ik (ik)


Basic Information

Item Value
gene id ik
gene name ik
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35495285 ~ 35505716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591553.2
AAGACCATACCAATCGAATGTTGACTGTCATTTCCGTTTTCACagcacacatcaccatcaacaacATAGCTAGGTTATAAATCTAGCAATAGTTGATCGCaaactttttgttttacttgagTGAGACCAACTTCTTTCAACATGCCGGAACGAGAACGAGGAGAACGAGAGACGGAGTCGTTCTCCAACCCTCTGGCTCCGGATGGGCATGAGGTGGAGGACCACCGGTCAGCACTTCAGTCCAAGCTGACGAATGAGGACTTCCGTAAACTTTTGATGACCCCTCGTGCCACGCCCTCGTCAGCTCCCCCATCCTCCAAATCCTCCAGACATCATGAGATGCCCCGGGACTACAGCGAAGAGGATGATCCTGCAGCCCGTAGGCGGAAGAAGAAAAGTTATTACGCCAAGCTGCGTCAGCAGGAAGTGGAGAGGGAGCGGGAGTTAGCTGAGAAGTACCGTGACCGTGCCCGGGAGCGTCGTGATGGCGTCAACAAGGACTACGAGGAGACAGAGCTCATCAGCACAACAGCCAATTACAGAGCAGTGGGGCCCACAGCCGAGGCGGATAATTCAGCAGCTGAGAAGAGACGGCAGATGATCCAAGAGTCTAAGTTCTTGGGTGGTGACATGGAACACACTCACTTGGTGAAAGGGTTGGATTTTGCCCTTTTGCAGAAGGTACGTGCTGAGATCACCagcaaggagaaggaggaggaagatatgATTGAAAAAGTAACAAAGGAAGTCAAGAAAGAGATTGAACCAGAGGAGAAAATAGAGTTCAAGACACGTCTAGGAAGGAATATCTACCGGATCATGTTCAAGGGCCGCCAGTTTGAGAGGAATGAGCTGTTCCTGCCCGGCCGTATGGCATACGTAGTGGACCTGGAGGATGAGTACGCAGACACCGACATCCCCACCACACTGATCCGCAGCAAGGCCGACTGCCCCACCATGGAGGCTCAGACAACTCTCACCACCAACGACATTGTCATCAGCAAGCTGACCCAGATCCTGTCCTACCTGCGACAAGGGACCCGCAacaagaagatgaagaagaaggaAAAAGGAGGGGTGAAAATTGATGAGAAGAAAGTTCCAGGACCCGAGGCAGACGTAAGCATATTTGATGACATCGGGGACTACGCCCCATCTACCTCCAAGGCCATCCGGGACAAGGAGAAGGAACGCTaccgggagaaagagagggaccgggagcgggacagagagagggagcgggagagggagagagaaagagacaaggaggAAGAAAAGAGACGTCACAGCTACTTCGAGAAGCCCAGAGCAGATGACGATGAGACCGTGGAGACTGAGACAGGTCCAGGATCAGTGAAGGACCAGATCAAGCTGATCAATGAGAAGTTTGCAGCAACTCCCCAGTGGCCAGGAGAAACTGCTGGGTCGCGTGGCCGTAAAGAGGAGAAGCTCGGAGACTTCTTTGGCATGTCCAACAGCTATGCTGAGTGTTACCCAGCTACtATGGACGACTTGGCTGTGGACAGTGATGAAGAGGTGGACTACACCAAGATGGACCAGGGTAACAAGAAGGGTCCTCTGGGTCGCTGGGACTTTGACACTCAGGATGAATACAGTGAATACATGAACAACAAGGAGGCTCTGCCAAAGGCTGCTTTCCAGTATGGCATCAAGATGTCTGAGGGGAGGAAGACTCGCCGCTTCAAGGAGACCAATGAGAAGGCAGAGCTGGACAGGCAGTGGAAGAAGATCAGTGCTATCATTGAGAAGAGGAAGAAGGCTGAGGCAGATGGGGAGAAACCGAAGAGGCCAAAGTATTAATGTTCTCCCGTCTTGCATAATTTGGAACATGTTGAAAATCTTGCAATATATTGTATGCTAAAAATCCTGTTTGTATTTTGTGGAATACTAGATTGTGTATTATGATTACTTTATCTTTTGTCTTAGACATGTAACCATGGAAATGTAACCATGAATGAGAATTGGAGCACAATGTTATGCAGCTTTTACAAACTGTCAATGTCTCTTAGGTAACATCCAATAAATAAGAATGAAAAAAAAG

Function

symbol description
ik Acts upstream of or within heart contraction. Predicted to be active in nucleus. Is expressed in central nervous system; gut; and pharyngeal arch 3-7 skeleton. Orthologous to human IK (IK cytokine).

NR:

description
protein Red

GO:

id name namespace
GO:0060047 heart contraction biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K13109 IK, RED, RER; IK cytokine

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591553.2 True 2062 mRNA 0.50 19 35495285 35505716

Neighbor

gene id symbol gene type direction distance location
LOC110510173 LOC106563748 coding downstream 40760 35421966 ~ 35454525 (-)
LOC110510176 LOC106563749 coding downstream 73473 35399336 ~ 35421812 (-)
LOC118945291 NA coding downstream 126723 35349365 ~ 35368562 (-)
LOC110510172 dach2 coding downstream 205747 35003916 ~ 35289538 (-)
LOC110510171 NA coding downstream 515620 34965129 ~ 34979665 (-)
LOC110510180 tcof coding upstream 1331 35507047 ~ 35524067 (-)
LOC110510228 LOC106563789 coding upstream 300747 35804621 ~ 35817492 (-)
LOC110510227 LOC106563788 coding upstream 335427 35841143 ~ 35871517 (-)
LOC110510226 NA coding upstream 382275 35887991 ~ 35892734 (-)
LOC118945701 NA coding upstream 383601 35889317 ~ 35889390 (-)
G2179211 NA non-coding downstream 11404 35481055 ~ 35483881 (-)
G2179204 NA non-coding downstream 21920 35472628 ~ 35473365 (-)
G2179178 s226a non-coding downstream 27011 35403440 ~ 35468274 (-)
G2179169 NA non-coding downstream 106037 35388615 ~ 35389248 (-)
G2179167 NA non-coding downstream 107550 35387487 ~ 35387735 (-)
G2179228 NA non-coding upstream 35101 35540817 ~ 35542952 (-)
G2179286 LOC106602935 non-coding upstream 146333 35652049 ~ 35655274 (-)
G2179290 NA non-coding upstream 152682 35658398 ~ 35658614 (-)
G2179328 LOC106563737 non-coding upstream 188920 35694636 ~ 35792895 (-)
G2179340 NA non-coding upstream 202081 35707797 ~ 35708325 (-)
G2178372 NA other downstream 685982 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1153472 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1347966 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1982959 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2850713 32643402 ~ 32644572 (-)
G2179862 NA other upstream 456268 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 998757 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1000824 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1471438 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1476241 36981957 ~ 36982709 (-)

Expression


Co-expression Network