hif1al2 (LOC106563688)


Basic Information

Item Value
gene id hif1al2
gene name LOC106563688
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34546781 ~ 34565141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967276.1
AGGAACCTGTTCTAGTTCAACCTCCAAAAGTACAAGTGGGACGAAATGCTCGCGACCGCATGACTGGCATGTGTCTGTGATTACTAGCAAGTGTCCATTCAGAGATTTTGGATAATGTTTCCTCATTTAGGAAATTCTCTGGAAGATGCTTGTGATCAAAAGCTCCACAAAAcaaagagacagaaggacagaattAATGGACagaagagaagcagATGGATCTGATTGGTAGGAGTCTGTTTGACTTCATGCACCACTGTGACCAGAGGGAAGTCAGAGATATCCTCTCAAAAATGATAGCTACTGAGAGACAACAGCAGTGTGACTTCCTCCTCCGTGTGAAGAGCACTCTGACCTCTCAGGGTCGAGCTGTCAATCAAAGACACACACGATGGAAGgtgatTCACTGCGTTGGGGTTAAGAAACAATCTCACCTTCCAGAGTCAGCCTGTCTTGTCCTAATGTGCCGACCCTTACCCATCTCACAATGCATCATCAGGGATGCCAGCTTGAATCACAAGACCTTCCTGAGCGGACATCACCCGGACATGAGGTTCACCTACTGCCATTCAGGTGTCAAGGAGCTGACTGGATATACAGAAACAGAACTTCTGGGCCAGTCTGTGTATCAGTATTACCACACATCTGACTGCCAGCACATTCACAAAGCACACCAGAGCTTGCTCTCTAAGGGACAGGCTACCATGGGCAGGTACCGTCTGCTGCTGAAAGGTGGTGGGTATGTGTGGGCAGAGACGGATGCATCGGTGGTGTACAACAACCAGACTGGGCAGCCCCAGAGTGTTGTCTGCATCAACTACATTCTAAGTGAGGTGGAGCTACCAGAGATGGTGTTCTCACTGCAGCAAACAGAACCTCTACTGAGGCCCTGTTACTCTGATCTTGTGGGGCCCATCCTGCAGAATGAGACCTATCCTGCAGCAGAGACAGCTGTTCATCTACGCAACACAAAAATACCAACTCCAGAACACAACAATGAGATCCAAACCTATGAGGGATATTCAGAGCTCAACCGAGAGGATCAAATGAACATGAACTCACTCTCTGAACTATGTGAGCTGGACCTGGACTCGTTGGCTCCATACATACCCATGGATGGAGAAGACTTCCTCCTCACTCCAGTTTTAGATGGGATCTTGGCCATGATAGAAGGTCCTGTTCTTCCACCTGGTTTGGAAGGCCATTGTTCCTTGGGGAAGTCCCCTATATCTGCTGGTTCTTTCACCACACATCAAATGAAAACCTTGCAGATAGAGCCCCCTTGTGACTCAGGGGCGTCACATACAGTCAAAGAGTCAGAGTTCGGGGACCATATGAAGTCAGTCTATAGAGGAGGCAGTGCTGTGTTCAAGGAGGGCCCTGACTATGCCGGATTGGAGGGCCTTGTCCCGAACGAACAGTGGAGTGAGAAACACAAGTCCTGTAGACATCCACAGGCACTTATGGCTGCTGCTGTTAGGCTGCCTTACCGGACCGTGGAATATTTCCCCATTCACCCACAAGATGGATCCACTTGCTTGTGTGGATCACCATCAAGGCAAGTGTTGTGGAAATACACACAGCAGCCCAAAATCCCAAGCACAGGCCCTCAGCCACCTACCAATCATATAGACGAGATGTCAACATGCCATGTTCCTTTCAGCCTGCCAGTACTGAGCAAGCTGGACTGTGAGGTCACACTGGGGCCAACCAGCTGCCTGCTTCAGGGGTCAGAGATCACCTCCGTCCTGGACCAGGCCCCCTCCAGATTCTTACACATGACAACATGGGGCATAAATCAGCTCTCCACCCAATATGCCCATCCTTGTTACGCACCCAGATCAGCTATTGAAGTCAGCTCTGGCACATCGACATCATATGCTGAATGGATAACATGAACTTGATTATCCCACGAATTGTGCCAATCTCTCCTCAACTAGGCCTATATTGTGACTTTTACTGGCAATTTAACTGACAAATGTGGATGCATAGCCTAGTTATTAAATACAGCATTTAATTACAATGATCAATATTAAAACTGTTGTCTTTGTTTTGTGCCCA
>XM_036967275.1
