LOC110510226


Basic Information

Item Value
gene id LOC110510226
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35887991 ~ 35892734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471540.2
CCTGACTGGCAacgtttattctctctctctcgcgcgttCTTCACTCCGTTGAGTCCTGTGGATGATTTGCTGAAGCAGAACGTCCTCTGCATTATGGAAGATGATATGTTAGAAATGCTTCTTTAGTATCTACTTATTGGTATAGTGATGTACCTTAAGTCTTGCCCTGGTTATTAGTTAAGTAGTTAACAGTAGCTACTTTGGAGCATGGGGACTTGCAGAACCATGCACGTGGGCAACTCAACGTTTTAAAACCATGCCGTGCTGTCTGTATCTGGCCTATGGACTGAACTGAGGCCGTACTCGCCAATGACTGCGCACATGGCAGgcGCTGCCCGGGTGACTTGATTGCAAGGAGACTTAACCTCGAAAGGTGTGGAACTGAATCAATGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGCAACAGAGCTGTGGATGGTGTGGAGGCATCTGAAAAGATTTGGGAGACTACTCCCTCGTGGCCTGTGGCTGAACCATACACATGAAGCCATACACACGGCAGGAGACTCCACCCCAAAGTACTTAATGGTGGAGACATCACCTCAAAAGGTGTGAAGCTGCCCCAATGAGTTGATGGCATGGAGACTTCATCTGCCAAGGTGTGGAACTGACACAAGGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGGAACTGAACCAACGCTGTGAAAGGTAGGCTGCCTTTGCATAATATCCCTGCAGTCTCAGAACTGGATATGTTGACTGGGGTGTTCCTCATCTGATGCCCCTTGCTGATTTTCAGCCCCAACCTACCCTTCAGGTGCACAGTCACCCGATCACAATTTTGAAGTGCCTTTCCTATCGTCTTGAGTTTTGTTCAGTGGTGATATTTAGTTCTGAACTTAGAAGTGGTGTTTATGGGCCCTCACTTTGAGTGGGATATTTATAAAATGTGTAAATGTGACACTTCACCTATTTTAAGATGTAAAAAAGTATAACTGTATATGCTGAATAATTAAAGTTTTTAATGTTAGCTTTATGTATGAACCCTTTCGTTGTGGAAGCCTGTAAGTTCAGGAGTAATACATTTGCCTAGTAATTCAGATGTTGCATGAGTTTGTGCCATAATAGCTTTTAATGTTTTTGCATGACTACCTCACTTTTCTGTaagtaaggtccctcagtcaagttcAAACAGACATGGAGGCTAAGGCCACCTGTTGGTGGATGGGTTAAAACAGCTGTTAAATATCCCTTTAAGGATATTTCATTTAGCTTTGGATGTTGACTCAAACCTATTCAATACAAAGGTACAGGTGTCCTAACACAGTTGCTGCTGCAGGAGTGAACCACTTGGATTTCAGAAGCAAATTTTGATTGAATGTGATAGAACAGACTGGATCTGCGTTCTCGTTAAGCCTGTTGGCTACGAGCTTGAAATATACTTACTCGTCTAACTAATTTGTCTGTTGGTCAATGAAGTGGTGGCTGAGGATTTGGCCCCTGGAAAGTTAGCATGTAAAGTTAATATTTCTGTCAGGCCAGCTGCAGCACTTGGGAGGTGCAAGGAATGAGGTCGAGTCAACATCAATTGAGACGGAATCTTGGGGGACCAGAGGCCTGCCCACAAGGGACTtgaatcacattttattttgtcAAATGCTTAGTGATATTACATAATGCTTACATACCTTAACCAGCAAGCAGGTAATGTGTAGGGGTGAGGTGACTGCATAAATAAACGGGGCAGAGAAGTGGCGTTATGGGATCGACGCAAATAggcagctttaaaaaaaataaaaaaaaacctttaggcaagtcagttaagaacaaattcttattttcaatgactgcctaggaagtGGGTTATATGTAGAAACAATATTTATAGACGCActtcacatgtacagtgccttcaggatgTAGTCAAACACATTGGCATTCAACATTTGGTTGTTATAGCCTGAtgtcaaaatggattaaatggctcacatttcattttcaataaatgtataaaatgtt
>XR_005040355.1
TACCTGACTGGCAacgtttattctctctctctcgcgcgttCTTCACTCCGTTGAGTCCTGTGGATGATTTGCTGAAGCAGAACGTCCTCTGCATTATGGAAGATGATATGTTAGAAATGCTTCTTTAGTATCTACTTATTGGTATAGTGATGTACCTTAAGTCTTGCCCTGGTTATTAGTTAAGTAGTTAACAGTAGCTACTTTGGAGCATGGGGACTTGCAGAACCATGCACGTGGGCAACTCAACGTTTTAAAACCATGCCGTGCTGTCTGTATCTGGCCTATGGACTGAACTGAGGCCGTACTCGCCAATGACTGCGCACATGGCAGgcGCTGCCCGGGTGACTTGATTGCAAGGAGACTTAACCTCGAAAGTGGTTTTGAACAGGTGTGGAACTGAATCAATGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGCAACAGAGCTGTGGATGGTGTGGAGGCATCTGAAAAGATTTGGGAGACTACTCCCTCGTGGCCTGTGGCTGAACCATACACATGAAGCCATACACACGGCAGGAGACTCCACCCCAAAGTACTTAATGGTGGAGACATCACCTCAAAAGGTGTGAAGCTGCCCCAATGAGTTGATGGCATGGAGACTTCATCTGCCAAGGTGTGGAACTGACACAAGGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGGAACTGAACCAACGCTGTGAAAGGTAGGCTGCCTTTGCATAATATCCCTGCAGTCTCAGAACTGGATATGTTGACTGGGGTGTTCCTCATCTGATGCCCCTTGCTGATTTTCAGCCCCAACCTACCCTTCAGGTGCACAGTCACCCGATCACAATTTTGAAGTGCCTTTCCTATCGTCTTGAGTTTTGTTCAGTGGTGATATTTAGTTCTGAACTTAGAAGTGGTGTTTATGGGCCCTCACTTTGAGTGGGATATTTATAAAATGTGTAAATGTGACACTTCACCTATTTTAAGATGTAAAAAAGTATAACTGTATATGCTGAATAATTAAAGTTTTTAATGTTAGCTTTATGTATGAACCCTTTCGTTGTGGAAGCCTGTAAGTTCAGGAGTAATACATTTGCCTAGTAATTCAGATGTTGCATGAGTTTGTGCCATAATAGCTTTTAATGTTTTTGCATGACTACCTCACTTTTCTGTaagtaaggtccctcagtcaagttcAAACAGACATGGAGGCTAAGGCCACCTGTTGGTGGATGGGTTAAAACAGCTGTTAAATATCCCTTTAAGGATATTTCATTTAGCTTTGGATGTTGACTCAAACCTATTCAATACAAAGGTACAGGTGTCCTAACACAGTTGCTGCTGCAGGAGTGAACCACTTGGATTTCAGAAGCAAATTTTGATTGAATGTGATAGAACAGACTGGATCTGCGTTCTCGTTAAGCCTGTTGGCTACGAGCTTGAAATATACTTACTCGTCTAACTAATTTGTCTGTTGGTCAATGAAGTGGTGGCTGAGGATTTGGCCCCTGGAAAGTTAGCATGTAAAGTTAATATTTCTGTCAGGCCAGCTGCAGCACTTGGGAGGTGCAAGGAATGAGGTCGAGTCAACATCAATTGAGACGGAATCTTGGGGGACCAGAGGCCTGCCCACAAGGGACTtgaatcacattttattttgtcAAATGCTTAGTGATATTACATAATGCTTACATACCTTAACCAGCAAGCAGGTAATGTGTAGGGGTGAGGTGACTGCATAAATAAACGGGGCAGAGAAGTGGCGTTATGGGATCGACGCAAATAggcagctttaaaaaaaataaaaaaaaacctttaggcaagtcagttaagaacaaattcttattttcaatgactgcctaggaagtGGGTTATATGTAGAAACAATATTTATAGACGCActtcacatgtacagtgccttcaggatgTAGTCAAACACATTGGCATTCAACATTTGGTTGTTATAGCCTGAtgtcaaaatggattaaatggctcacatttcattttcaataaatgtataaaatgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471540.2 False 2018 mRNA 0.43 12 35887991 35892732
XR_005040355.1 True 2033 mRNA 0.42 12 35887991 35892734

