slc7a3a (LOC106563685)


Basic Information

Item Value
gene id slc7a3a
gene name LOC106563685
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34598826 ~ 34611290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591505.2
ATGATTTACACGTCACTGGCTCCGCCCTCTGAAAAATCCAAAAGTCCACAAGGAAATTTCACCGAGGAAATCGGGATGTTTCATCAGCCTATGGAAGTCAGCAGTATTTTGTCGTGCGGTGGCTAGGTCCTCCGAACACTTCAGAGTGAAGAGCAACGAGACTGGTGAGGGCAAGTGACCGGCAGAACAACCCGTCGAccaaccctcctctctatctcacacGCCGGGACTGAGCGAGACAATAAATCCCCCATACCACACTACTTCCACCTTTATTATCATCTCTGTGGGTCTTCTCATCTACATTGATCTCTCCTGCTGGATCTCAGCTCGTGACGCATTTTCACTGCTCTGATCAGCAACTGATCACAGCCTCGGCCCCAGCTCCCTCCACAGACAACCATGATAGAAAAAATGGCCTCCTTCGGCCGGATCCTGCTGCGACGCAGGGCACTGGATTGCTCCGATGAGGGAACACGCTTTGCCCGCTGCCTCTCCACACTGGACCTGGTGGCCCTGGGGGTGGGCTCCACCCTGGGGGCAGGGGTGTACGTCCTGGCTGGTGAAGTGGCCAGGGAGAAGGCTGGCCCTGCCATCGTCCTCTGCTTCCTCATCGCTGCACTCTCCTCTATGCTGGCCGGGCTCTGTTATGCAGAGTTTGGCGCCCGCGTACCCAAGACGGGTTCGGCGTACCTGTACAGTTATGTGACGGTTGGTGAAATCTGGGCCTTCATCACGGGATGGAACCTCATCCTCTCCTATGTCATCGGTACAGCCAGTGTGGCCCGAGCCTGGAGCTCTACATTTGATAATCTAGTGGAGGAGAAGATCTCTTTCTTCTTCAGGTCTTCCATGGCCATGAAGGTCCCGGGGGGCGTGCTGGCTGAATACCCTGACCTGTTTGCACTCATCATCGTGCTCTTACTAACTGGGCTGCTGGCATTTGGAGTGAGTGAGTCTGCCTTGATCAATAAGATTTTCACTGGGGTCAACCTGGTGGTGCTGGGCTTCATCATCATCTCAGGCTTTGTGAAGGGAGACCCAGACCACTGGAACCTCACCCTGGAGGACTTTGTTAGTACCTACCCCAACCACACCAACACCTCCAGCATATCCCAGGAGGTTGTGGATAAGATGTTTGGCTCGGGTGGTTTTGCTCCTTTTGGCCTCAGTGGCATTCTGTCCGGTGCTGCTACCTGTTTCTACGCATTCGTCGGTTTCGACTGCATCGCCACTACCAGCGAAGAGGCTAAGAACCCCATGCGTTCCATCCCCGTGGGCATCGTGGCCTCTCTGCTCATCTGTTTCTTCGCCTACTTCGGGGTGTCTGCAGCCCTCACCCTCATGATGCCTTACTACATGCTGGACACCCAGAGCCCCCTGCCAGAGGCCTTCAACTACGTGGGCTGGGATCCTGCTCGCTACATCGTGGCTGTGGGTTCCCTCTGTGCTCTCTCCACCAGCCTGCTTGGGTCCATGTTCCCCATGCCGAGGGTGATCTACGCCATGGCAGAGGATGGGCTCCTGTTCCGTGGCCTGTCCCGCATGAACACGCGCACCAAGACCCCCCTGATGGCCACTATAGTCTCTGGCTGTGTGGCATctctgaTGGCCTTTCTCTTTGACCTGGCTGCCCTGGTTGATCTCATGTCCATAGGGACACTGCTGGCCTACTCACTAGTGGCCATCTGTGTGCTTATCCTTAGgtaCCAGCCCGGCACCCTGAGCTCATCCAGTCAGACAGAAAAGCTAGTGGAGCTGGTTGGAGGGGAGAAGGTGGCCCGgggggacagtggagatgagtaCGGCCTGGATCTGGAGGACCGCCCCCTCAGGGAAAAATTCaccccctgcctcctcctcttccccagtgGTGCCTTACCTACCAAGACCTCCGGGAACATCGTCTATGCCACCACGGCCATTATCTCGTTGCTCATCACTGTGCTGTGTGTGGTGCTGGCAGGGAAGCTGGATGAGTTGATGGAGGTTCAGCCTGTGTGGGTCACAGTGTGTGTAGTCCTGGCCTTGCTCTGTGCCCTTTGTGTCATTATCATCTGGAGACAACCAGAGAGCACGGAAGCCCTCACCTTCAAGGTGCCCCTGCTGCCTTGGCTGCCTCTGTTCAGTGTCTTTGTCAACATCTACCTCATGATGCAGCTGGACCTGGCTACATGGTGCCGTTTCGCTGTGTGGATGGCCATTGGATTCGCAATCTACTTCTTTTATGGGATCTGGCACAGCAGTGCGGCAGCCAGCAGCACCCGTGGGAAATATGAGCCTGCCCTCCAGACCAAGAAGAAGCACATCTACCTGGGGGGAGACGAGAGTGAGGTGGAGGGGATGAGCCCCTGAACAGCTGGATGAAACCCCACACATAATACCTCTGCAGTGAAGGCAGACAATTCAACTGACTGACACTACAATTCATCTGTTTTCTTTTCCATTTTTGGGATATCTCTGTTTTAAGCTTTATTGGACATTTGAGGAATTATATTTTTAACAGTTGAAACATTACTATTAACATTACTAGTGATTTTATTTATTAGACGTTAGTCTCTTCCAAGTTTGATTGTGTCTGTGCCT
>XM_021591503.2
ATGATTTACACGTCACTGGCTCCGCCCTCTGAAAAATCCAAAAGTCCACAAGGAAATTTCACCGAGGAAATCGGGATGTTTCATCAGCCTATGGAAGTCAGCAGTATTTTGTCGTGCGGTGGCTAGGTCCTCCGAACACTTCAGAGTGAAGAGCAACGAGACTGGTGAGGGCAAGTGACCGGCAGAACAACCCGTCGAccaaccctcctctctatctcacacGCCGGGACTGAGCGAGACAATAAATCCCCCATACCACACTACTTCCACCTTTATTATCATCTCTGTGGGTCTTCTCATCTACATTGTGTGATCTCTCCTGCTGGATCTCAGCTCGTGACGCATTTTCACTGCTCTGATCAGCAACTGATCACAGCCTCGGCCCCAGCTCCCTCCACAGACAACCATGATAGAAAAAATGGCCTCCTTCGGCCGGATCCTGCTGCGACGCAGGGCACTGGATTGCTCCGATGAGGGAACACGCTTTGCCCGCTGCCTCTCCACACTGGACCTGGTGGCCCTGGGGGTGGGCTCCACCCTGGGGGCAGGGGTGTACGTCCTGGCTGGTGAAGTGGCCAGGGAGAAGGCTGGCCCTGCCATCGTCCTCTGCTTCCTCATCGCTGCACTCTCCTCTATGCTGGCCGGGCTCTGTTATGCAGAGTTTGGCGCCCGCGTACCCAAGACGGGTTCGGCGTACCTGTACAGTTATGTGACGGTTGGTGAAATCTGGGCCTTCATCACGGGATGGAACCTCATCCTCTCCTATGTCATCGGTACAGCCAGTGTGGCCCGAGCCTGGAGCTCTACATTTGATAATCTAGTGGAGGAGAAGATCTCTTTCTTCTTCAGGTCTTCCATGGCCATGAAGGTCCCGGGGGGCGTGCTGGCTGAATACCCTGACCTGTTTGCACTCATCATCGTGCTCTTACTAACTGGGCTGCTGGCATTTGGAGTGAGTGAGTCTGCCTTGATCAATAAGATTTTCACTGGGGTCAACCTGGTGGTGCTGGGCTTCATCATCATCTCAGGCTTTGTGAAGGGAGACCCAGACCACTGGAACCTCACCCTGGAGGACTTTGTTAGTACCTACCCCAACCACACCAACACCTCCAGCATATCCCAGGAGGTTGTGGATAAGATGTTTGGCTCGGGTGGTTTTGCTCCTTTTGGCCTCAGTGGCATTCTGTCCGGTGCTGCTACCTGTTTCTACGCATTCGTCGGTTTCGACTGCATCGCCACTACCAGCGAAGAGGCTAAGAACCCCATGCGTTCCATCCCCGTGGGCATCGTGGCCTCTCTGCTCATCTGTTTCTTCGCCTACTTCGGGGTGTCTGCAGCCCTCACCCTCATGATGCCTTACTACATGCTGGACACCCAGAGCCCCCTGCCAGAGGCCTTCAACTACGTGGGCTGGGATCCTGCTCGCTACATCGTGGCTGTGGGTTCCCTCTGTGCTCTCTCCACCAGCCTGCTTGGGTCCATGTTCCCCATGCCGAGGGTGATCTACGCCATGGCAGAGGATGGGCTCCTGTTCCGTGGCCTGTCCCGCATGAACACGCGCACCAAGACCCCCCTGATGGCCACTATAGTCTCTGGCTGTGTGGCATctctgaTGGCCTTTCTCTTTGACCTGGCTGCCCTGGTTGATCTCATGTCCATAGGGACACTGCTGGCCTACTCACTAGTGGCCATCTGTGTGCTTATCCTTAGgtaCCAGCCCGGCACCCTGAGCTCATCCAGTCAGACAGAAAAGCTAGTGGAGCTGGTTGGAGGGGAGAAGGTGGCCCGgggggacagtggagatgagtaCGGCCTGGATCTGGAGGACCGCCCCCTCAGGGAAAAATTCaccccctgcctcctcctcttccccagtgGTGCCTTACCTACCAAGACCTCCGGGAACATCGTCTATGCCACCACGGCCATTATCTCGTTGCTCATCACTGTGCTGTGTGTGGTGCTGGCAGGGAAGCTGGATGAGTTGATGGAGGTTCAGCCTGTGTGGGTCACAGTGTGTGTAGTCCTGGCCTTGCTCTGTGCCCTTTGTGTCATTATCATCTGGAGACAACCAGAGAGCACGGAAGCCCTCACCTTCAAGGTGCCCCTGCTGCCTTGGCTGCCTCTGTTCAGTGTCTTTGTCAACATCTACCTCATGATGCAGCTGGACCTGGCTACATGGTGCCGTTTCGCTGTGTGGATGGCCATTGGATTCGCAATCTACTTCTTTTATGGGATCTGGCACAGCAGTGCGGCAGCCAGCAGCACCCGTGGGAAATATGAGCCTGCCCTCCAGACCAAGAAGAAGCACATCTACCTGGGGGGAGACGAGAGTGAGGTGGAGGGGATGAGCCCCTGAACAGCTGGATGAAACCCCACACATAATACCTCTGCAGTGAAGGCAGACAATTCAACTGACTGACACTACAATTCATCTGTTTTCTTTTCCATTTTTGGGATATCTCTGTTTTAAGCTTTATTGGACATTTGAGGAATTATATTTTTAACAGTTGAAACATTACTATTAACATTACTAGTGATTTTATTTATTAGACGTTAGTCTCTTCCAAGTTTGATTGTGTCTGTGCCTCTAATTGTTAGCCCCTGGTGTCCAGCAGCAATATGAACTACAGCTGGCCAGGAGTGTTGGTTAGGGCCATGTGTAAACAGTGGGTCTATGGGGTTTACAATCTTGGTCAGAACCTCTGTGTACTTGGGTAAACAGCACAGGGTTAGTGGATCAAGGCCTGATGCAGGTGTTTTGGGGATTGCTGGCGTAGACAAACTGTCCATCACCTGTCACAGAGCAATGTATTTAACAGTGTACGCCTTGTGGCAGAAACTAGTATTTATTGTTGGTGTCAGCTTGTTCTGTAAGATGAAATATCACCACAGAGATGTGGGAACTAAATATCCTGAAGGCATTTATGAACAAtctgttgccagtgatgtctttgtcattgaaaatgtttttaaacataTGGTAAAATAGTCCAAGTAATGATGATATTGTCTTCACAGTGGTTAGTCCCTGTGTAACTGAAGCAGTATATGCATATTAGGTTCATCCACAGAATACGTGGAGATATTGTAG
>XM_021591504.2
GATTTACACGTCACTGGCTCCGCCCTCTGAAAAATCCAAAAGTCCACAAGGAAATTTCACCGAGGAAATCGGGATGTTTCATCAGCCTATGGAAGTCAGCAGTATTTTGTCGTGCGGTGGCTAGGTCCTCCGAACACTTCAGAGTGAAGAGCAACGGATCTCTCCTGCTGGATCTCAGCTCGTGACGCATTTTCACTGCTCTGATCAGCAACTGATCACAGCCTCGGCCCCAGCTCCCTCCACAGACAACCATGATAGAAAAAATGGCCTCCTTCGGCCGGATCCTGCTGCGACGCAGGGCACTGGATTGCTCCGATGAGGGAACACGCTTTGCCCGCTGCCTCTCCACACTGGACCTGGTGGCCCTGGGGGTGGGCTCCACCCTGGGGGCAGGGGTGTACGTCCTGGCTGGTGAAGTGGCCAGGGAGAAGGCTGGCCCTGCCATCGTCCTCTGCTTCCTCATCGCTGCACTCTCCTCTATGCTGGCCGGGCTCTGTTATGCAGAGTTTGGCGCCCGCGTACCCAAGACGGGTTCGGCGTACCTGTACAGTTATGTGACGGTTGGTGAAATCTGGGCCTTCATCACGGGATGGAACCTCATCCTCTCCTATGTCATCGGTACAGCCAGTGTGGCCCGAGCCTGGAGCTCTACATTTGATAATCTAGTGGAGGAGAAGATCTCTTTCTTCTTCAGGTCTTCCATGGCCATGAAGGTCCCGGGGGGCGTGCTGGCTGAATACCCTGACCTGTTTGCACTCATCATCGTGCTCTTACTAACTGGGCTGCTGGCATTTGGAGTGAGTGAGTCTGCCTTGATCAATAAGATTTTCACTGGGGTCAACCTGGTGGTGCTGGGCTTCATCATCATCTCAGGCTTTGTGAAGGGAGACCCAGACCACTGGAACCTCACCCTGGAGGACTTTGTTAGTACCTACCCCAACCACACCAACACCTCCAGCATATCCCAGGAGGTTGTGGATAAGATGTTTGGCTCGGGTGGTTTTGCTCCTTTTGGCCTCAGTGGCATTCTGTCCGGTGCTGCTACCTGTTTCTACGCATTCGTCGGTTTCGACTGCATCGCCACTACCAGCGAAGAGGCTAAGAACCCCATGCGTTCCATCCCCGTGGGCATCGTGGCCTCTCTGCTCATCTGTTTCTTCGCCTACTTCGGGGTGTCTGCAGCCCTCACCCTCATGATGCCTTACTACATGCTGGACACCCAGAGCCCCCTGCCAGAGGCCTTCAACTACGTGGGCTGGGATCCTGCTCGCTACATCGTGGCTGTGGGTTCCCTCTGTGCTCTCTCCACCAGCCTGCTTGGGTCCATGTTCCCCATGCCGAGGGTGATCTACGCCATGGCAGAGGATGGGCTCCTGTTCCGTGGCCTGTCCCGCATGAACACGCGCACCAAGACCCCCCTGATGGCCACTATAGTCTCTGGCTGTGTGGCATctctgaTGGCCTTTCTCTTTGACCTGGCTGCCCTGGTTGATCTCATGTCCATAGGGACACTGCTGGCCTACTCACTAGTGGCCATCTGTGTGCTTATCCTTAGgtaCCAGCCCGGCACCCTGAGCTCATCCAGTCAGACAGAAAAGCTAGTGGAGCTGGTTGGAGGGGAGAAGGTGGCCCGgggggacagtggagatgagtaCGGCCTGGATCTGGAGGACCGCCCCCTCAGGGAAAAATTCaccccctgcctcctcctcttccccagtgGTGCCTTACCTACCAAGACCTCCGGGAACATCGTCTATGCCACCACGGCCATTATCTCGTTGCTCATCACTGTGCTGTGTGTGGTGCTGGCAGGGAAGCTGGATGAGTTGATGGAGGTTCAGCCTGTGTGGGTCACAGTGTGTGTAGTCCTGGCCTTGCTCTGTGCCCTTTGTGTCATTATCATCTGGAGACAACCAGAGAGCACGGAAGCCCTCACCTTCAAGGTGCCCCTGCTGCCTTGGCTGCCTCTGTTCAGTGTCTTTGTCAACATCTACCTCATGATGCAGCTGGACCTGGCTACATGGTGCCGTTTCGCTGTGTGGATGGCCATTGGATTCGCAATCTACTTCTTTTATGGGATCTGGCACAGCAGTGCGGCAGCCAGCAGCACCCGTGGGAAATATGAGCCTGCCCTCCAGACCAAGAAGAAGCACATCTACCTGGGGGGAGACGAGAGTGAGGTGGAGGGGATGAGCCCCTGAACAGCTGGATGAAACCCCACACATAATACCTCTGCAGTGAAGGCAGACAATTCAACTGACTGACACTACAATTCATCTGTTTTCTTTTCCATTTTTGGGATATCTCTGTTTTAAGCTTTATTGGACATTTGAGGAATTATATTTTTAACAGTTGAAACATTACTATTAACATTACTAGTGATTTTATTTATTAGACGTTAGTCTCTTCCAAGTTTGATTGTGTCTGTGCCT

