LOC110509452 (LOC106563653)


Basic Information

Item Value
gene id LOC110509452
gene name LOC106563653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35969456 ~ 36032625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968055.1
GGCAGGATGGCGCAAGTCATGGTAACAAAGAAAAATGCGAGGAGATTATTTTCGCGGGCTGCTCTCTCCATCGGACAGTCGGTGTGTTTAGTTGCTTGGACCGTAGTACAGTAGTAGCCAAGTGTAGTGTAGGACAAAGACACAGACACTGATTGTCCTTGTAAGAATATTAGGGTTCTTTGTGCTTCTTTCAAATCACACTGTCAGAAGACCAAGGGCACTCATACACGCTCCTGCTTAAATCCTGCTTTGTGTAACGGAGACGGTAACAGACCTTTTCCCGCCCGGTGGCACACATCAGGCTGGTGATGATGGGACCGGAGAGATTCGGGCTCGTGGAGTTACCGCTGCGCCCGGTAGACGTCGCCGGTTCACCTCCCCTGGAGTTGGCGGGAGAGGATCCGCGCGCAACGGATGACCATCACGGGATTGAGAGCCTGGCTCTAGCCTCGGTTGAGGTGCCGGTGAATGTAAACTGCAGTCCGTGGGGAGAGAAGATGCCGTTCCACCACGTCaggtctactctgctctacacTGGAAGTCTCCTGAGCCGGACACTGTCTGAAGGGAGCGAAACCTTCCAACTCACcagcatctccacagaggagctaggagAGATCCGGGAGGCGTTCCGGGTGCTGGACCGGGATGGGAACGGGTTCATCTCTAAGCAGGAGCTGGGCATGGCTATGAGATCCCTGGGGTACATGCCCAGTGAGGTGGAGCTGGCCATCATCATGCAGAGACTAGACATGGATGgtgatGGTCAGGTTGACTTTGAGGAGTTTGTGACGATATTGGGACCCAAACTGCTGTCGTCTGAGACCAGAGAAGGTTTCCTTGGAAGCACCATCGATAACATCTTCTGGCAGTTTGACATACAGCAGATGTCCCTGGACGAGCTGAAGCAGGTTCTGTTTCACGCATTCCGAGACCACCTGACGATGAAGGACATCGAGAACATCATCATCAACGAAGAGGAGAGCCTCAACGAGACAGGGAACTGCCCCGAGTacgagggagTCCATCCTAAGAAGAAGAACAGACAGACATGCGTGAGGAAGAGCCTGATCTGCGCCTTTGCCATGGCCTTCATCATCAGCGTCATGCTCATCGCGGCCAATCAGATGCTGCGGAACGGCATGGAGTAAGCCAATCACACTGTGAGCCTGGGGAGTGGGCCTTACAGTTAAATgacctcacttcctctctctgcagcaaAAACAGGAAGACAGACCAGCCAGAACCCAAACACCTCTGTGAAGGACAACTATCTGTTATTTTAATGACGTTTGTTTTGATTTATATCATGAACAGTAAACAGACAAGAGAGTGCAAGTACTGAAGGACACACACGGAAAATGTCATTTTCAGTGGAAAaaaagacaaatcaaatcaaaaacacTAAGAGGACTTGATGAACAGACTGGACATGATACAAAGCAATCTTTTATATTTTGTGGGCATAAAGGGATTCCTTTCATTTCTGTATCAGAGAAGGCCACCCCTTTTAGAATGATTTTCTAACCACCcctttaaaataaatgttttgtttttttacctccTATTTAAAAGATCAATTGTCTAATCAAAAGCAATCTATTGAACATGCATCAGGTGCTTTGAGCCATTCCTAATTTTTAACTGAACTTTTGGTTCTGGGTTTACTTCAGGGGGGAAACATTACCTGACAAGCGCTCCTGCTGTTTAATGTTTTAAACTGTATCTAAACGTGTTAAtctgttattttttattattattctacTATCTTATATATTTACATGTTATAGTCACTCACCTGTGGACATTATACCAATGTATGTTTACACTGTAACAGAGATGGTTCGTGACTTGAGGACAAACTCGTGTTAGCTCCCAGAACAAAcccctaggctttagctcagctgACTTCCATAGTCTTAAATCACATAGGCATCATTCTACACCTGACATTCCCTCCCTCACAATGTTGCTACAGTATAGTCGactgtgtctgtctctatgtctgtctgtatgcacTGCATGTGACTCAGTGGATATTTAAAGGCACTGTAGGTTTGTACAGTATTTACCGTATGTTGTGTCACTCTACGTGTCCATAGGGCGGTGTTCTGTGTCAACTGTCCCTAAAGGCTTGGAACATGAACCACCTGGCCTTCTTGGTCCATGAATAATAAGGTTGTGGTCATGTAAAATTGCTTTTCATTCCAGAAAGTTGTTGTTTTCCCCCCTCAGCCCACGTTCACTCGCCTTCACAGATCTGACAGGACTGACTGGATGGATGAATGCAACATGGTGGAATCTCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTCAATCTGACTGGATGGATGAAAGCAACATGGTGGAATCTCCAGCATTTATCCAATCTGAAGGCTTGTTTTCTTGGCACCTACTGtaccagggcccatattcacaaagcatctcagagtatgaCGGCTGTTCGAGGATCAGTTTTCCCTTTTAAATCATAATCATTAGGATTATATAGACAGGGAGGGGGTGCTGATCCTAGACTGAATACGGGCCCAGTCAGATGTCTTAGATCTGTGAGACGGACTAGGGGAGTGAACGAGCTAGGGCAAAGGAAGAGAAGCAACCTTTTATGATGAACTGCACACTCAGACCAGGACAGATCAAATATTTATACTAAAATATATATTCCATTACCTCTACATCAATATGCATGTAGCTGCTATTTTAGTATTCCTTTTCCTTTGGAGGATGAAGGTTAAAATCAATTCAACCTTTCCTATGGCCTTGATTTtaaatgtgtgtattgtgtgtatgaaCTACTGTCACATTTTACTTTCAGATTTATACTGAATTCTCTATTTATTCCAACTATTAATCAAATCAGAATGCAGAGGGGAATATTTGGTCATAAATATGCAAATACAAGGTCACATGGCCATAATCACCACCGAGCTGTTTCATCTCTTTTACACTGCTTGTCATAGGACTGCATGACTCACTGAGGCCTGGGGACACATGTATCAAGCGTCTCTGAGTAGGAGAGGCTGATCTATGGACAGGATGGAGCTAATCAGTACTGCTACTCTGAAATACATACTGTTCTTCACACAGTAACGTGTTCAAGTCAAAGTATATTCGTTTGCAGAGGTCTTTTCATTGTTGAAATGTTTTCACTCTCAATACCACATGTTTAGgctactataatatatagatatttttggaCCATGTAGTGTAGTTCTTCACACTCAAAGTCATCTTGCTGTCtcagatatctaaatatatttatatgTGATTGCAAAGGAACATTCTGGCCCATTGGTACATTAGTCTATTATTGTTATAAGCCATTATGGTCCCTGACACCAGCATCTAATCGTAATGTGTATGAATATTAGTCATAGTTTTAATATTGTAAATGTTTCTGTCATATATTTTTCAACCTGGTAAAGGGGATGTACTTGGGCTAAGAGAGAGCGTCTATAACCAGCACTGGTGGTTTGGAGACCTGTGGTTTTGCGATcaatggaggctggtgggaggagctatagaagGACAGGCTTATtttaatgtctggaatggaataaatggaacagagtcaaacatttGGTTTgcatatgtttgataccattacATTTATTCCATTCAAAcctttacaatgagcccatcctcctacagctcctcccaccagcctccattgTTTGAGATTATATAAATGTCAAAAAATATGTTTATGTATTGCACAGAGAGAAAtctaaaaagaaagaaaaacagcaATATTAATGATGGTAACATACAAATAAAGATATGTAGTCTGTATAAACATAATCAACCTGTGgttatgcaataaaatcttttttatatatatagaaacaaaaaaa
>XM_036968056.1
