LOC118936290 (LOC106563755)


Basic Information

Item Value
gene id LOC118936290
gene name LOC106563755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36694234 ~ 36697607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591585.2
CAAGTCATTATTTTCGTGATGTAGCTGTAGCTGGGGAGAGATTGGAGATCACCAGTTGGTTGGAGGCAGCTTGTCTAGAGGCAGCTTGGTTGGAGATCACCAGTTGGTTGGAGGCAGCTTGGCTAGAGGCAGCTTGGTTGGAGATCACCAATTGGTTGGAGGAAGCTTGTCTAGAGGCAGCTTGGTTGGAGATCACCAGTTGGTTGGAGGCAGCTTGGCTAGAGGCAGCTTGGTTGGAGATCACCAGTTGGTTGGAGGCAGCTTGGCTAGAGgcggagagaggagtgagagcagGCAACGGAGACGAGCAAACGACACCAGCTGAAAGACAGATAAGACACAGGCATGCGTCCCCGCTCCAGACTCCTGGCTAAGAGGGGCCTACCCACTATCAGGGAGGGATATGAGGAGCTGGTCCAGGACATGAACCAGGCCAAcagcctccacctccctccccatGGCCAGGTCCACTCCTCTCTGTCTACCCAGGACTACTTCCTGTCCATCTGTCAGCTCGCCTGCCCAACCTTCCCACTGGCCCAACCTGACTGTGACATCCTCACTGTAGGCTCGATGGCCTCTCTGAGGCCCTGCCTGAGGCTGCACAGACTGAGGGACCCTGTGCCACTCTGTCAGCCTCTGATTTCCAACGTCAGCCACCACACACAGTTAGAGCAGGAGGAGAGTCAAAGTGAGTGTAGTGGCCCAGAGAGAGTGGTGAATGTCAGCTCAGGTCAGACCTCCAGTAGGGTTCTCCCCAGTGTCTCTGACCCCCTAGAGTTCATCTACGGTCATGGGGAGGAACTCCTCTTAGCTGCCTGTCACGCCCCTGACTCACAGGGCTGtaagggtgaggggagagagagtgtgacccaGCTTCGACCACAACCCCCGCTACGCGCCGACAGTTTCCCACGCATGTGTTCCGCGCCTCTGACACAGCACAAAGGCAGCTGCCCTGAGCTCTGCCTGATGGACCCCTCTGACCAAGAGAAGCAAAACCCTGACCCTGCTCCACCACAGACATCTTCATCAGACCAGCAGAAACCTGATGCCTCCAGCCCACTCTCCTGGAGGTTCCAGAACGACTCAGACAGGGCCCCTGCTGGTGGGAGGGGGAAGTGCACTCGCTACATGGACAAACACACAATGGTATCACACTGGATCGCTGACTGTCGCTCGGCCTGGAGAGAAGCCAGAGTCAGGGTGTGCATGCTTCCTGCCATTGCAGAGATGTAGACACATAGATCAGGTACAACCCTGTTAAGCCCTGCTGAGTATTGTACATAATGGATCCTTGATGTACTATACGTCCCACTTGATTGGTATGTTTGGACAATGCAGGCCCATATTGCAACATCTTCTCCTCGATGACTTTTCAGGCCTGACCTTTTTGTTTTACACTTTGTAATTTAAGACATATTGTAAACTAGCGTATGCCTCACAAAATATCACAGTCGGTGGAAAGTTGATCATGCCTTTAGAAGATTTTGGAAGACTAGTATTTGGGTGAATAAAGGTATGTGGAAAAGATGCTGAATTTTCTATGATTATGTACAAAGGCCTATCATTAAAAAACATGACGGATCCTAATCTTTCCGGTGTAGCGAGTTAATGATTCCATAACTATCGCACTCCGTTCTTTGCTAATGATAACTCTGGTCAAATCCAGTTGGCAGCTAAAACAGGAAAACCATTCTACTTTGAGAGTTTCATAACAAGTGAAATGGTACAGTGTTAGAAACGGAACTGAAGAAAATGTGATCCTACAGCTAGTTCAGGCTCCCTATAGCAGAGTATTTCAACTCAGATTATTCCCAGTGGTTCTGAAAATGCTTCTTGCGATTTCCTCTTCCCTGTATGATATAGGAGTTATGCAATGACAATGTAGGTGTGTGCAAAACTGAGCAGTCTGTTTCAATCTTCCACTTACTAAAGCCATGATGAAATAGTACAGATATTTTCAATCATATCATGTAATTCCCACTGAGTGAAACAGCATGTGAGATTGTTGTATTTCACTTTTTGATTGTGTGTTCTAATGGTCCTCCATGTTGTACAATGTCTGTCAAAATATATCAATTGAAAGACAACAATATTATCATTGACTTGTAAACGGTTGAGAGTTCAATCATgcacccgagtggcgcagctgtctaaggcactgtatggcagtgctagaggtgtcactacagacccgggtttgttTCCAGGCTATGTCACAACCGgcccgtgatcgggagtcccatagggaggagcacaattggcccggcattgttcgggttaggggagggtttggccgggggtggtaggccgtcgttgtaaataagaatttgttcttaactgacttgtctggttcaaaaaaatattttatcatttataGTACGGCTTTTGTACCTCTTTCCATTGTTGACCAGTAATCTAATAAATTATGTGTTTCACCCTG

