LOC110510156 (LOC106563681)


Basic Information

Item Value
gene id LOC110510156
gene name LOC106563681
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34715939 ~ 34727232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591513.2
AAAGCCTTTGTGTTCGGCAACAATGACACGTGGGCGATGTTGAATTTGGACAGTTTAGTCCTTGCAGCCCTCCCACTCAACAGAGAAAATATTGACAGTGTTATGGATAACGGAGTTGGTGGCCCCCCTCATCCACCAATTGTATTTTATGGCAACTCGAGATCAATTCAGACTTGTCGTTGAACAAAGACATATCATGGCCGCATCAAACAGCCCACGAGACGTCCAGTCAAAGTTATGGGTCCCAATGATCGTTATTGTCGTGGTTGTACTGCAAGTAGCTTCGACAACTGGACTCCTCGTCTTCTTGAACATGTCAGTTGCTCAGGTGAGGAGTCAAGGGGTGGCTGAGGAGTTACGTTGCCTGGGGCTCCTTAATGCCCTGGAGAAAGACCAGGAGATACCGGAGTCTCTGGTTCAACTGTTTGGGGAGCCCTGCATCAAACTGGCCCAGGGAATAAGAGCCTATGTCACCAAGGTGACAGAAAACATTATTGCAAAACACGCCGTTCCAGAGCCCAGTGCCCAGCCCAGAACCAAGCCCGTCAGTTCTGCAGGGCATCAGAAGCCCTCTGCTCACCTCACACTCCGAGACAGTAGCTTACAGGGCCCTATATCCCTGGCCCCTCAGAAAGACCTGCATCAGTCCTGCCGCCACCCGGTCCGGTCCTGGGGCAACCAGAGTTTCGGCTCCCATCTCCACAACATGACCCTGTCTCATGGACGCCTACGCATCCCCCGGTCCGGACGTTATTACTTGTATGCCCAGGTGTACTTCCGCTATCCCTCCCTCACCCACGAGGGGGGTAACCACCATGGGGGCTCCTCCAGCTACCAGCTGGTCCAGTGTGTCTACAAGAAGACGTCATACGCCAAGCCCCTTCAGTTGCTGAAGGGGGTGGGCACCAAGTGCTGGGCGCCTGACACTGAGTATGCCCTCCACTCTGTCTACCAGGGAGGCCTGTTTGAGCTGAGGGCCGGGGATGAGATCTTTGTTTCTGTGTCGTCGCCTACAGCCGTGCACGCAGAGGACTCATCCAGCTATTTTGGGGCATTTCGATTTGACCCATGAGCATGGAGGTTAAGGAgggaaaagctctctcacacaagAGGATGCtaaacatgtactgtacatagactACAAATCACCATGGTTCTGACATAGCTAGCCACAGACTGGTGCACAGGCCATTAATAAAACTGGCTCACAGATGGCTACATTAGAACTATATATTTCAATAAGAGTGGTGCGGACTAATTGGCATCCCGCTTTGCTACTGTAGCACAATCACAAATAAGAATCTTCAGCACTGAGAGGGATAGTGGAAATGCATAAGACTAAGGAATGTGTGAATTCTTCGATATACAGTATGGCATGCAGCACTACCAACTACCAACGATAACTTTAGCTCTGGGGTCCATATGAAACCACTCTTCAGCCCTGATCTCTCTAGACATACCGGTTGCTTCCCACAATGTACATGTTGCCCCAAGTCTGGGATTTCCAAGACTAGCTCTGATCTGACCTGTAACTTACACTAAATTTGATTTAAATTTTAACATTTGTTTTTGATTTAAACAAGCACTCTTGCACCAGGGTTTTATTTTAGTGTTGAATGTACCTATTGAGAATACAAGCTCTAACTATAGCTAATCATGGATGATTAACAAACAATGGGCTCAAGGGGTAAAAACAAGGAATGGTGAAAGTTCTTCTTGATCCTGGCATAATCTTCTCATTTGTACAAAACCTTATTTAATGGGCGTCGGTAAGGCTCGAAGGGATTTTTGGTAATGGCCCTCTTGGGATTCCTTCATCATACTGAGAATTCTACTATTTATTCCGTTTagcatagggcggtgcacaattggcccagcgtcgtccgagttaggggagggtttggctggggagGCTTTACAAATagtccatcattgtaaataagaatgtgttcttaactgacgtgcctagttaaataaaatagcaATGAACTGCTTTTTTTCAGCAACAACTTTTGATTGTTTTCTGTGGGTGGAGGTATTACTGATTACTGCAGTTAACCAGATATCAGTACTAGTCTTCAGTCATACTCCACTGGACATATGTATCAATTTAACGTCtgtttgattcaaccagtgtgtgcccagtgggacagaGATTCAGCACTGGACAGTAACTTAGTACTACTGTAGACGACTAGCtaataatactataatagtaAGTATAACgcaaacatctagcaacccaaaggttgcttgtttgaatctcatcactgacaactttagcattttagctaattagcaactacttacttttttttttgcaactttgcaactacttagcatgttggCTAACTCTAACCCGTTTAgctaaccttcccctaaccctaacctaactaactaactttaACCCCTAGAGCGAAtgttagccaactagctaaaaTTAGCGGTAGCCaactagccacctagctaacgttaaccgCAACAAAAAATTGCCATAATGTCATACGAAATGAAATGGATATCCCACTAAttaacataccatacgaaacataacatatcatgctaaatacagaataatacaaaatactCCGAGACCATGTTGGCGACAAAGCCTCTACAATTAAGACTGTTGTAATGTTCGCCAAGTTACTCTCAAAGTAAGACCCTAAGTCTGCTCCCTAACAAAGCTGAGTGATGGTAAGAGCTGAAACATGGATTTTTAAAAAAAGCATGAAATTGCCTTGGTCTGTTTTCAAAATATCACTTGTGTCATGACAGCGTTTCCACACGTTGTGtgtcaaaaatattatttgtattttattctgtTGTATTTCATTAAATTCTTAGCCTACTATAAAATATGTATGTTGATTGTGATCAGGGTAGCCTACATGTGTCTTGTCTGTGTAACGAACAAAATAACTATGGATTTCATGTGCATGGCGTAGCCATCTAGCCCATAGACTGCACAGACCAGTCACATAATTAAACCCAATATATGCCATTCTATTaatttgaaaatacattttatttgtcttATGTTTTTTAGGATTTGCCTAAAAACAAATTAATAATGGATTTCTTTGTGACGGTGTAGTCTATATTCAATGGATTTATTAAAATACTATAGATGCCCACCCACATCTACTCCACCCCTGAACTTGCCTTCATGTGCACAGgcgattaaaaaaaaaagagaggccTATCTCGGCAAGAATGTGGTAAAAATTAGATAGTATGAATTGGGTTTTAAAAAACATTGCCCGTTTTATTTTTACAGGCAACATACCTGTGgg