GCATCACGGTCTCACCTACACCTCTGCTCAGAGCCGCGACGCCCCTCCCTCTCCCGGTCCACACCGATAAATGGGTTAATGCTGTCACCAGGAGAAGACAAATGAACCGAGCACACACAACAGGAGATCCCTTTCTCCCGAACTAACCCCTCTTCGCTCGCCGTTGCTGCTTTATCGATTGAGAAGAAACATTCTCCTTCATTTGTTTTTGTGATTCGGAAAATATTTGATCTGCAAGCTTTATTGAGACAGAGAAGCGGACTGGTATCACCGGCGCTCCAGATCCGTGGGCGACTGGGCAGGGaggtgtctgtcggtctgtctgctgCAGGAGTGAATCATTGCGTCGGGGCTCGGAAGATTAGACACCCCGCTTATCACCACTCCAACTCCCGGAGGTCTCTGATGGTATTTGGAGATAGAGACGGATAAGTGAGCCAATTCAAATAGATTACAACTAAACTGATATCGTCTGTGCACCTATTAAGTAGCCTGCCCTATAGGATTTTAAATGGGGTTTTAAAAAGGCACTACAAGTCTCACTGGAGACTTGGATCAGTGACGTTTTGGCGTTTGCCATATCAGGTGATCTTGAAGAGTGAAAAGAAAAGATTTGAAGATCATTACATTTTGGGGGGGATCCCAATCACTTCCAGAAAATAGCTGTCTGATATGAGTGTAAACAGAGTCGAGTCTGGGTGACCCCCCTAGCCTGATAAAAACGGATTGAATCTTAATTGACCGGATCAGCGTCTTAACAGAGAGAAGATGCCGTTCCACCACGTCaggtctactctgctctacacTGGAAGTCTCCTGAGCCGGACACTGTCTGAAGGGAGCGAAACCTTCCAACTCACcagcatctccacagaggagctaggagAGATCCGGGAGGCGTTCCGGGTGCTGGACCGGGATGGGAACGGGTTCATCTCTAAGCAGGAGCTGGGCATGGCTATGAGATCCCTGGGGTACATGCCCAGTGAGGTGGAGCTGGCCATCATCATGCAGAGACTAGACATGGATGgtgatGGTCAGGTTGACTTTGAGGAGTTTGTGACGATATTGGGACCCAAACTGCTGTCGTCTGAGACCAGAGAAGGTTTCCTTGGAAGCACCATCGATAACATCTTCTGGCAGTTTGACATACAGCAGATGTCCCTGGACGAGCTGAAGCAGGTTCTGTTTCACGCATTCCGAGACCACCTGACGATGAAGGACATCGAGAACATCATCATCAACGAAGAGGAGAGCCTCAACGAGACAGGGAACTGCCCCGAGTacgagggagTCCATCCTAAGAAGAAGAACAGACAGACATGCGTGAGGAAGAGCCTGATCTGCGCCTTTGCCATGGCCTTCATCATCAGCGTCATGCTCATCGCGGCCAATCAGATGCTGCGGAACGGCATGGAGTAAGCCAATCACACTGTGAGCCTGGGGAGTGGGCCTTACAGTTAAATgacctcacttcctctctctgcagcaaAAACAGGAAGACAGACCAGCCAGAACCCAAACACCTCTGTGAAGGACAACTATCTGTTATTTTAATGACGTTTGTTTTGATTTATATCATGAACAGTAAACAGACAAGAGAGTGCAAGTACTGAAGGACACACACGGAAAATGTCATTTTCAGTGGAAAaaaagacaaatcaaatcaaaaacacTAAGAGGACTTGATGAACAGACTGGACATGATACAAAGCAATCTTTTATATTTTGTGGGCATAAAGGGATTCCTTTCATTTCTGTATCAGAGAAGGCCACCCCTTTTAGAATGATTTTCTAACCACCcctttaaaataaatgttttgtttttttacctccTATTTAAAAGATCAATTGTCTAATCAAAAGCAATCTATTGAACATGCATCAGGTGCTTTGAGCCATTCCTAATTTTTAACTGAACTTTTGGTTCTGGGTTTACTTCAGGGGGGAAACATTACCTGACAAGCGCTCCTGCTGTTTAATGTTTTAAACTGTATCTAAACGTGTTAAtctgttattttttattattattctacTATCTTATATATTTACATGTTATAGTCACTCACCTGTGGACATTATACCAATGTATGTTTACACTGTAACAGAGATGGTTCGTGACTTGAGGACAAACTCGTGTTAGCTCCCAGAACAAAcccctaggctttagctcagctgACTTCCATAGTCTTAAATCACATAGGCATCATTCTACACCTGACATTCCCTCCCTCACAATGTTGCTACAGTATAGTCGactgtgtctgtctctatgtctgtctgtatgcacTGCATGTGACTCAGTGGATATTTAAAGGCACTGTAGGTTTGTACAGTATTTACCGTATGTTGTGTCACTCTACGTGTCCATAGGGCGGTGTTCTGTGTCAACTGTCCCTAAAGGCTTGGAACATGAACCACCTGGCCTTCTTGGTCCATGAATAATAAGGTTGTGGTCATGTAAAATTGCTTTTCATTCCAGAAAGTTGTTGTTTTCCCCCCTCAGCCCACGTTCACTCGCCTTCACAGATCTGACAGGACTGACTGGATGGATGAATGCAACATGGTGGAATCTCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTgactggatggatgaatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGCCCACCTCCTATCCAATctgactggatggatggatgaaacaTATCCAATCTGACTGGATGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTGGATGGATGAAACATATCCAATCTGACTGGATGGGATGAATGCAACATGGTGGAAAGTCCACCTCCTATCCAATCTGACTCAATCTGACTGGATGGATGAAAGCAACATGGTGGAATCTCCAGCATTTATCCAATCTGAAGGCTTGTTTTCTTGGCACCTACTGtaccagggcccatattcacaaagcatctcagagtatgaCGGCTGTTCGAGGATCAGTTTTCCCTTTTAAATCATAATCATTAGGATTATATAGACAGGGAGGGGGTGCTGATCCTAGACTGAATACGGGCCCAGTCAGATGTCTTAGATCTGTGAGACGGACTAGGGGAGTGAACGAGCTAGGGCAAAGGAAGAGAAGCAACCTTTTATGATGAACTGCACACTCAGACCAGGACAGATCAAATATTTATACTAAAATATATATTCCATTACCTCTACATCAATATGCATGTAGCTGCTATTTTAGTATTCCTTTTCCTTTGGAGGATGAAGGTTAAAATCAATTCAACCTTTCCTATGGCCTTGATTTtaaatgtgtgtattgtgtgtatgaaCTACTGTCACATTTTACTTTCAGATTTATACTGAATTCTCTATTTATTCCAACTATTAATCAAATCAGAATGCAGAGGGGAATATTTGGTCATAAATATGCAAATACAAGGTCACATGGCCATAATCACCACCGAGCTGTTTCATCTCTTTTACACTGCTTGTCATAGGACTGCATGACTCACTGAGGCCTGGGGACACATGTATCAAGCGTCTCTGAGTAGGAGAGGCTGATCTATGGACAGGATGGAGCTAATCAGTACTGCTACTCTGAAATACATACTGTTCTTCACACAGTAACGTGTTCAAGTCAAAGTATATTCGTTTGCAGAGGTCTTTTCATTGTTGAAATGTTTTCACTCTCAATACCACATGTTTAGgctactataatatatagatatttttggaCCATGTAGTGTAGTTCTTCACACTCAAAGTCATCTTGCTGTCtcagatatctaaatatatttatatgTGATTGCAAAGGAACATTCTGGCCCATTGGTACATTAGTCTATTATTGTTATAAGCCATTATGGTCCCTGACACCAGCATCTAATCGTAATGTGTATGAATATTAGTCATAGTTTTAATATTGTAAATGTTTCTGTCATATATTTTTCAACCTGGTAAAGGGGATGTACTTGGGCTAAGAGAGAGCGTCTATAACCAGCACTGGTGGTTTGGAGACCTGTGGTTTTGCGATcaatggaggctggtgggaggagctatagaagGACAGGCTTATtttaatgtctggaatggaataaatggaacagagtcaaacatttGGTTTgcatatgtttgataccattacATTTATTCCATTCAAAcctttacaatgagcccatcctcctacagctcctcccaccagcctccattgTTTGAGATTATATAAATGTCAAAAAATATGTTTATGTATTGCACAGAGAGAAAtctaaaaagaaagaaaaacagcaATATTAATGATGGTAACATACAAATAAAGATATGTAGTCTGTATAAACATAATCAACCTGTGgttatgcaataaaatcttttttatatatatagaaacaaaaaaa

