc7a3a LOC106563685 coding downstream 54066 34598826 ~ 34611290 (+)
LOC118945290 NA coding downstream 90484 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 93473 34638233 ~ 34661249 (+)
G2177515 NA non-coding upstream 2063 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 45045 34496305 ~ 34496775 (+)
G2177506 NA non-coding upstream 45951 34494614 ~ 34495869 (+)
G2177496 NA non-coding upstream 89170 34452173 ~ 34452650 (+)
G2177426 NA non-coding upstream 177400 34362522 ~ 34364420 (+)
G2177471 NA non-coding downstream 1312 34546072 ~ 34546586 (+)
G2177470 LOC106563688 non-coding downstream 7549 34552309 ~ 34565130 (+)
G2177476 NA non-coding downstream 35884 34580644 ~ 34581052 (+)
G2177518 NA non-coding downstream 68069 34612829 ~ 34614298 (+)
G2177537 NA non-coding downstream 110683 34655443 ~ 34657869 (+)
G2177424 NA other upstream 81051 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 309637 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 406421 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1306285 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2415742 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 258179 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 961088 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1306894 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1367730 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2133811 36678571 ~ 36680297 (+)

Expression


Co-expression Network