ATTGGTTCAGGAACCTGTTCTAGTTCAACCTCCAAAAGTACAAGTGGGACGAAATGCTCGCGACCGCATGACTGGCATGTGTCTGTGATTACTAGCAAGTGTCCATTCAGAGATTTTGGATAATGTTTCCTCATTTAGGAAATTCTCTGGAAGATGCTTGTGATCAAAAGCTCCACAAAAcaaagagacagaaggacagaattAATGGACagaagagaagcagGGTGAGTACGGAGCGGCTGCGGGCCCAGTCCCGTGTTGCAGCtaagagtaggagggagagagagagacgtttgtTTGGGGAGCTGGCAGCATGGCTACctctgccctctggtctgactGGCCACATAGACAAGGCTTCTATCGTCAGACTCACACTGGACTACCTGCGTCTGAGAGCGCTGCTAGACCATCGAGACAATGTCACACCAGAGACCAGGGTCTGCTCTGACACAGTCCACTTCACCATGCACGGGCGATACCCAATGGCAGGGATTTTCTCTGTGGAGACAGTGCTGGAGTCTGCTGTTGGGGGTTTCATGCTCTTGGTGTCTCAGAACGGCCAAGTTATCTTCACTACAGGGGACATAAGGACACACACTGGCATCAACCAGATGGATCTGATTGGTAGGAGTCTGTTTGACTTCATGCACCACTGTGACCAGAGGGAAGTCAGAGATATCCTCTCAAAAATGATAGCTACTGAGAGACAACAGCAGTGTGACTTCCTCCTCCGTGTGAAGAGCACTCTGACCTCTCAGGGTCGAGCTGTCAATCAAAGACACACACGATGGAAGgtgatTCACTGCGTTGGGGTTAAGAAACAATCTCACCTTCCAGAGTCAGCCTGTCTTGTCCTAATGTGCCGACCCTTACCCATCTCACAATGCATCATCAGGGATGCCAGCTTGAATCACAAGACCTTCCTGAGCGGACATCACCCGGACATGAGGTTCACCTACTGCCATTCAGGTGTCAAGGAGCTGACTGGATATACAGAAACAGAACTTCTGGGCCAGTCTGTGTATCAGTATTACCACACATCTGACTGCCAGCACATTCACAAAGCACACCAGAGCTTGCTCTCTAAGGGACAGGCTACCATGGGCAGGTACCGTCTGCTGCTGAAAGGTGGTGGGTATGTGTGGGCAGAGACGGATGCATCGGTGGTGTACAACAACCAGACTGGGCAGCCCCAGAGTGTTGTCTGCATCAACTACATTCTAAGTGAGGTGGAGCTACCAGAGATGGTGTTCTCACTGCAGCAAACAGAACCTCTACTGAGGCCCTGTTACTCTGATCTTGTGGGGCCCATCCTGCAGAATGAGACCTATCCTGCAGCAGAGACAGCTGTTCATCTACGCAACACAAAAATACCAACTCCAGAACACAACAATGAGATCCAAACCTATGAGGGATATTCAGAGCTCAACCGAGAGGATCAAATGAACATGAACTCACTCTCTGAACTATGTGAGCTGGACCTGGACTCGTTGGCTCCATACATACCCATGGATGGAGAAGACTTCCTCCTCACTCCAGTTTTAGATGGGATCTTGGCCATGATAGAAGGTCCTGTTCTTCCACCTGGTTTGGAAGGCCATTGTTCCTTGGGGAAGTCCCCTATATCTGCTGGTTCTTTCACCACACATCAAATGAAAACCTTGCAGATAGAGCCCCCTTGTGACTCAGGGGCGTCACATACAGTCAAAGAGTCAGAGTTCGGGGACCATATGAAGTCAGTCTATAGAGGAGGCAGTGCTGTGTTCAAGGAGGGCCCTGACTATGCCGGATTGGAGGGCCTTGTCCCGAACGAACAGTGGAGTGAGAAACACAAGTCCTGTAGACATCCACAGGCACTTATGGCTGCTGCTGTTAGGCTGCCTTACCGGACCGTGGAATATTTCCCCATTCACCCACAAGATGGATCCACTTGCTTGTGTGGATCACCATCAAGCCTGCCAGTACTGAGCAAGCTGGACTGTGAGGTCACACTGGGGCCAACCAGCTGCCTGCTTCAGGGGTCAGAGATCACCTCCGTCCTGGACCAGGCCCCCTCCAGATTCTTACACATGACAACATGGGGCATAAATCAGCTCTCCACCCAATATGCCCATCCTTGTTACGCACCCAGATCAGCTATTGAAGTCAGCTCTGGCACATCGACATCATATGCTGAATGGATAACATGAACTTGATTATCCCACGAATTGTGCCAATCTCTCCTCAACTAGGCCTATATTGTGACTTTTACTGGCAATTTAACTGACAAATGTGGATGCATAGCCTAGTTATTAAATACAGCATTTAATTACAATGATCAATATTAAAACTGTTGTCTTTGTTTTGTGCCCA
>XM_021591498.2
