LOC110510204 (LOC106563756)


Basic Information

Item Value
gene id LOC110510204
gene name LOC106563756
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36683012 ~ 36693105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591580.2
AACCACGTACCATCACTGTGCGGAATTTCCTTTATTCTTCACATAGGAAACTGGATATCATGGCCGAGATGTGTCTTTGGTGTTCTGTAACCTTTCCCATTGACATTGTAAGGTTAAGACTCTCTTCAACTTTAACGTGTCTGTTGTAAGCGGTGTAGGGCCTTTTTATCTGGTCCAGTCCAATCTTTTGTCAGGTTGGATTCATCTGAACACTACCTCATTGTCAGCCATAAGAGTCGGCCTTCTGAAACAATGTCCAGATCAGGCGATATACCAGCCCTGGAGTCTGGGACCTCAGAGGGGCAACTGGGAGGCCTGTCCCTACCTATTGGCATGACCCGCCGTGCCATGAGCTATGATGACAACATGGAGGCGCCCATGTCGCCGCCTCCCTCTGATATCAACATCAACAACCTGTGGGCAAAGAGGCCTGTCGTCCCACCCAGGAGGTTCCGTCATCAGGCTGAGGAGGATGAATCTGGAATGACCCTAACCCACGCTGCGCCTTTTGACCCTGGCCACAGGCCAAATATGCCTGCCGTGGTGAAGGCCAAATCATCCTCCGTCATCATCAACTCTCTCATGACCAAGCAAACCCAGGACAGCATGTACAGGTTTGAGCAGCAGGCTGGGCTGAGAGACACTGGGTACACCCCCCATAAGGGCCTCACTGCTGAGGAGACCCGCCACCACCACCGTATGCCTGAGTCATTCCAAAAAATGAACATTCAAACTGTGGATATGGGAGCGGGACATAAGGGAGGACATGAGGACAAGCAAACATCATCTGCTCAGTCCACCCCGAATAGCACTCCTCAGAGCTCACCTAAACAGAACCGCAGGGGCTGGTTGTCCAGCCAGAGCTCGACAGCATCTGTCAGTAGCTCAGACCTCAGTACCAGCTCTAACACCAGTGTGGACATGGGTGAGGGGGGAGGAGCAGTCGAACGCTGGGGTATCTTTGGACCACGTCCGGTTGTTCAGAAATCCACTACCGACCCAGGGGGTTTTGCTCTCCAGTCGTACCGCGGGGCCCAGAAGCCCACCCCCATGGAGGTGATGAAGGCTCAGGCCACTCGGCTGGCTTATGACCCTGCTGTTAACCAACAGGCCCCTCCCAAGATGGAGATCCCCACCACGGAGAGCAGTAGACTGTCGGCacggccacacaagctcaaacCTCGAGACATAAATATCCTCACGCCCTCAGGTTTCTGAGACGTACCATGTTGTCACTACTCCTTCATTTTGTAGCTGGTCTACCATCTAGTCCAAGGCTCTCCAACTCtgctcctggagagctaccgtcctgtaggttttcactccaacctgattcagcttaacaaccagctaattattggAATCAGGACAGTGGCGctcctggaacagggttggagagccctctGGTCTAGACTATTCTCTCCCCACTTCTATTATTTAACACCCTTGTTTTGCCTCAGCCTTTTGCCTTGTAATAGAACCGTGTATATTTACTTTGTATGTATGGTCCGACTGTGAAGATGTTCTGATGCATGGTGTTGCAAAGTGTAACTAACTCTCACTGTTTTGACAAAGACTGTAAAAGTCCAAATGTGTTCATGGTTTGGTCATTCAGTTGGCTTGTGAATCTCATTCAGAAGTACACTATCACCAGCTTTTCATTGTCTGTAGATTTCTGTACGATGTAATGATTCACATTTGTCATGTCTTCAAGAACATTATGGTGATTATTGTTCACCCTCAAGGAAGTGTTTTTCTTTCCGTGTATCCGCATTCCTGCTGTCAAGTCGACCGTTTTGAAGTTGAAACACTGTCAGTAAAACCCTGCAACAGAATGTTAATAACGTTGCATATTAATCAGAGAACTGTTACTATTTGACTGACCCTATTCAGGTATTTtcactttttttatatatagaaAAAGATCCATATATATACCTCACCTGTGGTCTTTGTTGTAAATATCTGATTAAATTACAATGATAACTACAGTATAAAAGTATGGTTCCATCTTCCAGGATTTGCCTGAACCATCAACCTTCCAGAAACAGTGGAAAGATGGTCAGCACTGCAGAGGTCAAAGAACCTGCCGGTGAAGGATGGATTTTAATTGGGATTTGGAAATGTATCTTTTGGTCAATTTCATAACCGTTTCTAGGTCAAGAATAGTTACTGATTGACAGGAATGGAAACCTGCAGCTGTTACACTGTGATGGTCACGTCTTCAGCAGATACTAACTATCGCCAGTAGGTGGAATCCCACTCTTTGTGACAGACACCATCTGCACTGTGGCTGGACAACTCACAGGCTGCAGATCTCGGATTTAATTTAACCATGTACAGTATTGCTATGTCAGCCTGTAACTGTTCCCCTGACTGATATACTGCCATGTGAGATTCCCTCGTGTTTACTAATTGTTAATGAAGCCGGTGAATATCAATAGCTCAGTTGTTCATGTAAAACAAATAGGCACAAACAGCCAGTCAGCTGATATTCCCTCTATGCTTTAACATACTGGGTTTCCTCAGCCCCCCATGGCATCATTCAAAGCCACCCTTCTTATTGCCACAGGCACAACCCATGCCTTCCAGTAATCATTCCCGTTCCCCCACCAAATCTCTCCCAGAGTGACTGCATAGCATGTCATTTCCTACACCTACGCGGTGAGCCCTGTGGGATGTCTGGTGTTGATCTGGAGACAGCGGCCCACCCTCGCCTCGGCCTGCTGCCCAGCCAGTGACTGAGCATTCTGCTCTCTGACTTGCTGTTTGTTATGGAGCAAAAACTCTGTGGGCCACACCAATATATCTGGGGGAGAAGGCGATCATAGTAAAATCTACACAAAGGAACTCTCGCCCGCAATCTTGATGCAACAAGATACATTTCTCTATTGGCTGTCACTTGGATTCAAAGGCTTTTATGACGCAGTGGCTCTTAACTTTATCTTCAAGAATCTCTTCTAGATCACCCACACAAAGTTAAGCAATAGTTGGAATTGTCAGTTTTGATGGGTACGTCAGCACACCATGACATCACCATGGGAACGTTCATGGGAAGGCTTTCCCTTTCATAATAAAAATATATGTTCTTTAGCAGCTTT
>TU2492281
GACAACTCACAGGCTGCAGATCTCGGATTTAATTTAACCATGTACAGTATTGCTATGTCAGCCTGTAACTGTTCCCCTGACTGATATACTGCCATGTGAGATTCCCTCGTGTTTACTAATTGTTAATGAAGCCGGTGAATATCAATAGCTCAGTTGTTCATGTAAAACAAATAGGCACAAACAGCCAGTCAGCTGATATTCCCTCTATGCTTTAACATACTGGGTTTCCTCAGCCCCCCATGGCATCATTCAAAGCCACCCTTCTTATTGCCACAGGCACAACCCATGCCTTCCAGTAATCATTCCCGTTCCCCCACCAAATCTCTCCCAGAGTGACTGCATAGCATGTCATTTCCTACACCTACGCGGTGAGCCCTGTGGGATGTCTGGTGTTGATCTGGAGACAGCGGCCCACCCTCGCCTCGGCCTGCTGCCCAGCCAGTGACTGAGCATTCTGCTCTCTGACTTGCTGTTTGTTATGGAGCAAAAACTCTGTGGGCCACACCAATATATCTGGGGGAGAAGGCGATCATAGTAAAATCTACACAAAGGAACTCTCGCCCGCAATCTTGATGCAACAAGATACATTTCTCTATTGGCTGTCACTTGGATTCAAAGGCTTTTATGACGCAGTGGCTCTTAACTTTATCTTCAAGAATCTCTTCTAGATCACCCACACAAAGTTAAGCAATAGTTGGAATTGTCAGTTTTGATGGGTACGTCAGCACACCATGACATCACCATGGGAACGTTCATGGGAAGGCTTTCCCTTTCATAATAAAAATATATGTTCTTTAGCAGCTTTGATCCAAAGTGACTTAGAGTCATGTTTCATTCCTATATTTATTGTCATTGATGAAATTATTTTATCAACTACAATATAAATACACACAACTCAACACACTCACCCAACACACtcaacaacacactcacacaacacacTCACCAACACGCTCACACAACACTCAACAACACACTCAACAACACGCtcacacaacacactcacacaacccaCTCACCAACACACTCAACACACTCACCAAAACGCTCACACAACACACTCACCAACACGCTCACCCAACACACtcaacaacacactcacacaacacatTCACCAACACACTCACCAACACTCAACAACAGATTGACACAACCAGATGAACACATGTACAGGATCTACTCACAGACACAGCATCCGTTCGTCTAGCTGGCCACACCATCCCACACAGACGTGTCCACAAGAGGCAGAGGTGCTCTTCTGCATGACTGCTGATGACGGGGTTGTCCCCTGGTCTACACTGAACTAGGGTGGGGAGTGTAAAATCAGACAATGATAACGCTATATCCTCCTGGACCACATTAAAATGTGATTGAACACACTGACGACTATGCATTACCATGAAACTCATGaaacatttaaaaccattagAATAATGTCTGCCATAGGGAATATAGCCATTAAAAACAAATGGTCCATCTTTGAAAGCTATGTATAATTTTGTCTGAGTAAATGAGTAAGAAACAAAATATACATATTGCATTATTGTTGTGCTTTGATGTCTTAAAATCTGACACTCCCATCATCCCGTCATTTGTCTAATATCACATATATTATCTTGAGGAGTACTTTACCTTGATGAGAATAAACTCGTTGGTGAAATTATGACACTCCAGGTCCGGCTATTAGAAAAAGTATCTTGtatcatgtgtgtgtggtttggttttactattcttgtggggaccagaagtcctcacaaggataatAAAACAAGGAACATTTCGTTCTGGGTTAGATTTAGtttcagggttagtgttaggggctaagattaaggttaggttaggggttatggaaaatagga

