LOC110510227 (LOC106563788)


Basic Information

Item Value
gene id LOC110510227
gene name LOC106563788
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35841143 ~ 35871517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967330.1
TACACAACTTGTTGCTGCTTATGACTCATTCAGGGAAGTGCACGGGAGATAGGTGGCTGCTGTCACATTTCTCATCCATTTACTCCTGAACTTGAATGAACTTTCGCTCTGCCAGCGGTAACTGTTGCTGTCCTTCTGACCACATTTACAACGTGCCAGACTAGGCAGGGTTAGAGATGTGCAACATCTACATTGTCTGCAGGTGGTGAGGATTCTGTGACACCCAACAGGTTCCCTGCTATCGGCAAAATGATTCTCTTCAGGATTAGAAAAGTCCGTCGTGTCATCGTTCTACTCTGCATCACTACTATCGTTGTGTTTTATACCGGACAGCTGTCCTCCAATTCGCTTGTGGACTTTGTTAAAAATGCCCTTCGGCCTCTGGACAGGATCCTCTCTCCAAAATATTGCGCCTGTCTCAAATGTATGACACAGCCAGACGATGACCTCTGGTTTCAGAAGCGCTTCAACACATCTTTTCAACCCTTTCTGACCAGAAAGTACAAGACACTCTCCAACGATACAAGAATGTGGTGGCAgAAATTGCAGAAAGACCGTAACATAGCCAACTTTAGCGAGGTGGTGGAGAAGTTGTTCCAGGTCATCCCTGATGCTGATCTTTACATGGACGCGGGCCCTGAGCGTTGTAGGACCTGTGCTGTGGTGGGGAACTCTGGGAACCTCAAGGGCTCCCACTACGGAGCCCTCATCGACtccagtgatgtcatcataagAATGAACAAGGCTCGTACCTCTGGCTATGAGCGGGATGTTGGCAGCCGCACCACACATCACATCATATACCCAGAGAGTGCCATAGATCTGGACAACACCACTAGTCTCTTGTTTTTCCCTTTCAAGACTCTGGACCTTCAGTGGCTGCCCGGTGCCATTACCACTGGGTCTCACATCACCTTCTCATATTTACGTCTTAGACCGAAGATAAAGGCCAACAAAGATTTGgcattgagcatgttgctctaccaaggagaggaggaaacatTGAGATCCTACTACTACCAAGggaggtgtcatgacgttggactctttgggtatagcaagccccatccccctttcCCTGCCTCCCCcgttcctccttcaactaggctgctgtggtcagagagacgtcgtaaattcctgagaagacatGGCCACATAGTATAAGAGGCAGAGGAAATTTTCATGGagcacaaaggaatttcttccacctcacagaacttgaggtacgaacaaatttcatgttccggagaaagtataaaagatcggtgaagaatccggctacgaactggtccgtttgtcaca
>XM_036967329.1
ACTTAATATACACAACTTGTTGCTGCTTATGACTCATTCAGGGAAGTGCACGGGAGATAGGTGGCTGCTGTCACATTTCTCATCCATTTACTCCTGAACTTGAATGAACTTTCGCTCTGCCAGCGGTAACTGTTGCTGTCCTTCTGACCACATTTACAACGTGCCAGACTAGGCAGGGTTAGAGATGTGCAACATCTACATTGTCTGCAGGTGGTGAGGATTCTGTGACACCCAACAGGTTCCCTGCTATCGGCAAAATGATTCTCTTCAGGATTAGAAAAGTCCGTCGTGTCATCGTTCTACTCTGCATCACTACTATCGTTGTGTTTTATACCGGACAGCTGTCCTCCAATTCGCTTGTGGACTTTGTTAAAAATGCCCTTCGGCCTCTGGACAGGATCCTCTCTCCAAAATATTGCGCCTGTCTCAAATGTATGACACAGCCAGACGATGACCTCTGGTTTCAGAAGCGCTTCAACACATCTTTTCAACCCTTTCTGACCAGAAAGTACAAGACACTCTCCAACGATACAAGAATGTGGTGGCAgAAATTGCAGAAAGACCGTAACATAGCCAACTTTAGCGAGGTGGTGGAGAAGTTGTTCCAGGTCATCCCTGATGCTGATCTTTACATGGACGCGGGCCCTGAGCGTTGTAGGACCTGTGCTGTGGTGGGGAACTCTGGGAACCTCAAGGGCTCCCACTACGGAGCCCTCATCGACtccagtgatgtcatcataagAATGAACAAGGCTCGTACCTCTGGCTATGAGCGGGATGTTGGCAGCCGCACCACACATCACATCATATACCCAGAGAGTGCCATAGATCTGGACAACACCACTAGTCTCTTGTTTTTCCCTTTCAAGACTCTGGACCTTCAGTGGCTGCCCGGTGCCATTACCACTGGGTCTCACATCACCTTCTCATATTTACGTCTTAGACCGAAGATAAAGGCCAACAAAGATTTGGTGTTGGTTCTGAATCCTGTGTTCATGAAATATGTTCATGAAGTCTGGCTTGACTATTACGGCAAGTACCCCTCCACCGGATTCATGGCTTTGATATTAGCCCTACACATTTGTGACGAGgcattgagcatgttgctctaccaaggagaggaggaaacatTGAGATCCTACTACTACCAAGggaggtgtcatgacgttggactctttgggtatagcaagccccatccccctttcCCTGCCTCCCCcgttcctccttcaactaggctgctgtggtcagagagacgtcgtaaattcctgagaagacatGGCCACATAGTATAAGAGGCAGAGGAAATTTTCATGGagcacaaaggaatttcttccacctcacagaacttgaggtacgaacaaatttcatgttccggagaaagtataaaagatcggtgaagaatccggctacgaactggtccgtttgtcaca
>XM_021591615.2
AATATACACAACTTGTTGCTGCTTATGACTCATTCAGGGAAGTGCACGGGAGATAGGTGGCTGCTGTCACATTTCTCATCCATTTACTCCTGAACTTGAATGAACTTTCGCTCTGCCAGCGGTAACTGTTGCTGTCCTTCTGACCACATTTACAACGTGCCAGACTAGGCAGGGTTAGAGATGTGCAACATCTACATTGTCTGCAGGTGGTGAGGATTCTGTGACACCCAACAGGTTCCCTGCTATCGGCAAAATGATTCTCTTCAGGATTAGAAAAGTCCGTCGTGTCATCGTTCTACTCTGCATCACTACTATCGTTGTGTTTTATACCGGACAGCTGTCCTCCAATTCGCTTGTGGACTTTGTTAAAAATGCCCTTCGGCCTCTGGACAGGATCCTCTCTCCAAAATATTGCGCCTGTCTCAAATGTATGACACAGCCAGACGATGACCTCTGGTTTCAGAAGCGCTTCAACACATCTTTTCAACCCTTTCTGACCAGAAAGTACAAGACACTCTCCAACGATACAAGAATGTGGTGGCAgAAATTGCAGAAAGACCGTAACATAGCCAACTTTAGCGAGGTGGTGGAGAAGTTGTTCCAGGTCATCCCTGATGCTGATCTTTACATGGACGCGGGCCCTGAGCGTTGTAGGACCTGTGCTGTGGTGGGGAACTCTGGGAACCTCAAGGGCTCCCACTACGGAGCCCTCATCGACtccagtgatgtcatcataagAATGAACAAGGCTCGTACCTCTGGCTATGAGCGGGATGTTGGCAGCCGCACCACACATCACATCATATACCCAGAGAGTGCCATAGATCTGGACAACACCACTAGTCTCTTGTTTTTCCCTTTCAAGACTCTGGACCTTCAGTGGCTGCCCGGTGCCATTACCACTGGGTCTCACATCACCTTCTCATATTTACGTCTTAGACCGAAGATAAAGGCCAACAAAGATTTGGTGTTGGTTCTGAATCCTGTGTTCATGAAATATGTTCATGAAGTCTGGCTTGACTATTACGGCAAGTACCCCTCCACCGGATTCATGGCTTTGATATTAGCCCTACACATTTGTGACGAGGTGAATGTGTATGGATTTGGGAAAGACAGAAATGGGAACTGGCACCACTACTGGGAAACACTAACCAATAAAAAGCTCAAGACTGGACCACACCCTGGAGACTATGAGTACAATGTCACAAGAAAGCTCTCGGAAATACATAAACTTGAGATATATAAGGGATGGTGATAATCATTAATCCAGATCATTAACGGGATTTGCTTCAATAGtcccatttttttttatattgaacAATTTATTTCTGACTGTTTAGTCTGTCGAGGACTACATTACATCTTAGAAACACCATTCAAACTTTAAAAAAAGTTTGGTCTTGATAAACATGCTTTTGATAACATTTATACTTTTTAAACTTTTTGACCTTCTAAAAAAATGAATCTACTTTTAAAAACAAATCTACTTTTCAAATTTCCAAAGCTACCATTGTTAAAAACTCCCATGACTTCTAACATTCTAATCACAATAATGTAACACAAATCAGCTAAGTTGAGAGCTTTACCAACAAGTAAGATAAAAACTTAggctacttctctgctattcaaatcTGGAATCAGATTTGAAATATCTTCCACCAATCATACTATACAGCTCTTTTAAGCCCGGGTTCAGAAACAACAGCCAACATAAGGAAAGACGAGAAGAGACGAAACTAGCCAGTTGTAGAATTTTGTGTTGTGGGTACAAAATTGTTTTGTTACAGACTAATGCTATGTAAATGCTTGAGTTGAATACTACTAGTCACTGGTCATTTTCCACACCTGTCCAGTAACCTCTTTACGTACCACACAGAAGAGTGATTTATTAATTGCTCATTATCTTTCGGGCACTAAAGCCTAGCCGTGTGGAAACATAGTTCCCTCTGGTTAGGCTTTAAAGATCCCATGTCTCCTCTATTTTAGACATACGGTGTATTCAGaaatgattcagaccccttgactttttccacattttgttacgttacagtcttattctaaaatggattcaatagtttttccccctcaccaatctacacacaata

