LOC110510217 (LOC106592238)


Basic Information

Item Value
gene id LOC110510217
gene name LOC106592238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36210084 ~ 36211474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591601.2
TAGTCCTCCCCCATTCGGACTCAGACCTAGAGCAGCACATGGAGACGACCACCCACTGTATTCAGATTACACAGAGAGAAGACAAAGAACCTCTACgccacatagagagagaggagacacagacgAAGACAAAAGGCCATCCAGTTTCACTCAGACAcgcagacaaacagagaaaccAACGCCAACCAGATCCAATATGGTGTCAGCTGGGTTACAGATGCTGGGCACGGCCCTGGGGGTCATTGGCTGGATCGGGACTATCATTGAATGCGCCATGCCCATGTGGAGGGTCTCCGCCTTCATTGACAGCAACATCATCACCTCTCAGGTCATCTGGGAGGGTATCTGGATGAGATGCGTGGTTCAGAGCACGGGCCAGATGCAGTGTAAGATCTATGACTCCATGTTGGCCTTACCTCAGGACCTTCAGGCTGCCAGAGCCATGACTGTCATCGCCATCCTCTCCGGCATCATCGCCATCCTATTGGCTGTAGCCGGGGGAAAGTGCACCAACTGTGTGGAGGACGAGGCGTCCAAGGCTAAAGTGGGCGTGGCGTCTGGGGTGGTGTTCATCATTGCCGGGGTTCtatgtctgatccctgtctgctGGACGGCCCACAGCATCATCCAGGACTTCTACAACCCGCACCTGCCAAGCGCTAAGAAGAGGGAGCTGGGGGGCGCGCTCTATATGGGTTGGGGGGCAGCTGCCATGCTGCTGATTGGAGGAGGCCTGCTCTGCTTCAACTGCCCCGAGAAGGACGAGGGATCCTACACCGCCAGGTACAACAAGTCCCCTCGCTCTGAAACCTTGGGGCCAGCCTCTGTGAAAGACTACGtctgagaaaggaagagagggagagagagagaagaatggaagagcAAGAGTGGAAGCGAAGAGAGCGAGGTCTGTCTGCCATgggagactgtctgtctgtagctgaGATCCAGCTAAATTGACTCTATTCTGGCACTATGGTGCTGCTGTATTAGGAAGGTTTGATAATGAGGATATTTGAAGGTGATGAGCAAAGAGGAGGACCACAGTGACTAAAGAGTCCACGGAAGTTACAGTTGAAAGTGAACCACAGCTGAAGCTAGGTATAAAATATACTTTAGAACAAGAGGATTCTATCCCATAAGTCTTTGCATAAATATTGTCTGAACCTGTATATTCTCGACTTAGACCTGAAGAAGGAACTGAATTCCTTAAAAACAACCCCATGCAGTCTGCAACATTGTCCTGGGCTGGTTtggctgtgcgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtacacgttatTGTTAATATTGTCATGTGTAGCTTTTCTTAAAGTGTATGAGTTACAGTAGATAGTTCTGAAACTGTAAATAAA

Function

NR:

description
claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591601.2 True 1391 mRNA 0.51 1 36210084 36211474

Neighbor

gene id symbol gene type direction distance location
LOC110510219 LOC106563810 coding downstream 13710 36195409 ~ 36196374 (-)
LOC110510224 LOC106563813 coding downstream 16048 36192103 ~ 36194036 (-)
LOC110510222 LOC106563811 coding downstream 44254 36163149 ~ 36165830 (-)
nf2b LOC106563816 coding downstream 62861 36125015 ~ 36147223 (-)
LOC110509452 LOC106563653 coding downstream 177459 35969456 ~ 36032625 (-)
bicdl2l LOC106563772 coding upstream 173794 36385268 ~ 36394770 (-)
sumf2 sumf2 coding upstream 212936 36424410 ~ 36447869 (-)
LOC110510211 LOC106563768 coding upstream 242454 36453928 ~ 36463448 (-)
LOC110510210 akt2 coding upstream 261318 36472792 ~ 36488924 (-)
LOC110510209 LOC106563761 coding upstream 288123 36499597 ~ 36596534 (-)
G2179961 NA non-coding downstream 51998 36156215 ~ 36158086 (-)
G2179902 NA non-coding downstream 113577 36039403 ~ 36096507 (-)
G2179924 NA non-coding downstream 129407 36080384 ~ 36080677 (-)
G2179861 NA non-coding downstream 247808 35961204 ~ 35962276 (-)
G2179856 NA non-coding downstream 254407 35953404 ~ 35955677 (-)
G2180042 NA non-coding upstream 85036 36296510 ~ 36296984 (-)
G2180062 NA non-coding upstream 119038 36330512 ~ 36330737 (-)
G2180066 LOC106563774 non-coding upstream 146686 36358160 ~ 36359289 (-)
G2180067 NA non-coding upstream 147926 36359400 ~ 36377438 (-)
G2180086 NA non-coding upstream 183996 36395470 ~ 36395789 (-)
G2179862 NA other downstream 247252 35961984 ~ 35962832 (-)
G2178372 NA other downstream 1400781 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1868271 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 2062765 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2697758 33511296 ~ 33512326 (-)
G2180120 NA other upstream 295066 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 765680 36975909 ~ 36979761 (-)
G2180587 NA other upstream 770483 36981957 ~ 36982709 (-)
G2181143 LOC100136155 other upstream 1021395 37232869 ~ 37233899 (-)

Expression


Co-expression Network