LOC110510159 (LOC106563679)



Basic Information


Item Value
gene id LOC110510159
gene name LOC106563679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34784319 ~ 34825545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021591517.2
GAAAGCCGACGCTGCCAAggaaacacacatgcaggcataGGGAATCCAGATTTCAGCATCGTTCTCCATTCACTTGACGTCGACAATGCATCGATAATGATGGTAGCTAGCAGCAATGCCTTCGATCTATTCCATGCGTGATGTCTTAATAGCTGCCAAATAATACAGCCAAAGAGTGGAGGTAAAACAAGGTTAAGAAAAACAACCAGTGgtgagtgtgtgactgtgtgtagggGGCAGCCGCCATGCCGCTGGTTAAAAGATGCATCGAGCCCAGGCACCTGTGCCGTGGAGCCGTGCCGGACGGGGTCACCAGCGAGCTGGAGTGTGTCACTAACAGCACCCTGGCAGCCATCATCAAACAGTTGGGGGGCCTGAGTCGACATGCAGAGGATATTTTTGGAGAGCTGTTCAATGAGGCCAACAGCTTCTACATGAGAATGAACAGCCTCCAAGAGAGAGTGGACCTGCTGGCGGTCAAAGTCACCCAGCTGGACTCCACTGTGGAGGAGGTTTCGCTGCAGGACATCAACATGAGGAAAGCCTTCAAGAGCTCCACCATCCAAGACCAGCAGGTGGTGTCCAGGAACTCCATCCTCAACCCTGTCATGGAGATGTACCATCGCTGTGACAAACCTCCACCCCTCAACATCCTTAGCCCCTACAGGGATGACAACAAGGATGGTCTGAAGTTCTACACAGACCCATCCTACTTCTTTAATCTGTGGAGAGAGAAGATGATCCAGGCAACAGAAAACAAGCGGAAGGAGAAGAGGCGGCAGAAGGCAGGTGACAAGGAGCAGAAACAGGTGGAGGACCCCAGCCGGGAGGTGAAGAAGGTGAGGAAGGCCCGTAACCGTCGTCAGGAGTGGAACATGATGGCATACGACAAGGAGTTCCGTCCAGAAAACCGCCTCACGCCTTCACCCTACCATGGCATGTCCTCTGAGGgatctctctctccagacagGTCTGGTATGTCTGATGAGCTGTCCTACCCTGCCAGCCCTAACCACCCACCCCAGGAGGGAGCTGTCTTGGGTCCTGATGGGAAGGAGCACCTCACAGGCCTCAACCAGACCCAGTCTCTGGACCGGGCCTACCGACCCCCTGCTGCCGGCACCGCTGCAGCCCAAGCCCGCCAGCACTCCCTGGGCCGCGTGCAGCCCAACCAAGGACCCACACCCACAGACCCCTCCCTAAACGGACCCCGGCCTGCAGCTGCCAAAGAGGCTAGTGGTCACCAGATGCCAGAGCACTTTATCCCTCCGGCCCcacccccacctcctcccctcatcccctcaGCCCAGACGGCCTTCGACAGCACAGCCGGGCCTCCCACCCTGGCCCCTGCAGGTCTCCCCACCCTGGCCCCTGGCACCATGGCCACCCTGTCCCGCCCATACAGCCCCTCACCCCCTCCACCCCCGCCCGCCAGCTacttcccctctccatcccacCCTGTCACTGGGGGACCCCCTGTtgcccctcctccacccccacctGGTGGCCCCCCAACATTCGCTCCCTCCCCAGCCCATGCCATGCACCCCTCTGGGGGCACACTGCCAAGGAAGGGCAAGGTGCTAGGCATCCCGATAAGCGACGCACGGAGCGACCTGCTGTCAGCCATCCGCAGAGGCATCCAGCTGAGGAAGGTGCAGGAGCAGCGTGAGCAGGAAGCCAAGCGGGAGCCTGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGTATCGCAGTGGACTACAGCGAATCAGATGAGGACTCGGAGCCTGAGGAGAACGAGTGGTCAGACTGAggcggagaggagagggtggggcAGAGCAGAGGGCTAGGACTTACTGTACTCACCTACATACTGCTGCTATTCCAataccaggacacacacacacagcatactaCATCTCGATTGACCTCTTGTTAGGGAAAGTAGATGAGACACTTACACAGTATGACAGTATCCATTAACTAGTCAGATACTGtatggggaaggaggggaaggagaggaagggagaggaggaagccacAGTGGGTCTGGGGGGGGGATCTGTTGGATCCAAGCACAGCAAGCTTATacgtacatacagtgcattcagaaagtattcagaccccttgagtttttccacattttgttatgttacagccttattctaaaatgtatttaatagttGTTttcccatcatcaatctacacacaatacccataatgacaaagcaaaacgtttttttagaattgtttgcaaAAATTAATAATAAATAGAAAAATTAAATCCCacttacgtaagtattcagaccctttactcagtactttgttgaagcaccattggcagcgattacagcctcgagtcttcttgggtatgacgctacaagcatagcacacctgtattcaggtaatt
>XM_036968244.1