Neighbor

gene id symbol gene type direction distance location
LOC110510227 LOC106563788 coding downstream 16474 35841143 ~ 35871517 (-)
LOC110510228 LOC106563789 coding downstream 70499 35804621 ~ 35817492 (-)
LOC110510180 tcof coding downstream 363924 35507047 ~ 35524067 (-)
ik ik coding downstream 382275 35495285 ~ 35505716 (-)
LOC110510173 LOC106563748 coding downstream 433466 35421966 ~ 35454525 (-)
supt6h LOC106602907 coding upstream 18294 35911028 ~ 35950373 (-)
LOC118945335 NA coding upstream 42626 35935360 ~ 35936556 (-)
LOC118945336 NA coding upstream 44010 35936744 ~ 35937921 (-)
LOC110509452 LOC106563653 coding upstream 76722 35969456 ~ 36032625 (-)
nf2b LOC106563816 coding upstream 232281 36125015 ~ 36147223 (-)
G2179829 NA non-coding downstream 27587 35860000 ~ 35860404 (-)
G2179806 NA non-coding downstream 48138 35838398 ~ 35839853 (-)
G2179379 NA non-coding downstream 84397 35803344 ~ 35803594 (-)
G2179376 NA non-coding downstream 86422 35801334 ~ 35801569 (-)
G2179847 NA non-coding upstream 4491 35897225 ~ 35897989 (-)
G2179850 NA non-coding upstream 20976 35913710 ~ 35914311 (-)
G2179856 NA non-coding upstream 60670 35953404 ~ 35955677 (-)
G2179861 NA non-coding upstream 68470 35961204 ~ 35962276 (-)
G2179902 NA non-coding upstream 146669 36039403 ~ 36096507 (-)
G2178372 NA other downstream 1078688 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1546178 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1740672 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2375665 33511296 ~ 33512326 (-)
G2176363 NA other downstream 3243419 32643402 ~ 32644572 (-)
G2179862 NA other upstream 69250 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 611739 36499597 ~ 36596534 (-)
G2180120 NA other upstream 613806 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1084420 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1089223 36981957 ~ 36982709 (-)

Expression


Co-expression Network