LOC110510185 (LOC106563738)


Basic Information

Item Value
gene id LOC110510185
gene name LOC106563738
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37384321 ~ 37388247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591558.2
TCATGACTAGTTGGCCATTTCCCCATAGCAGGAAACAGAACTGTCTGAGCGTAATGACAACTACACATTCATTTCATGCCAAACTTTCTAGTTTACAAACATGTCCTCACCCCATACTCTGAGAGTTTTAACATCTACTGGTGGGCTTCCCATGTGGATGATGCTTCTTCACCTCGACATAAGCTATGGTGTGAGATCTTTCTAAATGGTTCACTGAAGTTTCAAGAAGGACTGAAAAGAGACAGTGGAAATTATACTGTTCAACAATACAGTGAAAATGGAGGCTGTTTATCCGAGCAGCACATTGAGCTCAGTATTCTAGAACCTGTTTCCAAACCAAAGGTGAGAACCTCCTGTACTTTTGATGGGAGAGTTGTTCTGACCTGCTCTGTTGATAAAGGAGACAGAGTTGTGATGATCTGGACCGAGCAGCCATTTGCCTGGACAGGGTCCAATCAGACCCTGGGCTCAGGTCCTGTTCTATTCCTGGACAGCCATACGCCTGGAAACCTGACCTGTGTGGCAATGAACGAAATAAGTGAGGAAGGCTTCAGCCCAGTTGTCCCAACATGCAGAGGTCACAGGTCAGCTGTGGCTGCATTTGGTCTCTTTGCATTTGCACTGACGACACTGGCCGTCGCCATTCTACATTTGAAGAAGAGGCGTCAGAAAAAGAGAAAAGGTCAAAGTCAGACTGAATATGTGGAGGAGAACAACTACATTGAGATGAGTGGGGATTTATGCAACAAATGGCCACAGGAGGAGACCACAATCCACCCGGACCAAGACACCTCCCATTACGAATTCTGCAGACCTCTTGCATCTGCTTCCAGCCAGAGAAAGGGACGACTATCACTGGAGTTGAATGATATCTATGTATGAAGAACAATGTGTTAATGGCATTTCAATAGCATCGATTTGTTTTCCAATGTGAAGTATGCACCTACGCACCATAATTACTGATCATTTTTTACAATTCATTATGGTGTTTTTCTGCGCTAGATGTAATTTTGTTGCATAGTCGTAGAGCCTAGAGAAGCGACATATAGGGCATTATTTCACCTGTATTTTGATATTGTATCATACCCGTACTGACTTCATTATCAGACTGGACCACTAGGTGGAAGCATTACAGTATGATAAAGAAACAGGGTGACGAGAGGTGAGAAGAAACATCACAGGATTACTGTCATTACATCAATAGTTTGTTTCAAAACATATGGACGCTGCTGGGACGACTGTAAATTATTCCATTTCAAACTGTTCTAGTTATTCTTGTCTAATGTTTGTTTAACTTCAAAATGTCCATATAAAAgactcctgagtggcacagcggtctaaggcactgtttctcagtgctagaggtgtcactacagaccctggtttgattccaggctgtatcacaaccggctgttattgggagtcccatagggtggtgcacaattggcacagcctTGTCTGGGTtaggatttggccggggtaggctgtcattgtcaataagaatttgttcttaactgacttttctAGATAAATAAATAGTATAGCCAGGGTTCTCTGTTTCTGGatagctaccctcctgtaggttttcaatccaaATCTCActtagcacacctgattctactaattagtTGGTTGATAATcagaatcaggttagttacaactggggt
>XM_021591557.2
TTTCATGACTAGTTGGCCATTTCCCCATAGCAGGAAACAGAACTGTCTGAGCGTAATGACAACTACACATTCATTTCATGCCAAACTTTCTAGTTTACAAACATGTCCTCACCCCATACTCTGAGAGTTTTAACATCTACTGGTGGGCTTCCCATGTGGATGATGCTTCTTCACCTCGACATAAGCTATGTTGTTGCAGAAGACATCAGAGTAGTTGGACGTGTAGGAAACTCCATATTCCTTCACCCTAAAATGCACTTACACGCCAAGATCTCTGACATAAGATGGAAACATGATAATACAGATATGTTAATAGCTAGAAATGGTACGCTTGTTAATTTAATGGATAGGTGTGAGATCTTTCTAAATGGTTCACTGAAGTTTCAAGAAGGACTGAAAAGAGACAGTGGAAATTATACTGTTCAACAATACAGTGAAAATGGAGGCTGTTTATCCGAGCAGCACATTGAGCTCAGTATTCTAGAACCTGTTTCCAAACCAAAGGTGAGAACCTCCTGTACTTTTGATGGGAGAGTTGTTCTGACCTGCTCTGTTGATAAAGGAGACAGAGTTGTGATGATCTGGACCGAGCAGCCATTTGCCTGGACAGGGTCCAATCAGACCCTGGGCTCAGGTCCTGTTCTATTCCTGGACAGCCATACGCCTGGAAACCTGACCTGTGTGGCAATGAACGAAATAAGTGAGGAAGGCTTCAGCCCAGTTGTCCCAACATGCAGAGGTCACAGGTCAGCTGTGGCTGCATTTGGTCTCTTTGCATTTGCACTGACGACACTGGCCGTCGCCATTCTACATTTGAAGAAGAGGCGTCAGAAAAAGAGAAAAGGTCAAAGTCAGACTGAATATGTGGAGGAGAACAACTACATTGAGATGAGTGGGGATTTATGCAACAAATGGCCACAGGAGGAGACCACAATCCACCCGGACCAAGACACCTCCCATTACGAATTCTGCAGACCTCTTGCATCTGCTTCCAGCCAGAGAAAGGGACGACTATCACTGGAGTTGAATGATATCTATGTATGAAGAACAATGTGTTAATGGCATTTCAATAGCATCGATTTGTTTTCCAATGTGAAGTATGCACCTACGCACCATAATTACTGATCATTTTTTACAATTCATTATGGTGTTTTTCTGCGCTAGATGTAATTTTGTTGCATAGTCGTAGAGCCTAGAGAAGCGACATATAGGGCATTATTTCACCTGTATTTTGATATTGTATCATACCCGTACTGACTTCATTATCAGACTGGACCACTAGGTGGAAGCATTACAGTATGATAAAGAAACAGGGTGACGAGAGGTGAGAAGAAACATCACAGGATTACTGTCATTACATCAATAGTTTGTTTCAAAACATATGGACGCTGCTGGGACGACTGTAAATTATTCCATTTCAAACTGTTCTAGTTATTCTTGTCTAATGTTTGTTTAACTTCAAAATGTCCATATAAAAgactcctgagtggcacagcggtctaaggcactgtttctcagtgctagaggtgtcactacagaccctggtttgattccaggctgtatcacaaccggctgttattgggagtcccatagggtggtgcacaattggcacagcctTGTCTGGGTtaggatttggccggggtaggctgtcattgtcaataagaatttgttcttaactgacttttctAGATAAATAAATAGTATAGCCAGGGTTCTCTGTTTCTGGatagctaccctcctgtaggttttcaatccaaATCTCActtagcacacctgattctactaattagtTGGTTGATAATcagaatcaggttagttacaactggggt