Function

NR:

description
cationic amino acid transporter 3-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13865 SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591505.2 False 2586 mRNA 0.54 13 34598826 34610786
XM_021591503.2 False 3094 mRNA 0.52 13 34598826 34611290
XM_021591504.2 True 2435 mRNA 0.54 12 34598828 34610786

Neighbor

gene id symbol gene type direction distance location
LOC110510150 LOC106563687 coding upstream 2773 34591821 ~ 34596053 (+)
LOC100136033 LOC100136033 coding upstream 12230 34581752 ~ 34586596 (+)
cd248b LOC106563689 coding upstream 54066 34541820 ~ 34544760 (+)
LOC110510145 rab1a coding upstream 77101 34516622 ~ 34521725 (+)
ehbp1l1b LOC100380650 coding upstream 82670 34478463 ~ 34516156 (+)
LOC118945290 NA coding downstream 23954 34635244 ~ 34638008 (+)
LOC110510153 LOC106563683 coding downstream 26943 34638233 ~ 34661249 (+)
LOC110510155 LOC106563682 coding downstream 92035 34703325 ~ 34715546 (+)
LOC110510157 LOC106563680 coding downstream 137580 34748870 ~ 34761158 (+)
LOC110510158 LOC106563717 coding downstream 152392 34763682 ~ 34782858 (+)
G2177476 NA non-coding upstream 17774 34580644 ~ 34581052 (+)
G2177470 LOC106563688 non-coding upstream 33696 34552309 ~ 34565130 (+)
G2177471 NA non-coding upstream 52240 34546072 ~ 34546586 (+)
G2177515 NA non-coding upstream 59069 34539270 ~ 34539757 (+)
G2177507 NA non-coding upstream 102051 34496305 ~ 34496775 (+)
G2177518 NA non-coding downstream 1539 34612829 ~ 34614298 (+)
G2177537 NA non-coding downstream 44153 34655443 ~ 34657869 (+)
G2177532 NA non-coding downstream 50983 34662273 ~ 34662564 (+)
G2177548 NA non-coding downstream 64511 34675801 ~ 34676298 (+)
G2177606 NA non-coding downstream 151507 34762797 ~ 34763001 (+)
G2177424 NA other upstream 138057 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 366643 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 463427 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1363291 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2472748 32115629 ~ 32150579 (+)
LOC110510159 LOC106563679 other downstream 191649 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 894558 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1240364 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1301200 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2067281 36678571 ~ 36680297 (+)

Expression


Co-expression Network