CATTGGTTCAGGAACCTGTTCTAGTTCAACCTCCAAAAGTACAAGTGGGACGAAATGCTCGCGACCGCATGACTGGCATGTGTCTGTGATTACTAGCAAGTGTCCATTCAGAGATTTTGGATAATGTTTCCTCATTTAGGAAATTCTCTGGAAGATGCTTGTGATCAAAAGCTCCACAAAAcaaagagacagaaggacagaattAATGGACagaagagaagcagGGTGAGTACGGAGCGGCTGCGGGCCCAGTCCCGTGTTGCAGCtaagagtaggagggagagagagagacgtttgtTTGGGGAGCTGGCAGCATGGCTACctctgccctctggtctgactGGCCACATAGACAAGGCTTCTATCGTCAGACTCACACTGGACTACCTGCGTCTGAGAGCGCTGCTAGACCATCGAGACAATGTCACACCAGAGACCAGGGTCTGCTCTGACACAGTCCACTTCACCATGCACGGGCGATACCCAATGGCAGGGATTTTCTCTGTGGAGACAGTGCTGGAGTCTGCTGTTGGGGGTTTCATGCTCTTGGTGTCTCAGAACGGCCAAGTTATCTTCACTACAGGGGACATAAGGACACACACTGGCATCAACCAGATGGATCTGATTGGTAGGAGTCTGTTTGACTTCATGCACCACTGTGACCAGAGGGAAGTCAGAGATATCCTCTCAAAAATGATAGCTACTGAGAGACAACAGCAGTGTGACTTCCTCCTCCGTGTGAAGAGCACTCTGACCTCTCAGGGTCGAGCTGTCAATCAAAGACACACACGATGGAAGgtgatTCACTGCGTTGGGGTTAAGAAACAATCTCACCTTCCAGAGTCAGCCTGTCTTGTCCTAATGTGCCGACCCTTACCCATCTCACAATGCATCATCAGGGATGCCAGCTTGAATCACAAGACCTTCCTGAGCGGACATCACCCGGACATGAGGTTCACCTACTGCCATTCAGGTGTCAAGGAGCTGACTGGATATACAGAAACAGAACTTCTGGGCCAGTCTGTGTATCAGTATTACCACACATCTGACTGCCAGCACATTCACAAAGCACACCAGAGCTTGCTCTCTAAGGGACAGGCTACCATGGGCAGGTACCGTCTGCTGCTGAAAGGTGGTGGGTATGTGTGGGCAGAGACGGATGCATCGGTGGTGTACAACAACCAGACTGGGCAGCCCCAGAGTGTTGTCTGCATCAACTACATTCTAAGTGAGGTGGAGCTACCAGAGATGGTGTTCTCACTGCAGCAAACAGAACCTCTACTGAGGCCCTGTTACTCTGATCTTGTGGGGCCCATCCTGCAGAATGAGACCTATCCTGCAGCAGAGACAGCTGTTCATCTACGCAACACAAAAATACCAACTCCAGAACACAACAATGAGATCCAAACCTATGAGGGATATTCAGAGCTCAACCGAGAGGATCAAATGAACATGAACTCACTCTCTGAACTATGTGAGCTGGACCTGGACTCGTTGGCTCCATACATACCCATGGATGGAGAAGACTTCCTCCTCACTCCAGTTTTAGATGGGATCTTGGCCATGATAGAAGGTCCTGTTCTTCCACCTGGTTTGGAAGGCCATTGTTCCTTGGGGAAGTCCCCTATATCTGCTGGTTCTTTCACCACACATCAAATGAAAACCTTGCAGATAGAGCCCCCTTGTGACTCAGGGGCGTCACATACAGTCAAAGAGTCAGAGTTCGGGGACCATATGAAGTCAGTCTATAGAGGAGGCAGTGCTGTGTTCAAGGAGGGCCCTGACTATGCCGGATTGGAGGGCCTTGTCCCGAACGAACAGTGGAGTGAGAAACACAAGTCCTGTAGACATCCACAGGCACTTATGGCTGCTGCTGTTAGGCTGCCTTACCGGACCGTGGAATATTTCCCCATTCACCCACAAGATGGATCCACTTGCTTGTGTGGATCACCATCAAGGCAAGTGTTGTGGAAATACACACAGCAGCCCAAAATCCCAAGCACAGGCCCTCAGCCACCTACCAATCATATAGACGAGATGTCAACATGCCATGTTCCTTTCAGCCTGCCAGTACTGAGCAAGCTGGACTGTGAGGTCACACTGGGGCCAACCAGCTGCCTGCTTCAGGGGTCAGAGATCACCTCCGTCCTGGACCAGGCCCCCTCCAGATTCTTACACATGACAACATGGGGCATAAATCAGCTCTCCACCCAATATGCCCATCCTTGTTACGCACCCAGATCAGCTATTGAAGTCAGCTCTGGCACATCGACATCATATGCTGAATGGATAACATGAACTTGATTATCCCACGAATTGTGCCAATCTCTCCTCAACTAGGCCTATATTGTGACTTTTACTGGCAATTTAACTGACAAATGTGGATGCATAGCCTAGTTATTAAATACAGCATTTAATTACAATGATCAATATTAAAACTGTTGTCTTTGTTTTGTGCCCA