Function

NR:

description
T-cell surface antigen CD2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591558.2 False 1667 mRNA 0.43 6 37384321 37388245
XM_021591557.2 True 1829 mRNA 0.42 6 37384321 37388247

Neighbor

gene id symbol gene type direction distance location
LOC110509442 NA coding downstream 53147 37322235 ~ 37331174 (-)
LOC118936394 NA coding downstream 65504 37317863 ~ 37318817 (-)
LOC100136950 m-csfr coding downstream 70159 37304199 ~ 37314162 (-)
LOC110510188 LOC106563734 coding downstream 87780 37284368 ~ 37296541 (-)
LOC110510193 LOC106563731 coding downstream 143158 37234793 ~ 37241163 (-)
LOC110509383 LOC106563737 coding upstream 16700 37404947 ~ 37407196 (-)
nsrp1 nsrp1 coding upstream 103636 37482837 ~ 37498898 (-)
LOC118945348 NA coding upstream 164324 37552571 ~ 37565815 (-)
LOC110510233 LOC106563796 coding upstream 242522 37627521 ~ 37656552 (-)
LOC118945268 NA coding upstream 276906 37665153 ~ 37668711 (-)
G2181230 LOC106563735 non-coding downstream 28240 37351992 ~ 37356081 (-)
G2181222 NA non-coding downstream 34907 37349179 ~ 37349414 (-)
G2181221 NA non-coding downstream 35281 37348760 ~ 37349040 (-)
G2181216 NA non-coding downstream 47826 37336264 ~ 37336495 (-)
G2181210 NA non-coding downstream 57539 37326453 ~ 37326782 (-)
G2181225 NA non-coding upstream 40978 37429225 ~ 37434153 (-)
G2181262 NA non-coding upstream 41779 37430026 ~ 37430889 (-)
G2181227 NA non-coding upstream 47195 37435442 ~ 37438927 (-)
G2181228 NA non-coding upstream 60998 37449245 ~ 37449823 (-)
G2181224 NA non-coding upstream 63550 37451797 ~ 37455476 (-)
G2181143 LOC100136155 other downstream 150422 37232869 ~ 37233899 (-)
G2180587 NA other downstream 401612 36981957 ~ 36982709 (-)
LOC110509384 NA other downstream 404560 36975909 ~ 36979761 (-)
G2180120 NA other downstream 877201 36506540 ~ 36507120 (-)
G2181304 NA other upstream 148418 37536665 ~ 37538240 (-)
G2181315 NA other upstream 392335 37780582 ~ 37787673 (-)
LOC110509458 LOC106592337 other upstream 772430 38160179 ~ 38237799 (-)
G2182508 NA other upstream 1526359 38914606 ~ 38914926 (-)

Expression


Co-expression Network