supt6h (LOC106602907)


Basic Information

Item Value
gene id supt6h
gene name LOC106602907
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35911028 ~ 35950373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968144.1
CTCCACGAGAACAAACCACTTCACACGGAGTCGGAAGTTTCCTCACCACCGGAATTCAACACGCCGCTATTCATCAGCCATTTTTATTAGTACAAGCTTGCGCGAAGATATAGCATAGCGACATATCCCTCTACATTTCAAGGATTTAGGTCAAGTATCGTCGCAGGGAGAAGCCTTGCAGACATGTCTGACTTCATCGATAGCGAGGCTGAGGAGTCGGAGGAGGAGTTTGAAGAGAAAGACCTGAAGCCTAAAAAGACCCAGGCGTTTATGGATGATGaggaagaggaggaagagttaaACACAGAGGACCAGGATGAGCACGGGAACCTGATGGGGCTCATCGACGATGATGTggatgaagatgaggaagaggaagagaagaaaagCGGAGGAGCAGGCAGCGGCAGCGACTCAGAGGATGAAGTCAGACACAGACGCAAGAAACGCAACTATGACGACTATCTGGATGATGATGACCTGGACCTCATTGAGGAGAACTTGGGAGTCAAAGTCAAGAGGAGGAAGAAGAAGTATGACCGTGTGAAGACTatggatgatgatgaagatgacgaGAAGGACCAGATCGCAGACGAGATCTTCCACAGAGGAGATGACGAGGACGGAGAGGGGGagctggaggagggagagacagtcgACCCGCCCCTACGTCGCCATGGTGAACGCCTCgacgaggaagaggaagaggagggagaggaggagtcaGATATTGATGACTTTATCGTGGACGACGATGGCCAGCCTATCACCAAGAGGAGAAGCAAGAAGTTCTCAGGATACACAGATGCAGCCCTCCAGGAAGCTCAGGAGATCTTCGGGGGCGACTTTGACTTTGCGGAGTTCGACGCCGACGGTGCTTATGAAcagggtgaggaagaggaggaggaccaggatgAAGAGGGCTGGGACCGGCCCAAGAAGCCAACGaagaggagggtggggaggaaGAGCATCTTCGAGCTCTACGAGCCCAGCGAGCTGGAGAGTAGTCACATGACTGACCAGGACAACGAGATCCGCTCCACAGACATGCCAGAGAGGTTCCAGCTGCGCTCCATCCCAGTGAAGCCTGCTGAGGATGATGAGTTGGAGGAAGAGGCAGAGTGGATCTACAGAAACGCTTTCTCAACCCCCACCATCTCCATGCAGgAGAGTACAGATTACCTGGACAGAGGAGCCACCACTAACTTTAGCAGGAAGGGCCCCAGCACCATCGCCAAGATTAAGGAGGCCCTCAACTTCATGAGGAATCAGCATTTTGAGgtTCCATTCATCGCCTTCTACAGGAAGGAGTACGTAGAACCGGAGCTCAACATCAACGACCTGTGGAAGGTCTGGCAGTGGGACGAGAAGTGGTGCCAGCTGAAGAGCAGGAAGCAGAACCTGACACGTCTGTTCCGGAggatgcaggggtaccagtatgAGCAGATATCTGCCGACCCCGACAAGCCCCTGGCTGACGGCATCAGGCCCCTGGACACTGCTGATATGGAGAGACTGAAAGATGTCCAGTCCATAGATGAGCTGAGTGACGTGTATAGTCACTTCCTTCTGTACTATGGCCGAGACATCCCCAAGATGCAGAACGCAGCCAAAGCTGCcagcaagaagaagaagaagaagaagaagattgaGGTCAACGAGGAAGgtgaggaggaagaggtggaggaagaggaggaggtggaggaagagaaggggcCGGACCTGAAGCTGGCATCTCGTAGAGACATGTACAGCATCTGTCAGAGCGCTGGGCTCGatggcctGGCTAAGAAATTTGGGCTGACTCCAGAGCAGTTTGGAGAGAATCTGAGAGACAGCTACCAGCGTCACGAGACAGAGCAGTTCCCTGCCGAGCCTGTGGAGTTGGCTAAAGACTACGTCTGCagcCAGTTTAACAGCCctgaggtggtgttggaggggacTCGTTATATGGTTGCGATGCAGATTGCCAGGGAGCCTCTGGTCAGACACGTCCTCAGACAGACGTTCCAGGAGAGAGCCAAGATCAACATCAAGCCCACCAAGAAGGGAAAGAAGGACATGGACGAGGCCCACTTTGGCTACTCCTTCAAGTACCTGAAGAACAAGCCAGTGAAGGAACTGAACGGAGACCAGTTCTTAAAGATGTGccaggctgaggaggaggggcTTCTCACCATAGACATCTGCATCGATCTCCTAGGGGTCAAAGGGGTTGCAGGTGACCAGACATACTTTGATGAGATCAAGCAGTTTTACTACAGAGATGAGTTCAGTCACCAGGTGCAGGAGTGGAACAGACAGAGGACCCTGGCCATCGAACGCTCCCTCACACAGTTCCTGTACCCTCAGATGGCCAAGGAACTCAAGAACAAACTCATCGCGGAGGCCAAGGAAAACATCATCAAGTCATGTTGCAGGAGGCTGTATAATTGGCTGAAGGTGGCTCcttacagaccagaccagcaggcggaggaggaggatgatgatctGATGGATGAGAGTCAAGGAAAAGGCATCAGAGTCCTGGGAGTGGCCTTCGCagacagcagAGACACGCCAGTGTTCTGTTCACTGATCAACGGAGAGGGAGAGGTCGTGGACTTCCTCCGTCTGCCCTACTTCCTGAAGAGGAGGAACGCATGGAAGGAGGACGAGAGAGACAAaaagCTCCAGGACATTGAGAACCTGAAGAAGTTCCTGACCAGTAAGAAGCCTCACGTGGTGGCTGTTGCCGGGGAGAATAGggacgCCCACATGATAATGGAGGACATTAAGAGGACAGTGAGTGAGTTGGAGCAGGAGTCTTCTCTGCCTGCTGTGGGAGTGGAGCTGGTAGACAACGAACTGGCCATGCTCTATATGAACAGTACCAAATCTCagACTGAATTCCGTGACTACCCTCCCCTGCTGCGCCAGGCTGTGTCAGTAGCCAGGAAGATTCAGGATCCTCTAGTGGAGTACGCTCAGGTCTGCAGCTCAGACGAAGACATCCTCTGCCTCAAACTACACCCTCTacaggaGCATGTAGTTAAGGAGGACCTGCTGAGTGCTCTGTACTGTGAGTTTATAAACCGGGTCAACGAGGTGGGGGTGGATGTGAACAGAGCCATCTCTCACccctacacacagagcctggttCAGTTCGTCTGTGGCCTCGGACTCAGGAAGGGATCCCACCTGCTCAAGATCCTGAAGCAGAACAACACTCGTCTGGAGAACAGGACTCAGCTGGTCACTATGTGTCACATGGGCCCCAAGGTCTTCATCAACTGTGCCGGCTTCATCAAGATAGACACCGCCTCTCTCGGAGACAGtactgACTCATACATCGAGGTTCTGGATGGGTCCCGGGTGCACCCGGAGACATATGAGTGGGCCAGAAAGATGGCGGTGGACGCTCTGGAATACGACGAGTCAGCGGAGGACGCCAACCCGGCCGGAGCGCTGGAGGAAATCCTGGAAAACCCGGAGCGCCTCAAAGATCTGGACCTGGATGCTTTTGCTGAGGAACTGGAGAGACAGGGTTATGGTAACAAGGGCATCACCCTGTATGATATCCGTGCTGAGTTGAGCTGCAGGTATAAGGACTTGAGAGTTCCCTACAGAGCTCCTAACACCGAGGAGGTGTTTAACCTGCTTACCAAGGAGACACCAGAGACCTTCTATATAGGTAAGCTGATCACCAGTGTTGTGACCGGTATAGCTCACCGGCGCCCCCAGGGGGAGAGTTATGACCAGGCCATTAGGAACGACGCTACAGGGCTGTGGCAGTGCCCCTTCTGTCAACAGGACAACTTCCCTGAACTCAGCGAGgtGTGGAACCATTTTGACAGTGGTTCGTGTCCTGGCCAGGCTATAGGTGTGAGGGCTCGGATGGACAACGGTGTCCAGGGCTTCATCCCCACCAAGTTCCTCAGTGACAAGGTGGTCAAACACCCTGAGGAGAGGGTGAAGGTGGGTATGACGGTACACTGTCGCATCATGAAGATTGACATTGAGAAGTTCAACGTGGACCTGACATGTCGTACGTCTGACCTGATGGATAAAAACAACGAGTGGAAGCTCCCTAAAGACAGTTACTACGACTTCGACACGGAGACAGAGGACACCAAGACAGAGGAGGAACGCAAGAAGAAACAGCAGAGAACCAccTATATAAAACGTGTGATTGCCCACCCATCCTTCCACAACATCAACTTCAAGCAGGCTGAGAAGATGATGGAGTCCATGGACCAGGGAGATGTTGTTATCAGGCCCAGCAGCAAGGGAGAGAACCACCTTACTGTCACCTGGAAGGTAGCTGACGGCATCTACCAGCatgttgatgtgagagaggagggCAAGGAGAACGCCTTCAGCCTGGGACACACACTCTGGATCAACACTGAGgagTTTGAGGATCTTGATGAGATCACAGCTCGTTATATTCAGCCAATGGCAGCGTTCGCTCGTGACCTGCTGGGACACAAGTACTTCCAGGACTGTAACGGAGGGGACAGGAAGaAAATGGAGGAGTTGTTGATCAGGTCTAAGAAGGAGAAGCCTACGTTCATACCCTACTTTGTCTCAGCCTGTAAAGACCTGCCAGGGAAGTTCATACTGGGATACCAGCCTCGTGGCAAACCACGtgttgaGTATGTGACCATCTCTCCTGACGGCTTCCGGTACCGCTCCCAGATGTTCCCCACCGTTAACGGACTGTTCCGCTGGTTCAAAGACCACTTCCAGGAACCGGTACCAGGCATCACCCCCAGCAGTAGCAGTCGAACACGGACACCTGCCTCTGTCAACGCTACACCAGCTAACATCAACATCGCagACCTGACGCGAGCGGTCAGCGCTCTCCCACGCAACATGACCTCTCAGATGTTCAGTGCCATCGCCGCGGTGACGGGGCAGGGGCAGGGCCAGAACGCTAACACTACGCCTGCCCAGTGGAACTCCAGCCAATACGGTTACACCGGGGGCAGCAGTGGGGGTGGGGGAGGCAGCTCCTCAGCCTATCACgtgtttGCGACGCCCCAACAGCCGATGGCGACACCCATGATGACCCCCAGCTACTCATACACCACCCCCAGCCAGCAGACCATGGGTACCCCGCAgtacccctccaccccccagtCCTCCCACTcccatggacacacacagagcaaCCAGGGCCACAGCAGCCACCAGGGACCCTCGTCCAACACTCCCTCGTCCTCCTCCAGAGGACGCACTCCGCAGCAGCAGCCTAAGTCGAGCGGCAGCACGGCGGTGGACTGGGGCAAGGTAGCGGAGCAGTGGCTCCAGGAGAAGGAGGCGGAGAGGAAGAAGCAGAAGACCCCCAGGATGACCCCGCGACCTTCCCCCAGCCCCATGATCCAGAGCACGCCTATGTCAATCGCTGGAGACGCCACGCCCCTTCTGGACGAGATGGACCGATAGGAGAGGCCGGGGGGGGCGACTAtacccccctcctccccaaaTATACCCCCCCTTACTCTCATCAActcatccttccatccatccgCCTACCTGCATGCCCCCTCAGACCAGTCACATACCATTCAGATcgccctctcctcccagcctacTAAACTATCcctgctcccctcttctccctctcctcccagcctacTAAACTAACcctgctcccctcttctccctctcctcccagcctacTAAACTAACCctgctccccctcttctccctctcctcccagcct

