XLOC_000404 (arl6)


Basic Information

Item Value
gene id XLOC_000404
gene name arl6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34203817 ~ 34234056 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000690
aacctgCAACTCTGATATTGTCCACCAGATGATGCTATTAGGTAAACATTACATGTGAGTGGATGGAAAAAGCGTCATCGGTCTCCTAGCAGCGGTGTGTGTGAGAGCGTGAACTACACGATTTCCCAGAAGAGCCCCGTCCAACTAAGCAAATGGGGCTTTTTGACAAGCTTGCAGGATGGCTGGGCCTAAAGAAGAAGGAAGTAAACGTGCTGTGTTTGGGTCTGGACAACAGTGGAAAAACTACCAtcatcaaccagctaaaaccatccaaTGCTCAGGCTCAAGACATTGTCCCAACTATAGGATTCAGCATAGAAAAGTTTAAGACCTCAAGTCTTTCTTTCACAGTGTTTGACATGTCAGGACAGGGAAGATACAGAAATCTGTGGGAACACTATTACAAggaGGGGCAGGCCATCATATTTGTGATTGACAGTGGAGATAAACTTAGAATGGTAGTGGCAAAAGAGGAACTGGATACCCTTTTGAATCACCCTGATATTAAGCACAGGAGAATACCTTTACTCTTTTTCGCCAACAAGATGGACCTCAGGGATGCTTTGTCAGCAGTAAAGGTCTCCCAGCTTTTGTGTCTGGAAAACATTAAGGACAAGCCATGGCATATCTGtgctaGTGATGCAGTGAAAGGAGAAGGTCTTCTAGAGGGTGTAGACTGGCTGCAAGAACAAATTGCACTATCAAATCAGAGCGATGAAAACGTAAAACCctcctga
>TCONS_00000691
GTAAACATTACATGTGAGTGGATGGAAAAAGCGTCATCGGTCTCCTAGCAGCGGTGTGTGTGAGAGCGTGAACTACACGATTTCCCAGAAGAGCCCCGTCCAACTAAGCAAATGGGGCTTTTTGACAAGCTTGCAGGATGGCTGGGCCTAAAGAAGAAGGAAGTAAACGTGCTGTGTTTGGGTCTGGACAACAGTGGAAAAACTACCAtcatcaaccagctaaaaccatccaaTGCTCAGGCTCAAGACATTGTCCCAACTATAGGATTCAGCATAGAAAAGTTTAAGACCTCAAGTCTTTCTTTCACAGTGTTTGACATGTCAGGACAGGGAAGATACAGAAATCTGTGGGAACACTATTACAAggaGGGGCAGGCCATCATATTTGTGATTGACAGTGGAGATAAACTTAGAATGGTAGTGGCAAAAGAGGAACTGGATACCCTTTTGAATCACCCTGATATTAAGCACAGGAGAATACCTTTACTCTTTTTCGCCAACAAGATGGACCTCAGGGATGCTTTGTCAGCAGTAAAGGTCTCCCAGCTTTTGTGTCTGGAAAACATTAAGGACAAGCCATGGCATATCTGtgctaGTGATGCAGTGAAAGGAGAAGGTCTTCTAGAGGGTGTAGACTGGCTGCAAGATCAAATCAGAGCGATGAAAACGTAAAACCctcctgaaagaaaaaaaataaaataacctccAAGGTCACCTGTTACAATGGCAAAACCTGACAAAACCAGATCTTCAGCTTTGGGCACAATGACAGTGTGTGTGAATTTAAAATCAGTTCAGTTTTACTGTAATAAAGACACTGTGTAGCTTGATTATGACCCTATTTGCACCAACTGTCAATGTCTCAATTGATCACAAATGGTTAGTTGAGAAATCTTTGTAAATCTCATCACAAaagttattgattattatttattagcagGTTCTCTGTTGTTTAGCATATATAAGCACACTAAAGAGttaacaataaaaatgcatttctgACTACCACCTCTAAAAAAAATGTTCGGTACCCTTTTTATCCAGTGTGGTTTTATCCAGGGGCTGTTCACAATTGGCATCTTTTGTtcgtgcaagttcgttatttccaaagTAGGCGATGTACTTTGCTAGTCCAGGCACACCGCCttaaaaacatcttaacttttcagaatgctgctAGTgtacatgacaagaactgaccaatcagcttcttACTTTGTATAGAAAAAATCACATTTCTGTAGtttaattacctcagacaaacacagaacacacacacactgcagcactttttaattttctcAATAAATAatacttgtatcagagctgcagcaatgttttgtcagttcgTCATCCCAGCAACGGCAGATGGACATTGAAACGCGAGTGCAAAACATGTTTGAAAATAGTGAAGGAAGTGATGTGCCTCACGCTTTCCATGCAATTTTAGACACAAAAGATGAATAGCCCCTAACTCAGTTCTGACATGTTTTACTCATCTGAGCTGGGGTGTAAATTGGTCTGTGACACTATATAAATGTTCCATAACATCCTAAAAATATGAACGCTATACGTCTTGCCTACCAATGCTGCAGAAATGTGTTTCTCGACTTCATTTTTGTGGGCCCCAACACTGCACATTTTGCACGTCTTCTTAATTATACACAACTGATTTAACTCATTAGCTCATTGGAGACTCCAAGAGCTGAAATAGTTGTGTCGGGTTCATAAGACATGTAAACTGTACCGTTTTAGGGGGGGTCTCCAGAAACATGAATGAAAAGCATTTGTGTAGAGTGATTCTGCTGAGAGAGCAAGATGAATTGTAATCACCTATgaattgatttaaaatattagcagactaatcttttttttttttttatcttagctATGTGCGtttataaatcaattaaaattacTTATGAGCACTGTTCATTTCATCGCTCTAGAATGTAAAATCAGTCAAAGCTTGTTACTGTAGTAATGTTATGTACAGTAGTAATATTTACTTACTATTTTGCTATGATAAACTATTCATGCATTGCACGCATGTTGCCTCTGAACCGTTTAATTATAACAGTGTTGTtcttttgttgtagttttttttttttttttttttttttagtgtgacTGCTTAAACTGTCAAAAAGGACACATTCCTCTTTGTTctggatttatttttttcccaatatcaGGTGTGTTTTAAATGGAATGGTTGatgcattttttgtcattttatttcgattttacaaatgtatttattttctaaacATTTCACTGAAATTTTGCAGTTCCTTTCTTGCTGTTTTTATTCAACATTAAGGGTTCTTGTAATAGCACATGTAAAGAATAAACAGAAATGTTGGGGCTTA
>TCONS_00000692
tatgTAAATTTGAACATTGTACAAATGATGCTGatcaaatgtaaattttaaaatatatttatgacaaCAATTCACAATATTactcattttgtatttattttgttttattcaataaatatggCTTTGATGATCATCAACTTCTTTCATAACAAAggtattagcccccctttgattttttattatttttttaaaacagagtaaAGAAAATCTTCACAGTATATGTTAAGatttcttgagaaagtcttgcttgttttattttggctagaataaaagctatttttatttttttaaagccatattaaggtcaaaattatcagccctttcaagctaattctgacttcactgtATATCCACTCAAcataattaggctaactaggctggttcgggtaattaggaaagttattgtataacaatggtttgttctgtagactatagagaaaaatatatagcttaaaggggctaataatattgtctttaaaatggttctttaaaaaataaaaaatgcttttattgtagctgaaataaaacaaatgactttctacaaaagaaaaaaatattgtcagacatactgtaaaaatactgtatataagcaATCATTATAAAGTagtatattttgatttaaaaaatgtcgGAATTAGCTGGCATTCATATTTAAATCAAAGCATAACTATTGATAAGGATAATTTATAATACGTAATTgttatgatttatattattatttttttatattatcaatCTGTTCCCCTCAGCACTTACTGCATTTTGAAACCTGTAAAAACAAAGATGTTTCTGTTGTCCCTAGTGTTTCACAGCCATATGATGCATCTAATGAATAATCTAATTGAGCTTGTCTTTGATGTGATCTCTTTGCAGAAGAGCCCCGTCCAACTAAGCAAATGGGGCTTTTTGACAAGCTTGCAGGATGGCTGGGCCTAAAGAAGAAGGAAGTAAACGTGCTGTGTTTGGGTCTGGACAACAGTGGAAAAACTACCAtcatcaaccagctaaaaccatccaaTGCTCAGGCTCAAGACATTGTCCCAACTATAGGATTCAGCATAGAAAAGTTTAAGACCTCAAGTCTTTCTTTCACAGTGTTTGACATGTCAGGACAGGGAAGATACAGAAATCTGTGGGAACACTATTACAAggaGGGGCAGGCCATCATATTTGTGATTGACAGTGGAGATAAACTTAGAATGGTAGTGGCAAAAGAGGAACTGGATACCCTTTTGAATCACCCTGATATTAAGCACAGGAGAATACCTTTACTCTTTTTCGCCAACAAGATGGACCTCAGGGATGCTTTGTCAGCAGTAAAGGTCTCCCAGCTTTTGTGTCTGGAAAACATTAAGGACAAGCCATGGCATATCTGtgctaGTGATGCAGTGAAAGGAGAAGGTCTTCTAGAGGGTGTAGACTGGCTGCAAGATCAAATCAGAGCGATGAAAACGTAA