Function

NR:

description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG:

id description
K00786 GALT29A; beta-1,6-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967330.1 False 1302 mRNA 0.48 6 35841143 35871509
XM_036967329.1 False 1430 mRNA 0.48 7 35841143 35871517
XM_021591615.2 True 2105 mRNA 0.42 7 35855446 35871513

Neighbor

gene id symbol gene type direction distance location
LOC110510228 LOC106563789 coding downstream 23651 35804621 ~ 35817492 (-)
LOC110510180 tcof coding downstream 317076 35507047 ~ 35524067 (-)
ik ik coding downstream 335427 35495285 ~ 35505716 (-)
LOC110510173 LOC106563748 coding downstream 386618 35421966 ~ 35454525 (-)
LOC110510176 LOC106563749 coding downstream 419331 35399336 ~ 35421812 (-)
LOC110510226 NA coding upstream 16474 35887991 ~ 35892734 (-)
LOC118945701 NA coding upstream 17800 35889317 ~ 35889390 (-)
LOC118945702 NA coding upstream 18068 35889585 ~ 35889659 (-)
LOC118945707 NA coding upstream 18330 35889847 ~ 35889921 (-)
LOC118945704 NA coding upstream 18582 35890099 ~ 35890173 (-)
G2179806 NA non-coding downstream 1290 35838398 ~ 35839853 (-)
G2179379 NA non-coding downstream 37549 35803344 ~ 35803594 (-)
G2179376 NA non-coding downstream 39574 35801334 ~ 35801569 (-)
G2179330 NA non-coding downstream 59125 35778751 ~ 35782018 (-)
G2179803 NA non-coding upstream 2704 35874221 ~ 35905514 (-)
G2179798 NA non-coding upstream 17465 35888982 ~ 35892698 (-)
G2179847 NA non-coding upstream 25708 35897225 ~ 35897989 (-)
G2179850 NA non-coding upstream 42193 35913710 ~ 35914311 (-)
G2179856 NA non-coding upstream 81887 35953404 ~ 35955677 (-)
G2178372 NA other downstream 1031840 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1499330 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1693824 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2328817 33511296 ~ 33512326 (-)
G2176363 NA other downstream 3196571 32643402 ~ 32644572 (-)
G2179862 NA other upstream 90467 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 632956 36499597 ~ 36596534 (-)
G2180120 NA other upstream 635023 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1105637 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1110440 36981957 ~ 36982709 (-)

Expression


Co-expression Network