LOC100136033 (LOC100136033)


Basic Information

Item Value
gene id LOC100136033
gene name LOC100136033
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34581752 ~ 34586596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124356.1
GAGCAGCCATACACAAATACGTTAGAGTATAGCTGGTTACGTTAATTCCCACTGTCATCCATTTTGACATGAAGATGGTTGGAAGCTGGTtgtttctcctcatctctctccaagGATATGAGGCTCCCTCCACCCCCAATGTAAACTGCCTGATCATTAATCTGGATTATGTCAACTGCATCTGGAGTGAACAGAGCATCCCAGAGGTCAACTTCACATTTTTCAGCAGCAGGTTCATCAAAGATAATATGGAGGAGTGCACAACATATCTCCAGGAGGAGAGTTATGCTGTGGGATGTAGACTGTCCTATGACAAGTCTGACAGGTTTAGAACACTGAAAACCAAGCTGGTCCATCAGAACATGAGTTATGTGCAGGACCATAACCTGAAAAGCATGGTGAAGCTTTACCCTCCTGTCAACCTGTCAGTTGAGATGAACAAAGACCCAGAGCTGAATCTGTACTGGAACAACAGCAAGAACACCTTCTGCATTGAGAGTGAAGTTCGCTACAGAATAAACAGCGACAAGTGGAAGACATCTACTCCAAGCAAGGAACAGAAGTATGCTGTGGCTTTCCCGTTAAAGAGCAGTCGGTATGAGTTTCAAGTGAGAGCACGAGTAAACGACATGTGTGGCGAGTCCGAGTTCTGGAGTGAATGGAGTCAGCCTATTCAATGGGATTCCATGAAGGGAAATAACATCACAGACATATCTGGCAGCTCAATGTCTGTGTGGAAGCCAGTATTGTCATTAGTGGGTACCATGACACTCTTCATATTGGCCTGCATGCTGGTCTACAGGGAAAGAGAACGACTGAGATTCATCCTCATTCCCATTGTGCCTAATCCAGGAAAGAACCTAGATGAGAATGTAGAGGCCTGGCGTCAAATCTCCAAGGACATTTGCTTCCAGTCTAACTTCACTGAGCTTGCCTGTCCTGTTCGTGAGTACAGTCTGGTTCCACAAACTGGCAGCGTCAGTGaatctgagagcaacttctccatCCTAACAGACCAGTCAGATTGCCTGTCCACATGCTCCTCCTCAGCTTCCACTTTTCCTGTCACAAGTGAAAATGAACAAGCTGGTAATGAATGAGACTTACAATGGCTGCATTCTAATTACCCTTCTCCCCTAGGTGTGCACTTGCTTGCTCTCCCTCATTGATAATACGTATTAGATGGGTGTATGCATGGGCTAAAGGGAATTTCTatcatattttttgttgttgaattttaacATGAACATCCTTAATTTTTCGGCACCCAATTCGTAATAAACGCAAGCATTTTTGTTTGATGTTCAACCATTTGTAAGATTTTTAAAAGCATCGATTTTTGAGAGAGAATAAAACGTAAAATGCACTGAACATTGCAATAATGACATACCCTCCTATTGCGAGAAAAAACGCTGTTAATTACACAAACTGACCACATACAATATAGCGTAGCATTATGAGCTAGGCTACTTATGAGCGTGCATGTCTAAAATGGTTCTAataatgtcatttaaaaaaaaaaagacatctaTAAATATACAAGCTAATGAAAAAATTATCTTAGCACAGGGTTAAACATAGTTGTAATCGATTGAGTGTTCAGCTGACAGTTTTAATATTATAAACAATCCCTTGTGAAATTGTACTATTGCACACTGTATCTCGTTGGAATCGAGGGAGCATCTGAAATGTGGAATATTAGCCTATACCTTcattaaaattgtattttaaagGAGCTTGTATTTAAATGTATTAGGGATACCcactgctcttcctggggtccaaacacattaaggcacttacattacatataaaacaaattataaaatagtacaaaagataaaacagtacatcatacaacattattacaccactgcatatctacaatacaaaatgtataatttcaccatacaacaatattacaatgtacatgTGTGGAGAGTGAGTGTGCTAGCGCTTGTATGCCTACGCctgtgtctgtacctttgtgtatatttcttcacagtccccgctgttccataaggtatattttaatctgtttttttaaaatctgattgtAATAGTATTTTCTTTAAAATGTTGTTTCCAAGCGGGGGTTACTGCTATAAAAATTACTATAGGCTATTGGCCTATTTCCTCTTAAATAAATATGATAAACGTTGCTTCCTAATGTTGCATGATATCCTGTAATCCTACcagtggcgacctgtcattcagggcaggtgccCCAcattgcaaacaatgtaaaaaaaataacatagTCATTGAGATAATAAAGCTGCagacaaa

Function

NR:

description
cytokine receptor common gamma chain precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124356.1 True 2289 mRNA 0.40 8 34581752 34586596
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Neighbor

gene id symbol gene type direction distance location
cd248b LOC106563689 coding upstream 36992 34541820 ~ 34544760 (+)
LOC110510145 rab1a coding upstream 60027 34516622 ~ 34521725 (+)
ehbp1l1b LOC100380650 coding upstream 65596 34478463 ~ 34516156 (+)
LOC110510143 LOC106563691 coding upstream 104419 34472567 ~ 34477333 (+)
znrd2 ssa27 coding upstream 109658 34469852 ~ 34472094 (+)
LOC110510150 LOC106563687 coding downstream 5225 34591821 ~ 34596053 (+)
slc7a3a LOC106563685 coding downstream 12230 34598826 ~ 34611290 (+)
LOC118945290 NA coding downstream 48648 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 51637 34638233 ~ 34661249 (+)
LOC110510155 LOC106563682 coding downstream 116729 34703325 ~ 34715546 (+)
G2177476 NA non-coding upstream 700 34580644 ~ 34581052 (+)
G2177470 LOC106563688 non-coding upstream 16622 34552309 ~ 34565130 (+)
G2177471 NA non-coding upstream 35166 34546072 ~ 34546586 (+)
G2177515 NA non-coding upstream 41995 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 84977 34496305 ~ 34496775 (+)
G2177518 NA non-coding downstream 26233 34612829 ~ 34614298 (+)
G2177537 NA non-coding downstream 68847 34655443 ~ 34657869 (+)
G2177532 NA non-coding downstream 75677 34662273 ~ 34662564 (+)
G2177548 NA non-coding downstream 89205 34675801 ~ 34676298 (+)
G2177606 NA non-coding downstream 176201 34762797 ~ 34763001 (+)
G2177424 NA other upstream 120983 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 349569 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 446353 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1346217 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2455674 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 216343 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 919252 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1265058 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1325894 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2091975 36678571 ~ 36680297 (+)

Expression

LOC100136033(LOC100136033) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC100136033(LOC100136033) Expression in each Bioproject

Bar chart with 21 bars.
LOC100136033(LOC100136033) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network