Function

NR:

description
PREDICTED: transcription elongation factor SPT6

GO: NA

KEGG:

id description
K11292 SUPT6H, SPT6; transcription elongation factor SPT6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968144.1 True 5713 mRNA 0.55 38 35911028 35950373

Neighbor

gene id symbol gene type direction distance location
LOC110510226 NA coding downstream 18294 35887991 ~ 35892734 (-)
LOC118945690 NA coding downstream 18644 35892318 ~ 35892384 (-)
LOC118945706 NA coding downstream 19312 35891642 ~ 35891716 (-)
LOC118945703 NA coding downstream 19582 35891372 ~ 35891446 (-)
LOC118945692 NA coding downstream 19917 35891022 ~ 35891111 (-)
LOC110509452 LOC106563653 coding upstream 19083 35969456 ~ 36032625 (-)
nf2b LOC106563816 coding upstream 174642 36125015 ~ 36147223 (-)
LOC110510222 LOC106563811 coding upstream 212776 36163149 ~ 36165830 (-)
LOC110510224 LOC106563813 coding upstream 241730 36192103 ~ 36194036 (-)
LOC110510219 LOC106563810 coding upstream 245036 36195409 ~ 36196374 (-)
G2179803 NA non-coding downstream 5514 35874221 ~ 35905514 (-)
G2179847 NA non-coding downstream 13039 35897225 ~ 35897989 (-)
G2179798 NA non-coding downstream 18330 35888982 ~ 35892698 (-)
G2179829 NA non-coding downstream 50624 35860000 ~ 35860404 (-)
G2179806 NA non-coding downstream 71175 35838398 ~ 35839853 (-)
G2179856 NA non-coding upstream 3031 35953404 ~ 35955677 (-)
G2179861 NA non-coding upstream 10831 35961204 ~ 35962276 (-)
G2179902 NA non-coding upstream 89030 36039403 ~ 36096507 (-)
G2179924 NA non-coding upstream 130011 36080384 ~ 36080677 (-)
G2179961 NA non-coding upstream 205842 36156215 ~ 36158086 (-)
G2178372 NA other downstream 1101725 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1569215 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1763709 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2398702 33511296 ~ 33512326 (-)
G2176363 NA other downstream 3266456 32643402 ~ 32644572 (-)
G2179862 NA other upstream 11611 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 554100 36499597 ~ 36596534 (-)
G2180120 NA other upstream 556167 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1026781 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1031584 36981957 ~ 36982709 (-)

Expression


Co-expression Network