>TCONS_00003084
tAGCCCAGATCTTCAGCTTTGGGCACAATGACAGTGTGTGTGAATTTAAAATCAGTTCAGTTTTACTGTAATAAAGACACTGTGTAGCTTGATTATGACCCTATTTGCACCAACTGTCAATGTCTCAATTGATCACAAATGGTTAGTTGAGAAATCTTTGTAAATCTCATCACAAaagttattgattattatttattagcagGTTCTCTGTTGTTTAGCATATATAAGCACACTAAAGAGttaacaataaaaatgcatttctgACTACCACCTCTAAAAAAAATGTTCGGTACCCTTTTTATCCAGTGTGGTTTTATCCAGGGGCTGTTCACAATTGGCATCTTTTGTtcgtgcaagttcgttatttccaaagTAGGCGATGTACTTTGCTAGTCCAGGCACACCGCCttaaaaacatcttaacttttcagaatgctgctAGTgtacatgacaagaactgaccaatcagcttcttACTTTGTATAGAAAAAATCACATTTCTGTAGtttaattacctcagacaaacacagaacacacacacactgcagcactttttaattttctcAATAAATAatacttgtatcagagctgcagcaatgttttgtcagttcgTCATCCCAGCAACGGCAGATGGACATTGAAACGCGAGTGCAAAACATGTTTGAAAATAGTGAAGGAAGTGATGTGCCTCACGCTTTCCATGCAATTTTAGACACAAAAGATGAATAGCCCCTAACTCAGTTCTGACATGTTTTACTCATCTGAGCTGGGGTGTAAATTGGTCTGTGACACTATATAAATGTTCCATAACATCCTAAAAATATGAACGCTATACGTCTTGCCTACCAATGCTGCAGAAATGTGTTTCTCGACTTCATTTTTGTGGGCCCCAACACTGCACATTTTGCACGTCTTCTTAATTATACACAACTGATTTAACTCATTAGCTCATTGGAGACTCCAAGAGCTGAAATAGTTGTGTCGGGTTCATAAGACATGTAAACTGTACCGTTTTAGGGGGGGTCTCCAGAAACATGAATGAAAAGCATTTGTGTAGAGTGATTCTGCTGAGAGAGCAAGATGAATTGTAATCACCTATgaattgatttaaaatattagcagactaatcttttttttttttttatcttagctATGTGCGtttataaatcaattaaaattacTTATGAGCACTGTTCATTTCATCGCTCTAGAATGTAAAATCAGTCAAAGCTTGTTACTGTAGTAATGTTATGTACAGTAGTAATATTTACTTACTATTTTGCTATGATAAACTATTCATGCATTGCACGCATGTTGCCTCTGAACCGTTTAATTATAACAGTGTTGTtcttttgttgtagttttttttttttttttttttttttagtgtgacTGCTTAAACTGTCAAAAAGGACACATTCCTCTTTGTTctggatttatttttttcccaatatcaGGTGTGTTTTAAATGGAATGGTTGatgcattttttgtcattttatttcgattttacaaatgtatttattttctaaacATTTCACTGAAATTTTGCAGTTCCTTTCTTGCTGTTTTTATTCAACATTAAGGGTTCTTGTAATAGCACATGTAAAGAATAAACAGAAATGTTGGGGCTTAGATTCTGTGTGACGTGgatctttttattatttgttctcGCTCACACTCTGTTCTGTATAGACACAAATATTTACTCACAAGCATAAATACAAAGACACCTGTTTCGAGAAAAGTGcat
>TCONS_00002851
aaatattaaataccatTTCTACTCTTGTGCTCTGTTTTATCCATAGAACAAATTGCACTGTAAGTACTGAAGCTGAAATTCCCAGATGTGTTGTGATTGTTGTTTATTAATAGAGTTTCTTTAGGAACTCGCATCTTGGCTGTATGTATTCTTGCACCATTTAATGTCTCTTTGGCCTTTTGggcaattttcaaaagcaaataaaCCTTTTTGAGGTTTTTTAAAGATTAGATACAGCCCAAATTGATGCAAAAAATTTTCAGACCCCTATTTTTCTTGATGTTTGAGGTGTATTTGAAGATTCTGATAAGTGTAGATTATAAAAGTTTACAGATGTCTGTCGTCTTACACTCAATAGTTTATTGTTTGTCCCATCCCCACCTTCTCccc

