leap-2b (leap-2b)


Basic Information

Item Value
gene id leap-2b
gene name leap-2b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34684417 ~ 34685804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124465.1
gagagagggatggtataTAAGCGGAGTTCTCCAAAAGAACGTTTGCTACGCTAGTTAGAAACAGACACctagctgcctgccatccagcacCTTTCACCGAATTTTCCAGAGCATATCTCACCATGCACGGTCAAAACCACAGCAAAGCAACGCAAGGTGTGTGTCTGGTGGCTCTGATTCTTATGCATCAGGTGTGTGCTAGTCCAATAGGAAGCCATGATTCAAGGCTGAGTCTGCAGCAGGGCACCAAGCTACTGGAACGGAGAACCCGCATGACCCCTCTGTGGAGGTTCATGGGTACCAAGCCCACTGGGGCCTACTGCCGAGACCATTTTGAGTGCTCCACCCAAATCTGCAGAAGGGGCCACTGTGCCCTCAGTGGGGCAGTTCATTCCTAGAAGTGGAGGAGCCAGAGGTTTCTTCTCACCAATCAGAGAACATTGACTAATGTTTTAATGGAGTTGATTTACGTAACAAGCATGTCAAGAATCTTCCCAGACATGGTGAAACTTATCAGATtgcaaactgtttttttttttatgtaggcCAGAGATGAAACATTTTGAAATTAGAGGAATGGTTTTATCAACTTGGTGGATATTGATCTCACATGTACTTGAAAGCACTTTAACTTACCATTTCTGagtatgtactgtataatactacaaCTCAAGAGCGTTgaaactatttttattttattttgtattttatccccattagctgtttgcgaaagcagcagctattcttcttGGGGTCCACACAATGATCACCATTAAACATTGCTGTAAATGTCCTACATGAAGACTGACATCCTATACAACAGGGTTTAGTTTAAATGTTTAGTATGCACTGTTAAGTGTGTACTGAAGTGAATATGAACCATTCATCCATGTGCTGTACTGTAACGATTCTTGCTTAATGTCTTTGTAGTGATTTGTATAGAAATAGTATAACGAAGAGGCAAAATGTCAGATGTATTCGAAAAAGGTAATACACCAAAGATTTGCGCACAAATTAATGCAAGGGTGAAATATTTGCATAAGAGCGTACTGTAAAGGAATCAATGTACTGTGCCTGTCTACACTTACATTGTTTAACAAGAGAAGACACACTTAAAGTTGCAAAAATAAAAGTACATTTCTGAT
>TU2489800
agagagagtgatagagtgagagagcgagagcgagagagagggatggtataTAAGCGGAGTTCTCCAAAAGAACGTTTGCTACGCTAGTTAGAAACAGACACctagctgcctgccatccagcacCTTTCACCGAATTTTCCAGAGCATATCTCACCATGCACGGTCAAAACCACAGCAAAGCAACGCAAGGTGTGTGTCTGGTGGCTCTGATTCTTATGCATCAGGTGTGTGCTAGTCCAATAGGAAGCCATGATTCAAGGCTGAGTCTGCAGCAGGGCACCAAGCTACTGGAACGGAGAACCCGCATGACCCCTCTGTGGAGGTTCATGGGTACCAAGCCCACTGGGGCCTACTGCCGAGACCATTTTGAGTGCTCCACCCAAATCTGCAGAAGGGGCCACTGTGCCCTCAGTGGGGCAGTTCATTCCTAGAAGTGGAGGAGCCAGAGGTTTCTTCTCACCAATCAGAGAACATTGACTAATGTTTTAATGGAGTTGATTTACGTAACAAGCATGTCAAGAATCTTCCCAGACATGGTGAAACTTATCAGATtgcaaactgtttttttttttatgtaggcCAGAGATGAAACATTTTGAAATTAGAGGAATGGTTTTATCAACTTGGTGGATATTGATCTCACATGTACTTGAAAGCACTTTAACTTACCATTTCTGagtatgtactgtataatactacaaCTCAAGAGCGTTgaaactatttttattttattttgtattttatccccattagctgtttgcgaaagcagcagctattcttcttGGGGTCCACACAATGATCACCATTAAACATTGCTGTAAATGTCCTACATGAAGACTGACATCCTATACAACAGGGTTTAGTTTAAATGTTTAGTATGCACTGTTAAGTGTGTACTGAAGTGAATATGAACCATTCATCCATGTGCTGTACTGTAACGATTCTTGCTTAATGTCTTTGTAGTGATTTGTATAGAAATAGTATAACGAAGAGGCAAAATGTCAGATGTATTCGAAAAAGGTAATACACCAAAGATTTGCGCACAAATTAATGCAAGGGTGAAATATTTGCATAAGAGCGTACTGTAAAGGAATCAATGTACTGTGCCTGTCTACACTTACATTGTTTAACAAGAGAAGACACACTTAAAGTTGCAAAAATAAAAGTACATTTCTGATAA
>TU2489801
agagagagtgatagagtgagagagcgagagcgagagagagggatggtataTAAGCGGAGTTCTCCAAAAGAACGTTTGCTACGCTAGTTAGAAACAGACACctagctgcctgccatccagcacCTTTCACCGAATTTTCCAGAGCATATCTCACCATGCACGGTCAAAACCACAGCAAAGCAACGCAAGGTGTGTGCTAGTCCAATAGGAAGCCATGATTCAAGGCTGAGTCTGCAGCAGGGCACCAAGCTACTGGAACGGAGAACCCGCATGACCCCTCTGTGGAGGTTCATGGGTACCAAGCCCACTGGGGCCTACTGCCGAGACCATTTTGAGTGCTCCACCCAAATCTGCAGGGGCCACTGTGCCCTCAGTGGGGCAGTTCATTCCTAGAAGTGGAGGAGCCAGAGGTTTCTTCTCACCAATCAGAGAACATTGACTAATGTTTTAATGGAGTTGATTTACGTAACAAGCATGTCAAGAATCTTCCCAGACATGGTGAAACTTATCAGATtgcaaactgtttttttttttatgtaggcCAGAGATGAAACATTTTGAAATTAGAGGAATGGTTTTATCAACTTGGTGGATATTGATCTCACATGTACTTGAAAGCACTTTAACTTACCATTTCTGagtatgtactgtataatactacaaCTCAAGAGCGTTgaaactatttttattttattttgtattttatccccattagctgtttgcgaaagcagcagctattcttcttGGGGTCCACACAATGATCACCATTAAACATTGCTGTAAATGTCCTACATGAAGACTGACATCCTATACAACAGGGTTTAGTTTAAATGTTTAGTATGCACTGTTAAGTGTGTACTGAAGTGAATATGAACCATTCATCCATGTGCTGTACTGTAACGATTCTTGCTTAATGTCTTTGTAGTGATTTGTATAGAAATAGTATAACGAAGAGGCAAAATGTCAGATGTATTCGAAAAAGGTAATACACCAAAGATTTGCGCACAAATTAATGCAAGGGTGAAATATTTGCATAAGAGCGTACTGTAAAGGAATCAATGTACTGTGCCTGTCTACACTTACATTGTTTAACAAGAGAAGACACACTTAAAGTTGCAAAAATAAAAGTACATTTCTGATAA