Function

NR:

description
uncharacterized protein LOC110510204 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591585.2 True 2446 mRNA 0.49 2 36694234 36697607

Neighbor

gene id symbol gene type direction distance location
LOC110510204 LOC106563756 coding downstream 1129 36683012 ~ 36693105 (-)
gfpt2 LOC106563757 coding downstream 12003 36665002 ~ 36682231 (-)
LOC110510208 LOC106563760 coding downstream 30923 36643948 ~ 36663311 (-)
LOC110510209 LOC106563761 coding downstream 97700 36499597 ~ 36596534 (-)
LOC110510210 akt2 coding downstream 205310 36472792 ~ 36488924 (-)
LOC110510203 LOC106602921 coding upstream 8280 36705887 ~ 36795455 (-)
LOC110510202 cnot6 coding upstream 134656 36832263 ~ 36842130 (-)
LOC118945293 NA coding upstream 232666 36930273 ~ 36935334 (-)
LOC110510200 LOC106563752 coding upstream 237702 36935309 ~ 36950122 (-)
LOC110510199 NA coding upstream 255232 36952836 ~ 36962258 (-)
G2180177 NA non-coding downstream 91748 36602193 ~ 36602486 (-)
G2180150 NA non-coding downstream 126821 36564824 ~ 36567413 (-)
G2180121 NA non-coding downstream 174630 36517334 ~ 36519604 (-)
G2180417 NA non-coding upstream 1102 36698709 ~ 36699060 (-)
G2180420 NA non-coding upstream 3918 36701525 ~ 36701818 (-)
G2180421 NA non-coding upstream 4311 36701918 ~ 36702143 (-)
G2180480 NA non-coding upstream 103237 36800844 ~ 36801148 (-)
G2180481 NA non-coding upstream 104054 36801661 ~ 36801886 (-)
G2180120 NA other downstream 187114 36506540 ~ 36507120 (-)
G2179862 NA other downstream 731402 35961984 ~ 35962832 (-)
G2178372 NA other downstream 1884931 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 2352421 34338911 ~ 34342460 (-)
LOC110509384 NA other upstream 279547 36975909 ~ 36979761 (-)
G2180587 NA other upstream 284350 36981957 ~ 36982709 (-)
G2181143 LOC100136155 other upstream 535262 37232869 ~ 37233899 (-)
LOC110510193 LOC106563731 other upstream 537186 37234793 ~ 37241163 (-)
nsrp1 nsrp1 other upstream 786041 37482837 ~ 37498898 (-)

Expression


Co-expression Network