LOC110510150 (LOC106563687)


Basic Information

Item Value
gene id LOC110510150
gene name LOC106563687
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34591821 ~ 34596053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591501.2
CACCGCTTTTACCCATTTTACGTCATTGGCCATAGCCCCGGTGCACATAATCGAACTCCCTCAGTGTGGCTGGGTGTGTGTAGCGAGAGAGGGCACAGGGTGGCCCTCTAAATCAGGGTAGATTCATTTACACTACATTTACATACCACATAAAATTAATGAAAGGGGAGATCTAATAATTATTTCTCAGTATTGAGTGTTCTGACGTGAACTCACCGGGTTGTCGGATAAGGAAAATGTCAGATCCCACAGTGGCTGATACTCGCCGGTTAAATTCAAAGCCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATTGACGTTTATGACCCACAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACTTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTAAAGGATTCCATTGTGCGAAGAAGATACAGTGACTTTGAGTGGTTGAAGAATGAGTTGGAGCGAGACAGCAAGATTGTAGTGCCGCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGAGGCTTTCATCGAAGAGCGACGTGTGGGTCTTGAGCAGTTCATCAACAGaATTGCAGGTCATCCTCTCGCTCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCCTTGACCGTAACTACATTCCCGGAAAGATCCAGTGATCCAGAGGCGAGATGTGCATAGCACCGGCCAGAACCCGTCTGATTTATCACCTCGTCCCGATAAAGCATACAGAGCCCTGTCCCCGTCGCAGCCGCAACCACCTCTGAcagctgcctctgtctctctaatgccttgtactgtatatacatgtatattcTTCTAGATACCCCAGCAACACCGGTTCACGGCCCTCCGCAGCCCTATAATGTTTGTGTAGCCAAGCACACTAAATGGGGTGTGTTACAGGGAAGTTAGTACATTGTTGCAGATTTACACATAAACAGAAATTAGATTTTCTTTTTAAAAATCTGTATCTGACTGAATTTtccccctaaaaaaaaagcattgCATTTGACACTGTAGTTGAGTCCACCTCTATGTATCAATTCCAGCTATGCCTCATAATCTGCCCAACCTCCCAGCTACATTTGTTTCACTCGTCTTTGTCCCTCCCTCAATAAATTATTTTCTTGAATGATTTAATTCACAaatcacaatctctctctctaatgatcTTCATCCATAGAATACTGGCTGTGTCTACGTGTAAAGTATATATGATAGCTGTTTGAGAGGAAATTGTTATACTCTCTCTGCCCAGCATAGCCTAAAGGATTATATGTTCATGGTTCTGTAATTCCAGTTCATGGGTTACCCATTTTTTTTCACAcatcaataatttaaaaaaaaaactatttctgtCATTCCTTCTGGAGACGTTTCACTTTTGTAATAGTCTGATTTCTTACATTATGATTGAATACTTAAAGGTTTTCTCTGTCCCTTGGTACCCACAGTAACCAAAATTGTTTCTCCAATTGTATGATTAAAATCTCTGATGGATGTCAGTAAACAATGGTACCTTCCAAAGTTAAGCAAAATGTAGCATCATTGGAAATAAGTTTTTTAAAGGGAGGTCTTCCCATACTTTTTCTCTTAACATGACATTCCATGTTTCTTTGCATTTTCCATTCAAATAAGAATTTGTGGCTTTCCAACATGCTCTCATGCAGTTAGATTTTTCTATTATGATTACTTTTTCTTATCAGATTTTTTTTCTAACTATGTTTGCCTTGAATTATTCATTATCAGTCTTTGCATCGTCTTCAGTCTGTTTATGGGAATGTAATGTCAGGTAATCAAACCACTGTGAAAACAAGGGACTGATGAATAATCCACACATTTTTATTGATAAAGAAGCTTTTGGCATGAAGTTTATTGACCTAAAGTATTTCTTGAATGCCTTTTTTGTCGTATGTATTTTGTCTTCATTATTATCATTGTACATTTAATCTCCGTTTTCAGAAGAGCTGCCTTGTTTGTACCATAAATAAAAATCCCTCTACCTGTAGGGCTATGTCCA
>XM_021591502.2
CACCGCTTTTACCCATTTTACGTCATTGGCCATAGCCCCGGTGCACATAATCGAACTCCCTCAGTGTGGCTGGGTGTGTGTAGCGAGAGAGGGCACAGGGTGGCCCTCTAAATCAGGGTAGATTCATTTACACTACATTTACATACCACATAAAATTAATGAAAGGGGAGATCTAATAATTATTTCTCAGTATTGAGTGTTCTGACGTGAACTCACCGGGTTGTCGGATAAGGAAAATGTCAGATCCCACAGTGGCTGATACTCGCCGGTTAAATTCAAAGCCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATTGACGTTTATGACCCACAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACTTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTAAAGGATTCCATTGTGCGAAGAAGATACAGTGACTTTGAGTGGTTGAAGAATGAGTTGGAGCGAGACAGCAAGATTGTAGTGCCGCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGAGGCTTTCATCGAAGAGCGACGTGTGGGTCTTGAGCAGTTCATCAACAGaATTGCAGGTCATCCTCTCGCTCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCCTTGACCGTAACTACATTCCCGGAAAGGTATGAAATCCAGTGATCCAGAGGCGAGATGTGCATAGCACCGGCCAGAACCCGTCTGATTTATCACCTCGTCCCGATAAAGCATACAGAGCCCTGTCCCCGTCGCAGCCGCAACCACCTCTGAcagctgcctctgtctctctaatgccttgtactgtatatacatgtatattcTTCTAGATACCCCAGCAACACCGGTTCACGGCCCTCCGCAGCCCTATAATGTTTGTGTAGCCAAGCACACTAAATGGGGTGTGTTACAGGGAAGTTAGTACATTGTTGCAGATTTACACATAAACAGAAATTAGATTTTCTTTTTAAAAATCTGTATCTGACTGAATTTtccccctaaaaaaaaagcattgCATTTGACACTGTAGTTGAGTCCACCTCTATGTATCAATTCCAGCTATGCCTCATAATCTGCCCAACCTCCCAGCTACATTTGTTTCACTCGTCTTTGTCCCTCCCTCAATAAATTATTTTCTTGAATGATTTAATTCACAaatcacaatctctctctctaatgatcTTCATCCATAGAATACTGGCTGTGTCTACGTGTAAAGTATATATGATAGCTGTTTGAGAGGAAATTGTTATACTCTCTCTGCCCAGCATAGCCTAAAGGATTATATGTTCATGGTTCTGTAATTCCAGTTCATGGGTTACCCATTTTTTTTCACAcatcaataatttaaaaaaaaaactatttctgtCATTCCTTCTGGAGACGTTTCACTTTTGTAATAGTCTGATTTCTTACATTATGATTGAATACTTAAAGGTTTTCTCTGTCCCTTGGTACCCACAGTAACCAAAATTGTTTCTCCAATTGTATGATTAAAATCTCTGATGGATGTCAGTAAACAATGGTACCTTCCAAAGTTAAGCAAAATGTAGCATCATTGGAAATAAGTTTTTTAAAGGGAGGTCTTCCCATACTTTTTCTCTTAACATGACATTCCATGTTTCTTTGCATTTTCCATTCAAATAAGAATTTGTGGCTTTCCAACATGCTCTCATGCAGTTAGATTTTTCTATTATGATTACTTTTTCTTATCAGATTTTTTTTCTAACTATGTTTGCCTTGAATTATTCATTATCAGTCTTTGCATCGTCTTCAGTCTGTTTATGGGAATGTAATGTCAGGTAATCAAACCACTGTGAAAACAAGGGACTGATGAATAATCCACACATTTTTATTGATAAAGAAGCTTTTGGCATGAAGTTTATTGACCTAAAGTATTTCTTGAATGCCTTTTTTGTCGTATGTATTTTGTCTTCATTATTATCATTGTACATTTAATCTCCGTTTTCAGAAGAGCTGCCTTGTTTGTACCATAAATAAAAATCCCTCTACCTGTAGGGCTATGTCCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17918 SNX3_12; sorting nexin-3/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591501.2 False 2086 mRNA 0.40 5 34591821 34596053
XM_021591502.2 True 2093 mRNA 0.40 6 34591821 34596053