Function

NR:

description
tumor necrosis factor ligand superfamily member 10-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591513.2 True 3296 mRNA 0.43 5 34715939 34727232

Neighbor

gene id symbol gene type direction distance location
leap-2b leap-2b coding downstream 30168 34684417 ~ 34685804 (-)
LOC110510152 LOC106563684 coding downstream 86637 34619958 ~ 34629302 (-)
hif1al2 LOC106563688 coding downstream 150798 34546781 ~ 34565141 (-)
trnas-gcu-266 NA coding downstream 169554 34546304 ~ 34546385 (-)
LOC110510139 LOC106563695 coding downstream 331355 34362509 ~ 34384584 (-)
LOC110510161 LOC106563678 coding upstream 82639 34809871 ~ 34814939 (-)
LOC110510165 atg4a coding upstream 123964 34851196 ~ 34862503 (-)
LOC110510171 NA coding upstream 237897 34965129 ~ 34979665 (-)
LOC110510172 dach2 coding upstream 276684 35003916 ~ 35289538 (-)
LOC118945291 NA coding upstream 622133 35349365 ~ 35368562 (-)
G2178326 NA non-coding downstream 37032 34678584 ~ 34678907 (-)
G2178313 NA non-coding downstream 54695 34658175 ~ 34661244 (-)
G2178312 NA non-coding downstream 61319 34654078 ~ 34654620 (-)
G2178283 NA non-coding downstream 101684 34612840 ~ 34614255 (-)
G2178362 NA non-coding upstream 18925 34746157 ~ 34746483 (-)
G2178374 NA non-coding upstream 33531 34760763 ~ 34762133 (-)
G2178377 NA non-coding upstream 36014 34763246 ~ 34763490 (-)
G2178380 NA non-coding upstream 38680 34765912 ~ 34766184 (-)
G2178383 NA non-coding upstream 45480 34772712 ~ 34772942 (-)
LOC110510135 LOC106563696 other downstream 374126 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 568620 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1203613 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2071367 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 2282298 32395346 ~ 32433641 (-)
G2178372 NA other upstream 75959 34792330 ~ 34809382 (-)
G2179862 NA other upstream 1234752 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1777241 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1779308 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 2249922 36975909 ~ 36979761 (-)

Expression


Co-expression Network