attactggttgctgcgggaaaaaaaggaggaaggtcaaaaggggggtgagtgtgtgactgtgtgtagggGGCAGCCGCCATGCCGCTGGTTAAAAGATGCATCGAGCCCAGGCACCTGTGCCGTGGAGCCGTGCCGGACGGGGTCACCAGCGAGCTGGAGTGTGTCACTAACAGCACCCTGGCAGCCATCATCAAACAGTTGGGGGGCCTGAGTCGACATGCAGAGGATATTTTTGGAGAGCTGTTCAATGAGGCCAACAGCTTCTACATGAGAATGAACAGCCTCCAAGAGAGAGTGGACCTGCTGGCGGTCAAAGTCACCCAGCTGGACTCCACTGTGGAGGAGGTTTCGCTGCAGGACATCAACATGAGGAAAGCCTTCAAGAGCTCCACCATCCAAGACCAGCAGGTGGTGTCCAGGAACTCCATCCTCAACCCTGTCATGGAGATGTACCATCGCTGTGACAAACCTCCACCCCTCAACATCCTTAGCCCCTACAGGGATGACAACAAGGATGGTCTGAAGTTCTACACAGACCCATCCTACTTCTTTAATCTGTGGAGAGAGAAGATGATCCAGGCAACAGAAAACAAGCGGAAGGAGAAGAGGCGGCAGAAGGCAGGTGACAAGGAGCAGAAACAGGTGGAGGACCCCAGCCGGGAGGTGAAGAAGGTGAGGAAGGCCCGTAACCGTCGTCAGGAGTGGAACATGATGGCATACGACAAGGAGTTCCGTCCAGAAAACCGCCTCACGCCTTCACCCTACCATGGCATGTCCTCTGAGGgatctctctctccagacagGTCTGGTATGTCTGATGAGCTGTCCTACCCTGCCAGCCCTAACCACCCACCCCAGGAGGGAGCTGTCTTGGGTCCTGATGGGAAGGAGCACCTCACAGGCCTCAACCAGACCCAGTCTCTGGACCGGGCCTACCGACCCCCTGCTGCCGGCACCGCTGCAGCCCAAGCCCGCCAGCACTCCCTGGGCCGCGTGCAGCCCAACCAAGGACCCACACCCACAGACCCCTCCCTAAACGGACCCCGGCCTGCAGCTGCCAAAGAGGCTAGTGGTCACCAGATGCCAGAGCACTTTATCCCTCCGGCCCcacccccacctcctcccctcatcccctcaGCCCAGACGGCCTTCGACAGCACAGCCGGGCCTCCCACCCTGGCCCCTGCAGGTCTCCCCACCCTGGCCCCTGGCACCATGGCCACCCTGTCCCGCCCATACAGCCCCTCACCCCCTCCACCCCCGCCCGCCAGCTacttcccctctccatcccacCCTGTCACTGGGGGACCCCCTGTtgcccctcctccacccccacctGGTGGCCCCCCAACATTCGCTCCCTCCCCAGCCCATGCCATGCACCCCTCTGGGGGCACACTGCCAAGGAAGGGCAAGGTGCTAGGCATCCCGATAAGCGACGCACGGAGCGACCTGCTGTCAGCCATCCGCAGAGGCATCCAGCTGAGGAAGGTGCAGGAGCAGCGTGAGCAGGAAGCCAAGCGGGAGCCTGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGTATCGCAGTGGACTACAGCGAATCAGATGAGGACTCGGAGCCTGAGGAGAACGAGTGGTCAGACTGAggcggagaggagagggtggggcAGAGCAGAGGGCTAGGACTTACTGTACTCACCTACATACTGCTGCTATTCCAataccaggacacacacacacagcatactaCATCTCGATTGACCTCTTGTTAGGGAAAGTAGATGAGACACTTACACAGTATGACAGTATCCATTAACTAGTCAGATACTGtatggggaaggaggggaaggagaggaagggagaggaggaagccacAGTGGGTCTGGGGGGGGGATCTGTTGGATCCAAGCACAGCAAGCTTATacgtacatacagtgcattcagaaagtattcagaccccttgagtttttccacattttgttatgttacagccttattctaaaatgtatttaatagttGTTttcccatcatcaatctacacacaatacccataatgacaaagcaaaacgtttttttagaattgtttgcaaAAATTAATAATAAATAGAAAAATTAAATCCCacttacgtaagtattcagaccctttactcagtactttgttgaagcaccattggcagcgattacagcctcgagtcttcttgggtatgacgctacaagcatagcacacctgtattcaggtaatt
>TU2489017
ATGCACCCCTCTGGGGGCACACTGCCAAGGAAGGGCAAGGTGCTAGGCATCCCGATAAGCGACGCACGGAGCGACCTGCTGTCAGCCATCCGCAGAGGCATCCAGCTGAGGAAGGTGCAGGAGCAGCGTGAGCAGGAAGCCAAGCGGGAGCCTGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGTATCGCAGTGGACTACAGCGAATCAGATGAGGACTCGGAGCCTGAGGAGAACGAGTGGTCAGACTGAggcggagaggagagggtggggcAGAGCAGAGGGCTAGGACTTACTGTACTCACCTACATACTGCTGCTATTCCAataccaggacacacacacacagcatactaCATCTCGATTGACCTCTTGTTAGGGAAAGTAGATGAGACACTTACACAGTATGACAGTATCCATTAACTAGTCAGATACTGtatggggaaggaggggaaggagaggaagggagaggaggaagccacAGTGGGTCTGGGGGGGGGATCTGTTGGATCCAAGCACAGCAAGCTTATacgtacatacagtgcattcagaaagtattcagaccccttgagtttttccacattttgttatgttacagccttattctaaaatgtatttaatagttGTTttcccatcatcaatatacacacaa