Function

NR:

description
PREDICTED: calcium-binding protein 8-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968055.1 False 4491 mRNA 0.43 6 35969456 36030387
XM_036968056.1 True 4762 mRNA 0.43 6 35969456 36032625

Neighbor

gene id symbol gene type direction distance location
supt6h LOC106602907 coding downstream 19083 35911028 ~ 35950373 (-)
LOC118945336 NA coding downstream 31535 35936744 ~ 35937921 (-)
LOC118945335 NA coding downstream 32900 35935360 ~ 35936556 (-)
LOC118945690 NA coding downstream 77072 35892318 ~ 35892384 (-)
LOC118945706 NA coding downstream 77740 35891642 ~ 35891716 (-)
nf2b LOC106563816 coding upstream 92390 36125015 ~ 36147223 (-)
LOC110510222 LOC106563811 coding upstream 130524 36163149 ~ 36165830 (-)
LOC110510224 LOC106563813 coding upstream 159478 36192103 ~ 36194036 (-)
LOC110510219 LOC106563810 coding upstream 162784 36195409 ~ 36196374 (-)
LOC110510218 LOC106563809 coding upstream 168143 36200768 ~ 36221187 (-)
G2179861 NA non-coding downstream 7180 35961204 ~ 35962276 (-)
G2179856 NA non-coding downstream 13779 35953404 ~ 35955677 (-)
G2179850 NA non-coding downstream 55145 35913710 ~ 35914311 (-)
G2179803 NA non-coding downstream 63942 35874221 ~ 35905514 (-)
G2179847 NA non-coding downstream 71467 35897225 ~ 35897989 (-)
G2179902 NA non-coding upstream 6778 36039403 ~ 36096507 (-)
G2179924 NA non-coding upstream 47759 36080384 ~ 36080677 (-)
G2179961 NA non-coding upstream 123590 36156215 ~ 36158086 (-)
G2180042 NA non-coding upstream 263885 36296510 ~ 36296984 (-)
G2180062 NA non-coding upstream 297887 36330512 ~ 36330737 (-)
G2179862 NA other downstream 6624 35961984 ~ 35962832 (-)
G2178372 NA other downstream 1160153 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1627643 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1822137 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2457130 33511296 ~ 33512326 (-)
LOC110510209 LOC106563761 other upstream 471848 36499597 ~ 36596534 (-)
G2180120 NA other upstream 473915 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 944529 36975909 ~ 36979761 (-)
G2180587 NA other upstream 949332 36981957 ~ 36982709 (-)
G2181143 LOC100136155 other upstream 1200244 37232869 ~ 37233899 (-)

Expression


Co-expression Network