LOC110510180 (tcof)


Basic Information

Item Value
gene id LOC110510180
gene name tcof
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35507047 ~ 35524067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591551.2
CTTCACTACATGTCCCATCATGCACATCGAAGGGGGCGTAGTCGCTGTAAGTACATGGCAAATTCCTGCAGACAGTGAGGATGAAGAGCTCTTAATCAATAGATTAAAGCCATTTAATTGATTATTTTGATTGTGCTAGTCGTTCTACCTTAAAACGATGACTTCAAAGGACCCGAGTGCATCAAATAGTGCCTTGCTTTATTTGATTTATCAGCATTTAAAGGAGAATGGTTACCAGAAGGCTGCAAACGTGCTGAAAAAACATGTAACTCAGATGGAAGCACCAGAAGAGATCACCTCTTTACATGACATCTACACAAGTTGGACCAAGGTCTCGGAAATTGGACAAAATCCAAAACAAGAGCCTGAAGTGGATTCCACCACCCTGAAGAAGATTAAGGCCGATCCATCAACCAAAGAAGAAGATGTGGACTCAAAACCAATTGATTCTCTACCTCCTGCCCCCCACACACCCCAGGGTGCAACCCCAGAGAATGAGGAGCCGGTCCCAGAGGATGAGTTGTCATCTACTCCAGTCAGTAACGGGACAGTGGAAACATCAGCCCCTGTACCAGCGGTCACCCCTTTAAAACCAGCAGTGAGCTCAGACAGTGACTCTGAGAGCAAGGAGGAGATTCCCCTCACACAGGGAGATACTGTCACCCCAAAGGCCTCTTCAGCTGTCCCTACCACCACGCCCTCAAAACATGTAGACGGGAACAGCGAATCAGACAGTGAGAATGAGATTCATCCATCACAGACTGTTGTCATTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGACTCCAGCCATCCCCACAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACTAGCATCTACGGCTGCTCTTGTGAAACCAGCCAAGGCGATCCCAGCAGTCCCAGTAAAGCCCAGTGTAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCTTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGTGACAGCTCTGACtcagagagtgaggaggaggctCCTAAAAAGAAACCTGTGGCGACACCCAAAGCCAAGGCTGTGGCTGCAACTCTGGTCAAGACAGAAGCAGTGAAATCCAACCCTATTAAAAAACCAACAAACAGCTCAGACAGTGACAGTGATGACACTGAAGAGGAGGCTCCTGTAAAGAATCCTGCACTGACACCCAAAGCTGCTCCTGTGAAACCAGCCAAGGCGAGCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTACTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGTAGCCCCAGTGAAGCCCAGTGTAGTCACCCCCAGTCAGGCTAAAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGAAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAGGAGGAGGCTCCTAAGACTCCTGCTACAGTCATAGAGGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCagtaagactccagccacccctaCAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGTCACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACCTGCACAGACACCCAAAGCTGCTCCTGTGAAAACAGCCAAGGCGAGCCCAGTGAAACCCAGTGAAGTCACCCCGAGTCAGGCTAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAACCCAGTGCAGTCACCCCCAGTGCTCCCAAGACTCCTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGCGACAGCTCCGACTCAGACAGTGAGGAGGAGGCTCCTGTAAAGAAAACCACCCCCGTCTCAACCCCAAGCAAGGCCAAAGCCTCTCCTAAGACCCCAGCAGCAGCTGCTAAGATGGAGACTGACAGCTCAGATTCCTCTGACAGTGAGGATGAGGCTCCAGCCAGGCAGGCCCCTGCCAAGCCCACTCCCAGCCCGGCTAAAACCACACCCAAGGCCCCTGCTGCAGCTAAGAAGGCCGACAGCTCGGACAGTGATGAGTCTGACACTGAGGAGGGCAAGCCAGCTAAAAAGGTCACTGCTACCTCCGTAGCCAAACCTTCAACTCCAGTACAGGAGGAGGACAAAGATTCCTCAGACAGTGAGGATGAAGAAACACCATCGAAACCAGAATCCACACCATCTGAGAAATCTGTCACGCAAACCCAGGCAACGCCTCCTGCTGGCAAGGAGGGAGGTACAGAGGAACACATTCCAGCAGAGAAGGTTGAGGCTGTTCGAGTCATACCTACAACTGAAACAGCAGCTGAGGAAAACAGCGGTGATGATCCAACCGATACTGAAGGATCTCCTCCTGAAGTCCCTGAGGTGGACACACCCCCTGCCTCTGGGCCAGAGAGTGcaaaggaggaggaggtcccagAGAGTCCCCAGAAGGTCCTAAAGACGGACACTTCTTCAGAGAAGCCCAAGACAGAGGATCAGATAGTGACCTCTACAACATCAGAGGACAAGAGTGACACCCCTGAACTCCCATCAGAAGCCCCTGCTACGGCTGCTGAGATCAGAACTGCTTTAGAAGAGGAGTCAAAGGACTGTGTTGACCCAGTTATCACCAATTCAGCATCTGAAGACTCGGAGCCTGAAAAAGTGACCATTGAGACAGTTGTTGAGACAATccccacagagacagaggagccaAACACTGATACCCCAACACCTGGAtcaaagaggaagaggagtaaAGAGACAACGGACGCAACtcccaagaagaagaagatgaagaggaagaagaagggggAGGTTGAAGAGAATGGGCAGCCTGCAGTAGAGGAGGATGGGGATGAGTCCAGTCTGGACACAAAGGGGTTGGAGCTGACTCCATCAGACGATTCCAAGGTGGATACCATCCCGGCTTCAGAGTCTGACTCCACCACTCTTGTTCTGTCAGCAAAGTCACTCAAGAAAAGGAAAAGAAAGAGGGTGAAGAAAAGAAGAGGTGCGAAGGCCGAGAGGGAGTCACCGGAAGAGGACAAAAAAACAGACTTCgtcccaaaaaataaaaaaataaaaaagagcaAGAAAAACACAACATCCAACCTGACACCACCAACCAACAACCAGACCAAGGAAACTCCAAAGACCACAGCTGCTAAGAGGCCTCTTCCTCCCACCCCTGAGCCGGAGGAGCTAGAGACtcccaaaaagaagaagaagaagaaagtcGCAGAGAAAGGGAGCGCTGTGAAGGAAAATACAACTCCAGGCATTGAAACAAAGAAGAACAAGAAAGTTGCAGAGAAAAGGAGCGCTGTGAAGGAAAATACTCCAGGCATtgaaacaaagaagaagaaggcTGCTAAAGCTGAAAACACTGTGAAAGACTCTGCAATCTCAACTCCTGAACCGAGCCTTACACCAGAGACCCCAAAAAACAAAAAGAAGAAAAACAAGCTGACAGAGAAAAAGGAGAAAATGAAAACTGCATGGAAAACACCGGTAAAAGCCTCAACAGGACCTTTGCCTAACACAGAAGTCACTAAGAAAAATAAGTCCTCCAAAAAGAAATAATCCAATGGTGAAATTTCAGGAGATGGTGGATATCTTCTCCAGGGAATGAAATGGAGCTGCCAACGTCAATCAGAAGACCACCTCGATCACACTGGTGCCTGAGGTTTCAACCAAAAGAAGGGGAAACTGGAGTTCTGGCCTGTACATGTACTTTAGGTTCTACACATGTATTTTAGGGGAACATCTGTATTGTGTTACTAACAACACAATCTATGTTTTAACCATATATTCTATAAGCTTGCTAAACCAGGCATGTATTGACATGAAAAAGGCAAAATAATCATACCATTCTATTTGAAATGTTGAATAAACGGGACACAGAAACTAACACATTTGCACAGCCTGATGGAACGTAAACCCATCTTCAGTGTATTTGCCAAGTCCTAACCAATGGTAAAACAATCATTAGGTATTAATATGTCCTTGGTCTAGCATTGCTGTCTTGATAATGTTGTAGGGTGTAGTACTCTTGCATGTTGTGGGTTTTCATTTCTGTTCTTTAAGCTGTGAACACTTCCACATAATTGTGTGTAAGGTAAGGGATTGTTAGGACTCAAAATGGGGAACACTTGTAGCAAATGTCACTCCAAATACTGTACTATGCACCTCACGAATCCTATTGCTGAGCCCATAGCCTTGTGTTTTAGCACTTATGTTAGACCCATACACCTATGCAGAGGAAGGTTCTGGGGGACCAGAGGAGGATAGCTGATCTGACTGACTCAGAGAATTTGCTGAACTCCCATGTTTACAAACCAGTATTTGTGTCACATTCTTGTGAAAACAAACTTTTCTTCCATTTGTCATTTTCTGATTGTTCATTATCAATAAAAATGGTTTAATCTCTTAA
