LOC110510188 (LOC106563734)


Basic Information

Item Value
gene id LOC110510188
gene name LOC106563734
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37284368 ~ 37296541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967496.1
gagagacagagagagacagagagaccgagagaaagagagagagacagagaggggagtacACTGCTGAGGGAGCCTGTCTGCTGTCACACGTGTCTGCCCTCACCTCCTCTGTACTCTAGCTTCACAGGAGACATACTGCACTCACCACATCTGGACCTACAGGACGTCAATGAGATCTGGCCTCTCAACCTCTACACCTCTTTTCTGATTAACCTAATCTACAAAGAATCTGATCCAAATACAAAGCCTTCCGAGGGAAACTCGATGGCAGAGGTTGTGGAAACACTTGGAAAGAACACAATGATACATGCTGTATGAAGTGAAAGAAAATCCTTCCTGGGGGGGGGGAAATGGTGTGTTTGAAAGGCACTCTACGGGGCTCATCGTATCCACACTCAAGGTCAGTTCCTGGCTAAGGAAAGAGGAAATCCTTGTGCTCTGTGGGATGAGAGTTCAACTGTGGTGCATTAGCTGATCCTTCATCATCTCCCCCTCCACCTGCTCCCCCTTTCATCATCGACACACTATGTGGATGTTGTTATCTTTAGCCGTATGGATTCTCAATGTCACAAATCTCACTCATGGATATGACTATGATGAGTATTACCCAGGCGAGGAGGAAACCAAGGCCCCGCTGGTTGGGGAGGGACTCAGTGATTTAGACACAGTGTCTAATGTGGACGAGCTGGTGGAGCTGTTGTACCCAGAGTACAGTCTGGTGCAGAATTGCCTACGTAGGAAAACCCAGCgcacctccactcctctccatgcTGAAGACGACGTCTGGGCCTGGGGCAAGCCCAGGGAGGGGGCACTGTACAAGTCTGACGACGGCACCTTTGACGTTATTCTGGAGGAGATCCAGCGTACCATGTGCAGTCCTCGGGAGGTGTGTCTGGAGGTGTCTAAAGAGTACCCAGAGAGCACCCGTCACTTCTACATGCCtcgctgtgtgtctgtgcacCGCTGTGGGGGCTGCTGTACCCACGAGGGTCTGTACTGCACCAACACCAGCCATACTTACAGCAACAAGACGCTGCTGGAGATGACTCACCGTGAACACTCTGTGGTGATGGTGGCGTTCGTCAACCACACATCCTGTGAGTGTCTGTCCAAGAGGCCCCAGCACTCCGTCATCAGGAGGGCTGCTGCAGCCCACCTCACCGTGTGTTCTCCGCCAGATGTTCCCTGCAGTACAGGACTGGTCTGGGACCCCACCAGCTGCCTGTGTGTTCCCATGGACACAAGCTTCTTCTCCGAGAGAGAGCTGGAACCCCTGGAGTCGGCCTTGCTGGCGCTGTGTGGCCCCAACAAAATCCTGGACGAGGacagctgtgagtgtgtgtgtgagaacggtCTGACAGAGGCCAGCTGTGGGCTGGGCTGGCGTCTAGACCAGGTGTCCTGTgagtgtctctgtgaggaccagcCCGCCCCGGGGACCTGCCCTCCCAACCAACGCTGGGACCCagagctgtgtggctgtgtgtgccGGGCAGAGTGCCCCCGTAGCCAGCCTCTCAACCCAGAGACGTGCCTGTGCCAGTGCAGGGATAGCCCTCAGACCTGCCTGCTAGAGGGCAAGAGGTTCAACGCACACAACTGCAGCTGTTACCGGCTGCCCTGCAGAAAGCCACACAACAGCTGTCCAACAGGCTTCTACTACAGCCACTACGTCTGCCAGTGCATACCCAACCACATGAGGTCAGGGGAGTGGAACTGACAAAGCTGGCGTTACCAGCACCGGTGTTACCAGTACCGGTGTTACCAGCACCGGTGTTACCAGCACTGGTGCCAAACTCTAGGGTCAATGTACTGTAACTGTATGGTGGAAACGAGGCGGTGTGTTTGCAATGTAGAGCCGGTAGATGGAGGCTAGAATAGGGGAATGTTTATTTAATGAATTCTCCTGATAGGCTGCGAGGCTCTCCATCGTCAGACCAGGGAACATACAATGAAGCACACAACGATGCAGTCGTCTAGATACTGCAGGTCATGGTCTGAATCATGGACATTATTGACATTGCCTCAGATTCATTATGTGTGGCTGttcaaatgagaaaaaaaatattcattCCATAAAATGAAATAATTTTCAATTATCTGACATTGATATTTATTGCAAGTGACCCTGCAGCTCTCCGAGATGACGATGACGTAACTGGGAAGAAACGCCCTGACATGAGAAGGAAGACAAAAGACTGAAATATAAAGcccatgcatatactgtattgtacAAAACGTGTGACTGTAGTCAGTGGTGGCTGTGAATGAAAAGTGTGTTTTTAATGTCATATCctatttgtattgtatttaaaATACACGCTattgataaaataaaatacaaacttGATTGGCTTTGGTAAATGTGTACGGTGTGTGTTTGATAAGAGTTTTGTGACAAGAAGTTTGGCAACAGACTATgggaaccagaccagactggcaCCATGGAGAGTGTGATGTGATGTCTCCAATCACAAAACAAAGGCATCGAAAAACACACACTCCTGCAGTGAAAATGGATCCAAGACCTTTGTCTCAAATTCCTCATACCAGCCGTATGTGTTTGGAACAATAAACACTATCTCGAGGTTAATTGCAGAGAGATCTAATTCCCGTCTGGCTTGTGTCTTTAGAAACTGCCATCCACAGTTGGTACTCTAAACCAGCGCAGCCCTCTGTACAGAAACAGGACTGCATAGCTAAACTCTGTGATAGTTGCAGTAGTTAGTTTGGTTTATAAGTAGGCctacagagtagagacagtaCTTTAGACGGTTGACTTATGGTCAAGGATGATATATGTTTTGTTAGCGGAAAGGtcactttttttgtttttacaaagTTCAATATTGTGAATCTCAATTTCAAGGCTACACCACCGTCTCAA