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591580.2 False 3101 mRNA 0.47 8 36684066 36693105
TU2492281 True 1859 lncRNA 0.43 1 36683012 36684870

Neighbor

gene id symbol gene type direction distance location
gfpt2 LOC106563757 coding downstream 1835 36665002 ~ 36682231 (-)
LOC110510208 LOC106563760 coding downstream 20755 36643948 ~ 36663311 (-)
LOC110510209 LOC106563761 coding downstream 87532 36499597 ~ 36596534 (-)
LOC110510210 akt2 coding downstream 195142 36472792 ~ 36488924 (-)
LOC110510211 LOC106563768 coding downstream 220618 36453928 ~ 36463448 (-)
LOC118936290 LOC106563755 coding upstream 1129 36694234 ~ 36697607 (-)
LOC110510203 LOC106602921 coding upstream 12782 36705887 ~ 36795455 (-)
LOC110510202 cnot6 coding upstream 139158 36832263 ~ 36842130 (-)
LOC118945293 NA coding upstream 237168 36930273 ~ 36935334 (-)
LOC110510200 LOC106563752 coding upstream 242204 36935309 ~ 36950122 (-)
G2180177 NA non-coding downstream 81580 36602193 ~ 36602486 (-)
G2180150 NA non-coding downstream 116653 36564824 ~ 36567413 (-)
G2180121 NA non-coding downstream 164462 36517334 ~ 36519604 (-)
G2180114 NA non-coding downstream 186575 36497188 ~ 36497491 (-)
G2180417 NA non-coding upstream 5604 36698709 ~ 36699060 (-)
G2180420 NA non-coding upstream 8420 36701525 ~ 36701818 (-)
G2180421 NA non-coding upstream 8813 36701918 ~ 36702143 (-)
G2180480 NA non-coding upstream 107739 36800844 ~ 36801148 (-)
G2180481 NA non-coding upstream 108556 36801661 ~ 36801886 (-)
G2180120 NA other downstream 176946 36506540 ~ 36507120 (-)
G2179862 NA other downstream 721234 35961984 ~ 35962832 (-)
G2178372 NA other downstream 1874763 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 2342253 34338911 ~ 34342460 (-)
LOC110509384 NA other upstream 284049 36975909 ~ 36979761 (-)
G2180587 NA other upstream 288852 36981957 ~ 36982709 (-)
G2181143 LOC100136155 other upstream 539764 37232869 ~ 37233899 (-)
LOC110510193 LOC106563731 other upstream 541688 37234793 ~ 37241163 (-)
nsrp1 nsrp1 other upstream 790543 37482837 ~ 37498898 (-)

Expression


Co-expression Network