>XM_036968003.1
CTTCACTACATGTCCCATCATGCACATCGAAGGGGGCGTAGTCGCTGTAAGTACATGGCAAATTCCTGCAGACAGTGAGGATGAAGAGCTCTTAATCAATAGATTAAAGCCATTTAATTGATTATTTTGATTGTGCTAGTCGTTCTACCTTAAAACGATGACTTCAAAGGACCCGAGTGCATCAAATAGTGCCTTGCTTTATTTGATTTATCAGCATTTAAAGGAGAATGGTTACCAGAAGGCTGCAAACGTGCTGAAAAAACATGTAACTCAGATGGAAGCACCAGAAGAGATCACCTCTTTACATGACATCTACACAAGTTGGACCAAGGTCTCGGAAATTGGACAAAATCCAAAACAAGAGCCTGAAGTGGATTCCACCACCCTGAAGAAGATTAAGGCCGATCCATCAACCAAAGAAGAAGATGTGGACTCAAAACCAATTGATTCTCTACCTCCTGCCCCCCACACACCCCAGGGTGCAACCCCAGAGAATGAGGAGCCGGTCCCAGAGGATGAGTTGTCATCTACTCCAGTCAGTAACGGGACAGTGGAAACATCAGCCCCTGTACCAGCGGTCACCCCTTTAAAACCAGCAGTGAGCTCAGACAGTGACTCTGAGAGCAAGGAGGAGATTCCCCTCACACAGGGAGATACTGTCACCCCAAAGGCCTCTTCAGCTGTCCCTACCACCACGCCCTCAAAACATGTAGACGGGAACAGCGAATCAGACAGTGAGAATGAGATTCATCCATCACAGACTGTTGTCATTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGACTCCAGCCATCCCCACAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACTAGCATCTACGGCTGCTCTTGTGAAACCAGCCAAGGCGATCCCAGCAGTCCCAGTAAAGCCCAGTGTAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCTTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGTGACAGCTCTGACtcagagagtgaggaggaggctCCTAAAAAGAAACCTGTGGCGACACCCAAAGCCAAGGCTGTGGCTGCAACTCTGGTCAAGACAGAAGCAGTGAAATCCAACCCTATTAAAAAACCAACAAACAGCTCAGACAGTGACAGTGATGACACTGAAGAGGAGGCTCCTGTAAAGAATCCTGCACTGACACCCAAAGCTGCTCCTGTGAAACCAGCCAAGGCGAGCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTACTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGTAGCCCCAGTGAAGCCCAGTGTAGTCACCCCCAGTCAGGCTAAAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGAAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGTTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAAGATGAGTTAACTGTAAAGaAATCAACACAGACCCTGAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAGCCCAGTATAGTCACCCCCAGTCAGGCTACAGCTGCTCCCAAGACTCCTGCTGCAGAGAAGAAAGCACAGAGCTCTGACAGCGACAGCTCTGACTCAGACAGTGAGGAGGAGGCTCCTAAGACTCCTGCTACAGTCATAGAGGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCAGTAAGGCCTCAGCTCCCagtaagactccagccacccctaCAGCTCCCAGTAAAGCAGAGACCTCAGACAGTGTCACCTCAGACAGTGAAGAGGAGGTTACTGTCAAGAAACCTGCACAGACACCCAAAGCTGCTCCTGTGAAACCAGCCAAGGCGATCCCAGCAGCCCCAGTGAAACCCAGTGCAGTCACCCCCAGTGCTCCCAAGACTCCTGCTGCAGGGAAGAAAACACAGAGCTCTGACAGCGACAGCTCCGACTCAGACAGTGAGGAGGAGGCTCCTGTAAAGAAAACCACCCCCGTCTCAACCCCAAGCAAGGCCAAAGCCTCTCCTAAGACCCCAGCAGCAGCTGCTAAGATGGAGACTGACAGCTCAGATTCCTCTGACAGTGAGGATGAGGCTCCAGCCAGGCAGGCCCCTGCCAAGCCCACTCCCAGCCCGGCTAAAACCACACCCAAGGCCCCTGCTGCAGCTAAGAAGGCCGACAGCTCGGACAGTGATGAGTCTGACACTGAGGAGGGCAAGCCAGCTAAAAAGGTCACTGCTACCTCCGTAGCCAAACCTTCAACTCCAGTACAGGAGGAGGACAAAGATTCCTCAGACAGTGAGGATGAAGAAACACCATCGAAACCAGAATCCACACCATCTGAGAAATCTGTCACGCAAACCCAGGCAACGCCTCCTGCTGGCAAGGAGGGAGGTACAGAGGAACACATTCCAGCAGAGAAGGTTGAGGCTGTTCGAGTCATACCTACAACTGAAACAGCAGCTGAGGAAAACAGCGGTGATGATCCAACCGATACTGAAGGATCTCCTCCTGAAGTCCCTGAGGTGGACACACCCCCTGCCTCTGGGCCAGAGAGTGcaaaggaggaggaggtcccagAGAGTCCCCAGAAGGTCCTAAAGACGGACACTTCTTCAGAGAAGCCCAAGACAGAGGATCAGATAGTGACCTCTACAACATCAGAGGACAAGAGTGACACCCCTGAACTCCCATCAGAAGCCCCTGCTACGGCTGCTGAGATCAGAACTGCTTTAGAAGAGGAGTCAAAGGACTGTGTTGACCCAGTTATCACCAATTCAGCATCTGAAGACTCGGAGCCTGAAAAAGTGACCATTGAGACAGTTGTTGAGACAATccccacagagacagaggagccaAACACTGATACCCCAACACCTGGAtcaaagaggaagaggagtaaAGAGACAACGGACGCAACtcccaagaagaagaagatgaagaggaagaagaagggggAGGTTGAAGAGAATGGGCAGCCTGCAGTAGAGGAGGATGGGGATGAGTCCAGTCTGGACACAAAGGGGTTGGAGCTGACTCCATCAGACGATTCCAAGGTGGATACCATCCCGGCTTCAGAGTCTGACTCCACCACTCTTGTTCTGTCAGCAAAGTCACTCAAGAAAAGGAAAAGAAAGAGGGTGAAGAAAAGAAGAGGTGCGAAGGCCGAGAGGGAGTCACCGGAAGAGGACAAAAAAACAGACTTCgtcccaaaaaataaaaaaataaaaaagagcaAGAAAAACACAACATCCAACCTGACACCACCAACCAACAACCAGACCAAGGAAACTCCAAAGACCACAGCTGCTAAGAGGCCTCTTCCTCCCACCCCTGAGCCGGAGGAGCTAGAGACtcccaaaaagaagaagaagaagaaagtcGCAGAGAAAGGGAGCGCTGTGAAGGAAAATACAACTCCAGGCATTGAAACAAAGAAGAACAAGAAAGTTGCAGAGAAAAGGAGCGCTGTGAAGGAAAATACTCCAGGCATtgaaacaaagaagaagaaggcTGCTAAAGCTGAAAACACTGTGAAAGACTCTGCAATCTCAACTCCTGAACCGAGCCTTACACCAGAGACCCCAAAAAACAAAAAGAAGAAAAACAAGCTGACAGAGAAAAAGGAGAAAATGAAAACTGCATGGAAAACACCGGTAAAAGCCTCAACAGGACCTTTGCCTAACACAGAAGTCACTAAGAAAAATAAGTCCTCCAAAAAGAAATAATCCAATGGTGAAATTTCAGGAGATGGTGGATATCTTCTCCAGGGAATGAAATGGAGCTGCCAACGTCAATCAGAAGACCACCTCGATCACACTGGTGCCTGAGGTTTCAACCAAAAGAAGGGGAAACTGGAGTTCTGGCCTGTACATGTACTTTAGGTTCTACACATGTATTTTAGGGGAACATCTGTATTGTGTTACTAACAACACAATCTATGTTTTAACCATATATTCTATAAGCTTGCTAAACCAGGCATGTATTGACATGAAAAAGGCAAAATAATCATACCATTCTATTTGAAATGTTGAATAAACGGGACACAGAAACTAACACATTTGCACAGCCTGATGGAACGTAAACCCATCTTCAGTGTATTTGCCAAGTCCTAACCAATGGTAAAACAATCATTAGGTATTAATATGTCCTTGGTCTAGCATTGCTGTCTTGATAATGTTGTAGGGTGTAGTACTCTTGCATGTTGTGGGTTTTCATTTCTGTTCTTTAAGCTGTGAACACTTCCACATAATTGTGTGTAAGGTAAGGGATTGTTAGGACTCAAAATGGGGAACACTTGTAGCAAATGTCACTCCAAATACTGTACTATGCACCTCACGAATCCTATTGCTGAGCCCATAGCCTTGTGTTTTAGCACTTATGTTAGACCCATACACCTATGCAGAGGAAGGTTCTGGGGGACCAGAGGAGGATAGCTGATCTGACTGACTCAGAGAATTTGCTGAACTCCCATGTTTACAAACCAGTATTTGTGTCACATTCTTGTGAAAACAAACTTTTCTTCCATTTGTCATTTTCTGATTGTTCATTATCAATAAAAATGGTTTAATCTCTTAA