Function

NR:

description
hypoxia-inducible factor 1-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967276.1 False 2061 mRNA 0.48 10 34546781 34565132
XM_036967275.1 False 2355 mRNA 0.49 13 34546781 34565140
XM_021591498.2 True 2461 mRNA 0.49 12 34546781 34565141

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-266 NA coding downstream 396 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 162197 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 204321 34338911 ~ 34342460 (-)
il2rc2 il2rc2 coding downstream 278296 34257816 ~ 34268485 (-)
LOC110510131 dpp3 coding downstream 296116 34235676 ~ 34250665 (-)
LOC110510152 LOC106563684 coding upstream 54817 34619958 ~ 34629302 (-)
leap-2b leap-2b coding upstream 119278 34684417 ~ 34685804 (-)
LOC110510156 LOC106563681 coding upstream 150798 34715939 ~ 34727232 (-)
LOC110510161 LOC106563678 coding upstream 244730 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 286055 34851196 ~ 34862503 (-)
G2178263 NA non-coding downstream 7048 34539290 ~ 34539733 (-)
G2178254 NA non-coding downstream 18904 34527648 ~ 34527877 (-)
G2178229 NA non-coding downstream 77155 34469390 ~ 34469626 (-)
G2178219 LOC106563694 non-coding downstream 91251 34452660 ~ 34455530 (-)
G2178162 NA non-coding downstream 190511 34355971 ~ 34356270 (-)
G2178090 NA non-coding upstream 7298 34572439 ~ 34573267 (-)
G2178088 NA non-coding upstream 15705 34580846 ~ 34581441 (-)
G2178274 NA non-coding upstream 22471 34587612 ~ 34587935 (-)
G2178276 NA non-coding upstream 24029 34589170 ~ 34589628 (-)
G2178283 NA non-coding upstream 47699 34612840 ~ 34614255 (-)
G2177991 cfb other downstream 399462 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1034455 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1902209 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2113140 32395346 ~ 32433641 (-)
G2178372 NA other upstream 238050 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1396843 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1939332 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1941399 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2412013 36975909 ~ 36979761 (-)

Expression


Co-expression Network