Neighbor

gene id symbol gene type direction distance location
LOC100136033 LOC100136033 coding upstream 5225 34581752 ~ 34586596 (+)
cd248b LOC106563689 coding upstream 47061 34541820 ~ 34544760 (+)
LOC110510145 rab1a coding upstream 70096 34516622 ~ 34521725 (+)
ehbp1l1b LOC100380650 coding upstream 75665 34478463 ~ 34516156 (+)
LOC110510143 LOC106563691 coding upstream 114488 34472567 ~ 34477333 (+)
slc7a3a LOC106563685 coding downstream 2773 34598826 ~ 34611290 (+)
LOC118945290 NA coding downstream 39191 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 42180 34638233 ~ 34661249 (+)
LOC110510155 LOC106563682 coding downstream 107272 34703325 ~ 34715546 (+)
LOC110510157 LOC106563680 coding downstream 152817 34748870 ~ 34761158 (+)
G2177476 NA non-coding upstream 10769 34580644 ~ 34581052 (+)
G2177470 LOC106563688 non-coding upstream 26691 34552309 ~ 34565130 (+)
G2177471 NA non-coding upstream 45235 34546072 ~ 34546586 (+)
G2177515 NA non-coding upstream 52064 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 95046 34496305 ~ 34496775 (+)
G2177518 NA non-coding downstream 16776 34612829 ~ 34614298 (+)
G2177537 NA non-coding downstream 59390 34655443 ~ 34657869 (+)
G2177532 NA non-coding downstream 66220 34662273 ~ 34662564 (+)
G2177548 NA non-coding downstream 79748 34675801 ~ 34676298 (+)
G2177606 NA non-coding downstream 166744 34762797 ~ 34763001 (+)
G2177424 NA other upstream 131052 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 359638 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 456422 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1356286 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2465743 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 206886 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 909795 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1255601 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1316437 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2082518 36678571 ~ 36680297 (+)

Expression


Co-expression Network