Function

symbol description
arl6 Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0050896 response to stimulus biological_process
GO:0032402 melanosome transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007601 visual perception biological_process
GO:0061512 protein localization to cilium biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0033339 pectoral fin development biological_process
GO:0042995 cell projection cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-041219-2 Predicted to enable GTP binding activity. Involved in cilium assembly. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pectoral fin development. Predicted to be located in ciliary membrane and cytoskeleton. Predicted to be active in axoneme. Is expressed in adipose tissue; brain; eye; heart; and retina. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 1; Bardet-Biedl syndrome 3; and retinitis pigmentosa 55. Orthologous to human ARL6 (ADP ribosylation factor like GTPase 6).

Ensembl:

ensembl_id ENSDARG00000032056

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000690 False 737 mRNA 0.44 9 34203817 34232249
TCONS_00000691 False 2372 mRNA 0.37 8 34203858 34233938
TCONS_00000692 False 1457 mRNA 0.33 7 34224360 34232238
TCONS_00003084 False 1752 lncRNA 0.35 2 34231603 34234056
TCONS_00002851 True 390 lncRNA 0.34 1 34231738 34232127

Neighbor

gene id symbol gene type direction distance location
XLOC_000402 epha6 coding upstream 2622 33969015 ~ 34201195 (+)
XLOC_000403 dre-mir-734 coding upstream 80845 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 coding upstream 236544 33967157 ~ 33967273 (+)
XLOC_000400 CU915566.1 coding upstream 468683 33735018 ~ 33735134 (+)
XLOC_000399 nsun3 coding upstream 481037 33697170 ~ 33722780 (+)
XLOC_000405 slc5a7a coding downstream 9594 34243650 ~ 34261993 (+)
XLOC_000406 kctd12.2 coding downstream 61869 34295925 ~ 34297403 (+)
XLOC_000407 CR848003.1 coding downstream 166184 34400240 ~ 34400354 (+)
XLOC_000408 NA coding downstream 216603 34450659 ~ 34454447 (+)
XLOC_000409 klf12a coding downstream 262799 34496855 ~ 34558804 (+)
XLOC_000394 NA non-coding upstream 684994 33517802 ~ 33518823 (+)
XLOC_000390 BX322647.1 non-coding upstream 987099 33215241 ~ 33216718 (+)
XLOC_000414 NA non-coding downstream 623312 34857368 ~ 34861057 (+)
XLOC_000415 NA non-coding downstream 800238 35034294 ~ 35093512 (+)
XLOC_000421 NA non-coding downstream 1662336 35896392 ~ 35898437 (+)

Expression


Co-expression Network