Function

NR:

description
liver-expressed antimicrobial peptide 2B precursor

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124465.1 False 1145 mRNA 0.41 3 34684419 34685771
TU2489800 False 1180 lncRNA 0.41 3 34684417 34685804
TU2489801 True 1142 lncRNA 0.41 3 34684417 34685804

Neighbor

gene id symbol gene type direction distance location
LOC110510152 LOC106563684 coding downstream 55117 34619958 ~ 34629302 (-)
hif1al2 LOC106563688 coding downstream 119278 34546781 ~ 34565141 (-)
trnas-gcu-266 NA coding downstream 138034 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 299835 34362509 ~ 34384584 (-)
LOC110510135 LOC106563696 coding downstream 341959 34338911 ~ 34342460 (-)
LOC110510156 LOC106563681 coding upstream 30168 34715939 ~ 34727232 (-)
LOC110510161 LOC106563678 coding upstream 124100 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 165425 34851196 ~ 34862503 (-)
LOC110510171 NA coding upstream 279358 34965129 ~ 34979665 (-)
LOC110510172 dach2 coding upstream 318145 35003916 ~ 35289538 (-)
G2178326 NA non-coding downstream 5512 34678584 ~ 34678907 (-)
G2178313 NA non-coding downstream 23175 34658175 ~ 34661244 (-)
G2178312 NA non-coding downstream 29799 34654078 ~ 34654620 (-)
G2178283 NA non-coding downstream 70164 34612840 ~ 34614255 (-)
G2178276 NA non-coding downstream 94791 34589170 ~ 34589628 (-)
G2178362 NA non-coding upstream 60386 34746157 ~ 34746483 (-)
G2178374 NA non-coding upstream 74992 34760763 ~ 34762133 (-)
G2178377 NA non-coding upstream 77475 34763246 ~ 34763490 (-)
G2178380 NA non-coding upstream 80141 34765912 ~ 34766184 (-)
G2178383 NA non-coding upstream 86941 34772712 ~ 34772942 (-)
G2177991 cfb other downstream 537100 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1172093 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2039847 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2250778 32395346 ~ 32433641 (-)
G2178372 NA other upstream 117420 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1276213 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1818702 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1820769 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2291383 36975909 ~ 36979761 (-)

Expression


Co-expression Network