Function

NR:

description
treacle protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591551.2 False 4994 mRNA 0.49 26 35507047 35524067
XM_036968003.1 True 4925 mRNA 0.49 27 35507047 35524067

Neighbor

gene id symbol gene type direction distance location
ik ik coding downstream 1331 35495285 ~ 35505716 (-)
LOC110510173 LOC106563748 coding downstream 52522 35421966 ~ 35454525 (-)
LOC110510176 LOC106563749 coding downstream 85235 35399336 ~ 35421812 (-)
LOC118945291 NA coding downstream 138485 35349365 ~ 35368562 (-)
LOC110510172 dach2 coding downstream 217509 35003916 ~ 35289538 (-)
LOC110510228 LOC106563789 coding upstream 282396 35804621 ~ 35817492 (-)
LOC110510227 LOC106563788 coding upstream 317076 35841143 ~ 35871517 (-)
LOC110510226 NA coding upstream 363924 35887991 ~ 35892734 (-)
LOC118945701 NA coding upstream 365250 35889317 ~ 35889390 (-)
LOC118945702 NA coding upstream 365518 35889585 ~ 35889659 (-)
G2179135 NA non-coding downstream 169 35504350 ~ 35506878 (-)
G2179211 NA non-coding downstream 23166 35481055 ~ 35483881 (-)
G2179204 NA non-coding downstream 33682 35472628 ~ 35473365 (-)
G2179178 s226a non-coding downstream 38773 35403440 ~ 35468274 (-)
G2179169 NA non-coding downstream 117799 35388615 ~ 35389248 (-)
G2179228 NA non-coding upstream 16750 35540817 ~ 35542952 (-)
G2179286 LOC106602935 non-coding upstream 127982 35652049 ~ 35655274 (-)
G2179290 NA non-coding upstream 134331 35658398 ~ 35658614 (-)
G2179328 LOC106563737 non-coding upstream 170569 35694636 ~ 35792895 (-)
G2179340 NA non-coding upstream 183730 35707797 ~ 35708325 (-)
G2178372 NA other downstream 697744 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1165234 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1359728 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1994721 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2862475 32643402 ~ 32644572 (-)
G2179862 NA other upstream 437917 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 980406 36499597 ~ 36596534 (-)
G2180120 NA other upstream 982473 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1453087 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1457890 36981957 ~ 36982709 (-)

Expression


Co-expression Network