Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118945290 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 34635244 ~ 34638008 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: ras-related protein Rab-38-like |
| id | name | namespace |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC118945290 | True | 551 | mRNA | 0.47 | 3 | 34635244 | 34638008 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc7a3a | LOC106563685 | coding | upstream | 23954 | 34598826 ~ 34611290 (+) |
| LOC110510150 | LOC106563687 | coding | upstream | 39191 | 34591821 ~ 34596053 (+) |
| LOC100136033 | LOC100136033 | coding | upstream | 48648 | 34581752 ~ 34586596 (+) |
| cd248b | LOC106563689 | coding | upstream | 90484 | 34541820 ~ 34544760 (+) |
| LOC110510145 | rab1a | coding | upstream | 113519 | 34516622 ~ 34521725 (+) |
| LOC110510153 | LOC106563683 | coding | downstream | 225 | 34638233 ~ 34661249 (+) |
| LOC110510155 | LOC106563682 | coding | downstream | 65317 | 34703325 ~ 34715546 (+) |
| LOC110510157 | LOC106563680 | coding | downstream | 110862 | 34748870 ~ 34761158 (+) |
| LOC110510158 | LOC106563717 | coding | downstream | 125674 | 34763682 ~ 34782858 (+) |
| LOC110510159 | LOC106563679 | coding | downstream | 146311 | 34784319 ~ 34825545 (+) |
| G2177518 | NA | non-coding | upstream | 20946 | 34612829 ~ 34614298 (+) |
| G2177476 | NA | non-coding | upstream | 54192 | 34580644 ~ 34581052 (+) |
| G2177470 | LOC106563688 | non-coding | upstream | 70114 | 34552309 ~ 34565130 (+) |
| G2177471 | NA | non-coding | upstream | 88658 | 34546072 ~ 34546586 (+) |
| G2177515 | NA | non-coding | upstream | 95487 | 34539270 ~ 34539757 (+) |
| G2177537 | NA | non-coding | downstream | 17435 | 34655443 ~ 34657869 (+) |
| G2177532 | NA | non-coding | downstream | 24265 | 34662273 ~ 34662564 (+) |
| G2177548 | NA | non-coding | downstream | 37793 | 34675801 ~ 34676298 (+) |
| G2177606 | NA | non-coding | downstream | 124789 | 34762797 ~ 34763001 (+) |
| G2177614 | NA | non-coding | downstream | 131793 | 34769801 ~ 34770015 (+) |
| G2177424 | NA | other | upstream | 174475 | 34359624 ~ 34460769 (+) |
| LOC110510132 | rin1 | other | upstream | 403061 | 34227307 ~ 34236487 (+) |
| LOC110510125 | LOC106563697 | other | upstream | 499845 | 34105921 ~ 34135553 (+) |
| cxxc5a | LOC106563628 | other | upstream | 1399709 | 33212994 ~ 33235535 (+) |
| LOC110509425 | LOC106563572 | other | upstream | 2509166 | 32115629 ~ 32150579 (+) |
| ndufa2 | ndua2 | other | downstream | 867840 | 35505848 ~ 35507048 (+) |
| G2179418 | NA | other | downstream | 1213646 | 35851654 ~ 35856462 (+) |
| G2179454 | LOC106602907 | other | downstream | 1274482 | 35912490 ~ 35925031 (+) |
| G2180218 | LOC106563757 | other | downstream | 2040563 | 36678571 ~ 36680297 (+) |