Function


NR:

description
wiskott-Aldrich syndrome protein family member 3-like

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021591517.2 False 2396 mRNA 0.55 9 34784319 34803941
XM_036968244.1 False 2230 mRNA 0.56 9 34793744 34803941
TU2489017 True 654 TUCP 0.52 3 34802939 34825545

Neighbor


gene id symbol gene type direction distance location
LOC110510158 LOC106563717 coding upstream 1461 34763682 ~ 34782858 (+)
LOC110510157 LOC106563680 coding upstream 23161 34748870 ~ 34761158 (+)
LOC110510155 LOC106563682 coding upstream 68773 34703325 ~ 34715546 (+)
LOC110510153 LOC106563683 coding upstream 123070 34638233 ~ 34661249 (+)
LOC118945290 NA coding upstream 146311 34635244 ~ 34638008 (+)
si:ch73-362m14.2 LOC106563676 coding downstream 11765 34815706 ~ 34822942 (+)
LOC110510163 LOC106563675 coding downstream 22303 34826244 ~ 34844491 (+)
LOC110510164 LOC106563716 coding downstream 42510 34846451 ~ 34850826 (+)
LOC110510166 LOC106563673 coding downstream 60165 34864106 ~ 34869495 (+)
cx04a cx04a coding downstream 66017 34869958 ~ 34870902 (+)
G2177621 NA non-coding upstream 5343 34778727 ~ 34778976 (+)
G2177618 NA non-coding upstream 7697 34776392 ~ 34776622 (+)
G2177616 NA non-coding upstream 11200 34772830 ~ 34773119 (+)
G2177614 NA non-coding upstream 14304 34769801 ~ 34770015 (+)
G2177629 LOC106563678 non-coding downstream 5952 34809893 ~ 34813858 (+)
G2177636 NA non-coding downstream 47307 34851248 ~ 34852129 (+)
G2177565 NA non-coding downstream 78446 34882387 ~ 34883032 (+)
LOC110510169 NA non-coding downstream 83742 34887683 ~ 34895727 (+)
G2178457 NA non-coding downstream 92258 34896199 ~ 34896628 (+)
G2177424 NA other upstream 323550 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 552136 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 648920 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1548784 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2658241 32115629 ~ 32150579 (+)
ndufa2 ndua2 other downstream 701907 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1047713 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1108549 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 1874630 36678571 ~ 36680297 (+)
G2180378 NA other downstream 2178405 36982346 ~ 36982614 (+)
LOC110510168 LOC106602948 coding downstream 47170 34872715 ~ 34876341 (+)
G2178461 NA non-coding downstream 73487 34899032 ~ 34899275 (+)

Expression



Co-expression Network