sumf2 (sumf2)


Basic Information

Item Value
gene id sumf2
gene name sumf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36424410 ~ 36447869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968195.1
GTCGGACCACAGTTTCCGGTCCGTCAGTGAAAATAGTCCGACTGTAATTGTTTCAGGGTTCAGTGTAAAGCTGAAGAAGTATATATATACAGAACACAATGGCTACTTAGAGAGCGTGGATCTATGGTGCTCGAAGTACATTAACGTACTTACCCAGGACCTGCACATTCCACTGGTTTATGAAAACACGATCGCCTTATCAATTTATAAACCATGAACCTCAGAATAGTACTTATTTTGTGCCTCTCCGCTCTGTCTTGCATCGCAGACGATGAAGGAATGGTGAAAATTCCAGGAGGAAAGATGACGATGGGGACGAACTCAGCCGACGGCAGGGATGGAGAATCACCCACGAAAGAAGTGACAGTCGATCCATTCAGTATCGATAAATATCCCGTCACTAATTCTGACTTCAGGGAGTTTGTCAGGGCACAGAAATACAAGACTGAAGCGGAGACTTTTGGCTGGAGTTTTGTGTTCCAGGACTTTGTGTCTGAAGAGCTGAAGAGCAAAGTCACAGAGAAAATAGAGTCAGCACCTTGGTGGATGCCAGTCGAGCGGGTGTTTTGGAGGCAGCCTGCAGGTCCTGGTTCTGGGATCCGGGAGCGTCTGGACTCCCCAGTGGTCCAGGTGAGCTGGAACGATGCCCAGGCCTTCTGCAGCTGGAGGGGGAGGAGGCTGCCCAGCGAGGAGGAGTGGGAGTGGGCTGCGCGTGGGGGTCTGCAGGGTAGAACGTATCCCTGGGGAAACAAATTCCAGGCCAACCGCTCCAACCTGTGGCAGGGCCTTTTCCCTGATGGAGACACAGCAGAGGACGGTTACCATGGTATCGCCCCTGTCACTGCTTTCCCTCCTCAGAACAGTTTTGGACTATATGACATGATAGGAAATGCATGGGAGTGGACATCTACACCCTTCCCTGGAGGACGACCAATGTTCGTGCTGCGTGGTGGTTCCTGGATCGACACGGAAGATGGATCAGCCAATCACAAGGCTCGAATCACGACCAGGATGGGGAACACTCCAGACTCGGCTTCTGATAACCTGGGCTTCAGGTGTGCTGCCAGGAATGACAAAACGGAGCTGTAGGGACCAATGAACGAAGACGATAAAAATGATGCCACAAGGGAGAGCAAGATAGCAACCAATTATAGGTGCTATGCAGTGACCATAGCATTTAGTAAAGTCAAGACTCAGACAGTGGTGATGATGTTGATAATGTGCAGGAACATTTTTCTCCTGTGGAGACCTGGGCTCAAATCAATCTGCTTAACCTATGTGTCTTTTTCTACAAACTACTGTAATACAAGCAATAAACAAGATTTTA

Function

symbol description
sumf2 Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human SUMF2 (sulfatase modifying factor 2).

NR:

description
sulfatase-modifying factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968195.1 True 1327 mRNA 0.49 9 36424410 36447869

Neighbor

gene id symbol gene type direction distance location
bicdl2l LOC106563772 coding downstream 29640 36385268 ~ 36394770 (-)
LOC110510218 LOC106563809 coding downstream 203223 36200768 ~ 36221187 (-)
LOC110510217 LOC106592238 coding downstream 212936 36210084 ~ 36211474 (-)
LOC110510219 LOC106563810 coding downstream 228036 36195409 ~ 36196374 (-)
LOC110510224 LOC106563813 coding downstream 230374 36192103 ~ 36194036 (-)
LOC110510211 LOC106563768 coding upstream 6059 36453928 ~ 36463448 (-)
LOC110510210 akt2 coding upstream 24923 36472792 ~ 36488924 (-)
LOC110510209 LOC106563761 coding upstream 51728 36499597 ~ 36596534 (-)
LOC110510208 LOC106563760 coding upstream 196079 36643948 ~ 36663311 (-)
gfpt2 LOC106563757 coding upstream 217133 36665002 ~ 36682231 (-)
G2180095 NA non-coding downstream 1298 36422906 ~ 36423112 (-)
G2180094 NA non-coding downstream 20364 36402173 ~ 36404046 (-)
G2180086 NA non-coding downstream 28621 36395470 ~ 36395789 (-)
G2180067 NA non-coding downstream 46972 36359400 ~ 36377438 (-)
G2180066 LOC106563774 non-coding downstream 65121 36358160 ~ 36359289 (-)
G2180102 NA non-coding upstream 2147 36450016 ~ 36450306 (-)
G2180103 NA non-coding upstream 3247 36451116 ~ 36451326 (-)
G2180110 NA non-coding upstream 20704 36468573 ~ 36469873 (-)
G2180112 NA non-coding upstream 41743 36489612 ~ 36489898 (-)
G2180114 NA non-coding upstream 49319 36497188 ~ 36497491 (-)
G2179862 NA other downstream 461578 35961984 ~ 35962832 (-)
G2178372 NA other downstream 1615107 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 2082597 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 2277091 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2912084 33511296 ~ 33512326 (-)
G2180120 NA other upstream 58671 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 529285 36975909 ~ 36979761 (-)
G2180587 NA other upstream 534088 36981957 ~ 36982709 (-)
G2181143 LOC100136155 other upstream 785000 37232869 ~ 37233899 (-)

Expression


Co-expression Network