Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110510158 |
| gene name | LOC106563717 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 34763682 ~ 34782858 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021591516.2 | False | 3843 | mRNA | 0.44 | 4 | 34763682 | 34782858 |
| XM_036968245.1 | False | 4823 | mRNA | 0.43 | 3 | 34776715 | 34782858 |
| TU2489067 | False | 200 | lncRNA | 0.44 | 1 | 34776892 | 34777091 |
| TU2489068 | True | 203 | lncRNA | 0.41 | 1 | 34777205 | 34777407 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510157 | LOC106563680 | coding | upstream | 2524 | 34748870 ~ 34761158 (+) |
| LOC110510155 | LOC106563682 | coding | upstream | 48136 | 34703325 ~ 34715546 (+) |
| LOC110510153 | LOC106563683 | coding | upstream | 102433 | 34638233 ~ 34661249 (+) |
| LOC118945290 | NA | coding | upstream | 125674 | 34635244 ~ 34638008 (+) |
| slc7a3a | LOC106563685 | coding | upstream | 152392 | 34598826 ~ 34611290 (+) |
| LOC110510159 | LOC106563679 | coding | downstream | 1461 | 34784319 ~ 34825545 (+) |
| si:ch73-362m14.2 | LOC106563676 | coding | downstream | 32848 | 34815706 ~ 34822942 (+) |
| LOC110510163 | LOC106563675 | coding | downstream | 43386 | 34826244 ~ 34844491 (+) |
| LOC110510164 | LOC106563716 | coding | downstream | 63593 | 34846451 ~ 34850826 (+) |
| LOC110510166 | LOC106563673 | coding | downstream | 81248 | 34864106 ~ 34869495 (+) |
| G2177606 | NA | non-coding | upstream | 681 | 34762797 ~ 34763001 (+) |
| G2177548 | NA | non-coding | upstream | 87384 | 34675801 ~ 34676298 (+) |
| G2177532 | NA | non-coding | upstream | 101118 | 34662273 ~ 34662564 (+) |
| G2177537 | NA | non-coding | upstream | 105813 | 34655443 ~ 34657869 (+) |
| G2177518 | NA | non-coding | upstream | 149384 | 34612829 ~ 34614298 (+) |
| G2177562 | NA | non-coding | downstream | 9479 | 34792337 ~ 34808689 (+) |
| G2177629 | LOC106563678 | non-coding | downstream | 27035 | 34809893 ~ 34813858 (+) |
| G2177636 | NA | non-coding | downstream | 68390 | 34851248 ~ 34852129 (+) |
| G2177565 | NA | non-coding | downstream | 99529 | 34882387 ~ 34883032 (+) |
| LOC110510169 | NA | non-coding | downstream | 104825 | 34887683 ~ 34895727 (+) |
| G2177424 | NA | other | upstream | 302913 | 34359624 ~ 34460769 (+) |
| LOC110510132 | rin1 | other | upstream | 531499 | 34227307 ~ 34236487 (+) |
| LOC110510125 | LOC106563697 | other | upstream | 628283 | 34105921 ~ 34135553 (+) |
| cxxc5a | LOC106563628 | other | upstream | 1528147 | 33212994 ~ 33235535 (+) |
| LOC110509425 | LOC106563572 | other | upstream | 2637604 | 32115629 ~ 32150579 (+) |
| ndufa2 | ndua2 | other | downstream | 722990 | 35505848 ~ 35507048 (+) |
| G2179418 | NA | other | downstream | 1068796 | 35851654 ~ 35856462 (+) |
| G2179454 | LOC106602907 | other | downstream | 1129632 | 35912490 ~ 35925031 (+) |
| G2180218 | LOC106563757 | other | downstream | 1895713 | 36678571 ~ 36680297 (+) |
| G2177618 | NA | non-coding | upstream | 270 | 34776392 ~ 34776622 (+) |
| G2177616 | NA | non-coding | upstream | 3773 | 34772830 ~ 34773119 (+) |
| G2177614 | NA | non-coding | upstream | 6877 | 34769801 ~ 34770015 (+) |
| G2177621 | NA | non-coding | downstream | 1320 | 34778727 ~ 34778976 (+) |
