LOC110510152 (LOC106563684)


Basic Information

Item Value
gene id LOC110510152
gene name LOC106563684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34619958 ~ 34629302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591507.2
GCTATGTGATGCTGTTACTGCCATTTCATCAGCGGATTTTCACAAACATCTCCATCTTTAAACATGAAATTGCTATGAAATTAAACCATCGACAAGTTGTAAGGACGGCCGTTAGCCAATTTTACATCAAACTTGCCATCACAGTAACAGTTCCCTGTGTagaataaaataatacaaaaggATACTAGGACAAGGCCTATTTGCGTATCACTGCTTGGGGTAAAACAGTGTTTGACTAGGCCTCCTGAGATCACTGTTTCCGAGAGCATCTTCGATATACGAGATTTCTCAAGAACATGGGATTTGCTATTTACAGCCGTTGATCGCTCATCTAACAAGATTCTATGAGAGATGGAAGCGATATGGCTGTACCAGTTTCGACTCATCGTCATTGGGGACTCGACAGTAGGAAAGTCGTGCCTGATCCGGCGATTCACAGAGGGACGCTTTGCGCATGTGTCCGACCCCACAGTCGGTGTAGACTTCTTCTCACGCCTAGTGGAGATAGAACCAGGCAAACGCATTAAACTTCAAATCTGGGACACAGCCGGACAAGAGCGATTCAGgTCTATTACCAGGGCTTATTACCGTAACTCTGTTGGGGGGCTGCTGCTGTTCGACATCACCAACCGTCGCTCCTTCCAGAATGTGCATGAGTGGCTGGAGGAGGCCCGGAGTCACGTCCAGCCTCACAGCATCGTATTTCTGTTGGTGGGCCACAAGTGCGACCTGGAGCCCCAGAGGCAGGTGAGCCAGCAAGAGGCGGAGAAGCTGGCAGGTACCTATGGTATGCGCTACGTGGAGACATCAGCTCGCGACGCCATCAACGTGGAAAAGGCCTTCACTGAGCTAACGCGGGACATCTTTGAGCTCGTGAAGAGCGGTGACATCAACATCCAGGAGGGTTGGGAGGGGGTGAAGAGTGGCTTGGTGCCCAACGTGGTGCACTCCTCAGAAGAGGTCACCAAGAGTGGCCGGCGGTGCCTCTGCTGATTAGCCTGTCTGTCTAGTTGGCTTCACTCAACCCAGCCCATGCAGTCCTGTTACATTATGTCCCACTAGCTCGCAATCTTGTCacatatatatatctctctcactcccatTCTGAGTACTGGAAGGCCATTCCCGCTCTAGTCTACCACTGAATAAAACATGAATACAGCTACTTTCCACAGTAACCTTCCTGGCGTCTCTGTCTTACCTGTTACAGGCACTTGAAAGACAAGAAATGGCCTGTTTTATGATTTCATTGTCCTCCCTGTATTTATGCTTCATCTTGTGCCCCACAGAAGGAACACACCTCAAACTTTACAcgtctgttctgtgttctggaGTCTGGGGAACTCACACAACTATCGGGGGGGGGGAGGGTGTTCAATACAGGGGGAAACACCAAATCTATCACAGCTTATTCCACCTTGGCTATGGAAAGAACCAGAAAGCGTGTGTTGTATTACTGGCTGTGTGCAATGCTTCCTGCTTTTGGTGCGAGACTGATGACACCCCCAGACACATGAACAACCAAGAACACAATAGTGTATTGCCATCATCCTTTTCATCACAGATGGAACCAAAGCTTGCGTGGACTGAATCAGTTCTACATGAGTATCAACAGGGAATTTGCACAGTTGAGTGTTGGGTAGGCTGCACTGTGCGATGCCTAACATCAATGTTTTTCATTTGCCGTTTTCTTCATCGTTGCTCATATTAAATGCACAGTTGGGGACACAA

Function

NR:

description
PREDICTED: ras-related protein Rab-39B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591507.2 True 1731 mRNA 0.48 3 34619958 34629302

Neighbor

gene id symbol gene type direction distance location
hif1al2 LOC106563688 coding downstream 54817 34546781 ~ 34565141 (-)
trnas-gcu-266 NA coding downstream 73573 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 235374 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 277498 34338911 ~ 34342460 (-)
il2rc2 il2rc2 coding downstream 351473 34257816 ~ 34268485 (-)
leap-2b leap-2b coding upstream 55117 34684417 ~ 34685804 (-)
LOC110510156 LOC106563681 coding upstream 86637 34715939 ~ 34727232 (-)
LOC110510161 LOC106563678 coding upstream 180569 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 221894 34851196 ~ 34862503 (-)
LOC110510171 NA coding upstream 335827 34965129 ~ 34979665 (-)
G2178283 NA non-coding downstream 5703 34612840 ~ 34614255 (-)
G2178276 NA non-coding downstream 30330 34589170 ~ 34589628 (-)
G2178274 NA non-coding downstream 32023 34587612 ~ 34587935 (-)
G2178088 NA non-coding downstream 38517 34580846 ~ 34581441 (-)
G2178090 NA non-coding downstream 46691 34572439 ~ 34573267 (-)
G2178312 NA non-coding upstream 24776 34654078 ~ 34654620 (-)
G2178313 NA non-coding upstream 28873 34658175 ~ 34661244 (-)
G2178326 NA non-coding upstream 49282 34678584 ~ 34678907 (-)
G2178362 NA non-coding upstream 116855 34746157 ~ 34746483 (-)
G2177991 cfb other downstream 472639 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1107632 33511296 ~ 33512326 (-)
G2176363 NA other downstream 1975386 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2186317 32395346 ~ 32433641 (-)
G2178372 NA other upstream 173889 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1332682 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1875171 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1877238 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2347852 36975909 ~ 36979761 (-)

Expression


Co-expression Network