LOC110509442


Basic Information

Item Value
gene id LOC110509442
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37322235 ~ 37331174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509442
TCGTAAGACCACAGCATGGAATCACTCTTCTGGCTGATCCAGACAACGGCAGCATCCAGATGAGCGTGAGATACATTGAGACCTCAGGAGTCTACCAGGTCCGCAGCCTGTTGACCTTTCAGGCCATGAACAGTGTTATGTCACTACGCAACGACAGAAGTCACAGGGCCTGGGACATCAAACTCGTCTCCAACTctctGTTCTCCCAGGTGGCTGTGCTGGCTGCAGTGTTAGTCCTCGTAGTCATCACTGTCATCTTCCTCATTGCCCTCTGGAGAAAGAAGCCCAGCTATGAGATTTGATGGAAGGTGATGGAGTCAGCAAGCTCAGACAGCCATGAGTGCACCTACATCGACCCTATGCACCTGCCCTATGACTGTGAGTGGGAGGTGCCCCGAGACAGCATGGTCCTGAGTCACACGTTCAGGAGGGTCGTGGAGGCAACAGCATACGGATTTGGTCACACCCAGTCCACCACCAAAGTGGCTGTGAAGATGCTCAAGTCCACAGCAAGAAGAAGTGAGACTCAGCCTCTGATATCTGAGCTGAAAATAATGAGTCCCCTCGGGTCCCATGTAAACATTGTCAACCTACTCGGGACCTGTACCAAATGAGGTCCTATATACCTAATAACTGAGTACTGTTGCTACGGCGACTTGGTTGACTACCTCCACCGCAAAAGGCACACCTTCTTGCAGTACTacacagatttaaaaaatgcaggGATGCTGATATGTGCAGCACTTCACAATCAAAGACATACTGGCACTTACTGTTGTGCCCCTTCGTGTTTGTCAGAGAGAGCAATGGGGGTTACATGGACATGACTAAGGAGGATTCTTTAAATTATGTCCCCGTGCAAGAGCTGAGCGATAACGTCAAGTATGCAGGCATTGAGCTGTCGGCCTATGAGACAACCTACCATCAGGACAGCAAACAAGGACAAGGCCAAGAGAGAGCAGACATGGCGTTATCAGTGACTCCCCTATTCTGAGATACACTGTGGCTAAGGGCATGGACTTCCTGTCATCCAAGAACTGTTGTCCCTGTCCTCACGCTCTCGTCTGTGAGGAAAAGCTGGTTAAGATCTGTGACTTTGGCTTGGCCCATGACGTCATGAACAACTCCAACTACATAGCCAAACGCAGAATGACTCAATGGGTTACCTAA
>TU2493228
cccttgaatgagtatgtctgtccaaacttttgacttgtactgtatatattatgtcTCTCCCATCCTGGTCTGTACTAAGTAATGAAGGGGAAGAAACCATCAAACAGCCATTATGTTCTGAGGTGAAAGTGATTGAAACTGAAACACTGTTTTTATAAGGAACTTCCAGAAGTGGGTTAATACTTTGCGCAAACTATTTTTTTTTGTCTTGATGGTTAATTCTGTACATCCTGAATGTGAAATATGTCTTAGGTAAAAAAGCTGGCATCAAATGTTCTGAGGGTTTTTAAACACTAAAACTTCCAACTGGATTGAAGTTGTTGTTGCCAGAATATGTTTGAGTTATGGGAAATCTGGGCTGCGGTTCAACTGAGGTTTTTTTCTTGGCTTTTTTTTTTTGGGCGGTAGATCAGGAGAGGATGTGAAACAGCTTTCCCAGAGTCTTTATGGTATATAAGGTACAAGACTTTGGTCAGACTACCAAAACAATGTCAATTTGCGTCACTGTACCACAAACAGAAGGCCATTTGCCACAAATACATCTGTAATTCTATATTACACCTGTCTTGACCTAAATTGGGTTACCTAATGTCCTCTTTAGCTCAATATGTTACCCAATTTCCTCTGTAGCTCAATGGGTTACCTAATGTCTTCTATAGCTCAATAGGTTACCTAATGTCCTCTTTAGCTCAATATGTTACCCAATTTCCTCTGTAGCTCAATGGATTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGGTTACCTAATGTCCTCTGTAGCTCAATAGTTAACCTAATGTCCTCTGTAGCTCAATAGGTCACCTAATGTCCTCTGTAGCTCAATAGTTAACCTAATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509442 False 1170 mRNA 0.50 9 37322673 37331174
TU2493228 True 998 lncRNA 0.38 2 37322235 37323319

Neighbor

gene id symbol gene type direction distance location
LOC118936394 NA coding downstream 3856 37317863 ~ 37318817 (-)
LOC100136950 m-csfr coding downstream 8511 37304199 ~ 37314162 (-)
LOC110510188 LOC106563734 coding downstream 26132 37284368 ~ 37296541 (-)
LOC110510193 LOC106563731 coding downstream 81510 37234793 ~ 37241163 (-)
LOC110510195 LOC106563727 coding downstream 249910 37059194 ~ 37072763 (-)
LOC110510185 LOC106563738 coding upstream 53147 37384321 ~ 37388247 (-)
LOC110509383 LOC106563737 coding upstream 73773 37404947 ~ 37407196 (-)
nsrp1 nsrp1 coding upstream 160709 37482837 ~ 37498898 (-)
LOC118945348 NA coding upstream 221397 37552571 ~ 37565815 (-)
LOC110510233 LOC106563796 coding upstream 299595 37627521 ~ 37656552 (-)
G2181205 NA non-coding downstream 2373 37319996 ~ 37320300 (-)
G2181204 NA non-coding downstream 2757 37319703 ~ 37319916 (-)
G2181201 NA non-coding downstream 6399 37315995 ~ 37316274 (-)
G2181200 NA non-coding downstream 6933 37315258 ~ 37315740 (-)
G2181184 NA non-coding downstream 43086 37279295 ~ 37279587 (-)
G2181216 NA non-coding upstream 5090 37336264 ~ 37336495 (-)
G2181221 NA non-coding upstream 17586 37348760 ~ 37349040 (-)
G2181222 NA non-coding upstream 18005 37349179 ~ 37349414 (-)
G2181223 NA non-coding upstream 19592 37350766 ~ 37473048 (-)
G2181230 LOC106563735 non-coding upstream 20818 37351992 ~ 37356081 (-)
G2181143 LOC100136155 other downstream 88774 37232869 ~ 37233899 (-)
G2180587 NA other downstream 339964 36981957 ~ 36982709 (-)
LOC110509384 NA other downstream 342912 36975909 ~ 36979761 (-)
G2180120 NA other downstream 815553 36506540 ~ 36507120 (-)
G2181304 NA other upstream 205491 37536665 ~ 37538240 (-)
G2181315 NA other upstream 449408 37780582 ~ 37787673 (-)
LOC110509458 LOC106592337 other upstream 829503 38160179 ~ 38237799 (-)
G2182508 NA other upstream 1583432 38914606 ~ 38914926 (-)
G2181210 NA non-coding upstream 3134 37326453 ~ 37326782 (-)

Expression


Co-expression Network