Function

NR:

description
vascular endothelial growth factor C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967496.1 True 2890 mRNA 0.50 7 37284368 37296541

Neighbor

gene id symbol gene type direction distance location
LOC110510193 LOC106563731 coding downstream 43205 37234793 ~ 37241163 (-)
LOC110510195 LOC106563727 coding downstream 211605 37059194 ~ 37072763 (-)
LOC110509384 NA coding downstream 306692 36975909 ~ 36979761 (-)
LOC110510199 NA coding downstream 322110 36952836 ~ 36962258 (-)
LOC110510200 LOC106563752 coding downstream 334246 36935309 ~ 36950122 (-)
LOC100136950 m-csfr coding upstream 7658 37304199 ~ 37314162 (-)
LOC118936394 NA coding upstream 21322 37317863 ~ 37318817 (-)
LOC110509442 NA coding upstream 26132 37322235 ~ 37331174 (-)
LOC110510185 LOC106563738 coding upstream 87780 37384321 ~ 37388247 (-)
LOC110509383 LOC106563737 coding upstream 108406 37404947 ~ 37407196 (-)
G2181184 NA non-coding downstream 4781 37279295 ~ 37279587 (-)
G2181182 NA non-coding downstream 7688 37276339 ~ 37276680 (-)
G2181162 NA non-coding downstream 62258 37221895 ~ 37222110 (-)
G2181100 LOC100194652 non-coding downstream 63855 37218932 ~ 37220513 (-)
G2181200 NA non-coding upstream 18717 37315258 ~ 37315740 (-)
G2181201 NA non-coding upstream 19454 37315995 ~ 37316274 (-)
G2181204 NA non-coding upstream 23162 37319703 ~ 37319916 (-)
G2181205 NA non-coding upstream 23455 37319996 ~ 37320300 (-)
G2181143 LOC100136155 other downstream 50469 37232869 ~ 37233899 (-)
G2180587 NA other downstream 301659 36981957 ~ 36982709 (-)
LOC110510209 LOC106563761 other downstream 687995 36499597 ~ 36596534 (-)
nsrp1 nsrp1 other upstream 187107 37482837 ~ 37498898 (-)
G2181304 NA other upstream 240124 37536665 ~ 37538240 (-)
G2181315 NA other upstream 484041 37780582 ~ 37787673 (-)
LOC110509458 LOC106592337 other upstream 864136 38160179 ~ 38237799 (-)
G2182508 NA other upstream 1618065 38914606 ~ 38914926 (-)

Expression


Co-expression Network