nsrp1 (nsrp1)


Basic Information

Item Value
gene id nsrp1
gene name nsrp1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37482837 ~ 37498898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967585.1
CAGTCACTCAGGAGAGACAATGGAAGAGTCAGGATGGAATCAACGCCTCGCCTTTAATCACAGGGTAGCTCTCTGAGCACACTGATCTCTGCAGAGATAATGACAATCAGAGAAAGTGTGAAAGCGTGGGTATAAGTGGTATGGTATTACTAAGGAGAACTGGCATGGTGGTGGAGAGTCAACAACCCATGAAATTGTTATGGTTTTACGGCTTAATAGGGGCAGGATCAGAAGGCAGGGTTCGCTTGCCAACGAATCTGCCGCAGCGGTTCAGAGATATTTCAAGGAGTAAGATGGCGGCACCTAGTAAACAGTACGGCCTGATCATACCCCAGAAGAGAGCGTCTAAGACAGTCACCTTGCCCAGGCCCTCAGTGTTTGGGGATGACTCTGATGAAGAGACCTCGGTTGGGGAGAGTTTGCAGAAGGAGGCTCTGAAGAAGAGGATGATGAAACAGACACGTCTGGAGATGCAGAAGGCTCTAGAGCAGGACAGCAGTGTGTATGACTACGATGGTGTCTATGATGACATGCAGAAACAGAGGCTGGAGAGCAGCAAGAAAATGCTGGGAGGAACCGACAGGAAGccAAAATACATCAACCAGCTGCTACAAGCGGTGGAGGACAGGAAGAAGGAGCAGGAacggagagatgagaggaagattcagaaggagagagaggcggagggagAGCAGTTTGCAGACAAGGAGGCTTACGTCACctcagcctacagacagaaactcaaggagagacaggaggagctGGAAAAAGAAAAGCGAGAGGCAGCGATGGAGGcTGCTCTGGATGTGAAGAAGCAGAAAGACCTGAGTGGTTTCTACAGACACCTGCTGAACCAGACCGTAGGAGAGGAGGCCATACCAGACCGCTCTGTACCGAGGGATCAGAGTACAAAAGAAGTCAAGACAGAAGCGCCATCCCCACCGTCTTCACCTCCCTCACAAGACCACGTCCCCAGTTCCCATAGTGACAGCGAGGAGGGGCAGGATCAGAAGGCAGGGTTCAGTAAGCCGGCCCCTTGTGCCAAACGCCACTACAGACAGAGGTCCCCTTCCTCtgggagtggagaagaggagcgagagaaggatagagagagagaaaagaagagacataaagagagagaccgagaccaaggaagggatagagagagggtcagagagagagacagggaggacaggcatggtggatggagagatgagaaggatggaagaaaggagagggatagagacagagaggaggacaggagcagGGGGAGgcgggataaagagagagaggagagacacgggaagagagaaaggagcccgaaagacagagagaaggagaacggggagaaagagaaacagagggagctAGACAAAGacaaggggagagaaagggacaagggcagggagaaagagaggaataggGATGAAGAAAAGAAGACTATAAAAACCGACGGAAAGGATgaaaagaaggagggagagggttcAGCGAagaaggggaaggagggagaggggtcagagaggaaggggaaggagggagaggggtcagagaaggggaaggagggtgggtcagagaaggggaaggagagtGATTCAGagaagaagggaaaggagagagaagaggagagtaaaGTGAGTAAGTTTGTCAAGCGCAGCAGTGAGCAGACCGTGACCTCAGCCAGAGACAGATACCTGGCCAGACAGATGGCACGCTCAGCCACCAAGACGTACATAGAGAAGGAGGAggactgaacacacacaaacgatgACAGCTGTGACTGTGTGATGACAGAGGGTGTCCGATGAACTGAGACACGTCAACAGATGTGTGTGAACTTCTTTCTCTAATACACAGCACTTGACGGACCCACCAAATTAGAGTGGGGTCTCATGGTTCTACTGTCTGGGGAGAAAGATGGAATGGTAGAGAGTGATTTAAATGAATGAATGCAGGACTTGAGTTAAGTGAGAGGGTGAATAAGTGATGAAAAATGTAGTGTGAGTGAGGTGCCCCACACCAGCGAACTATGTTTTTGTTGAATatttctgttctattccatttttttttttttctgatggacagaaccgTACTTCCTGTTTATGTTGTTAATAAATGTCAACATATGGCTGGTG
>TU2493358
gaaggggaaggagagtGATTCAGagaagaagggaaaggagagtaaaGTGAGTAAGTTTGTCAAGCGCAGCAGTGAGCAGACCGTGACCTCAGCCAGAGACAGATACCTGGCCAGACAGATGGCACGCTCAGCCACCAAGACGTACATAGAGAAGGAGGAggactgaacacacacaaacgatgACAGCTGTGACTGTGTGATGACAGAGGGTGTCCGATGAACTGAGACACGTCAACAGATGTGTGTGAACTTCTTTCTCTAATACACAGCACTTGACGGACCCACCAAATTAGAGTGGGGTCTCATGGTTCTACTGTCTGGGGAGAAAGATGGAATGGTAGAGAGTGATTTAAATGAATGAATGCAGGACTTGAGTTAAGTGAGAGGGTGAATAAGTGATGAAAAATGTAGTGTGAGTGAGGTGCCCCACACCAGCGAACTATGTTTTTGTTGAATatttctgttctattccatttttttttttttctgatggacagaaccgTACTTCCTGTTTATGTTGTTAATAAATGTCAACATATGGCTGGTGTATTGGCGCTCATGTATTCACTATTTATCTGTCATACCGTGAAAGTTAATATGGGCTATTCCTGGGGCAGCTGTAATGACCGTTTAACATAGTGTACTGTACCCAATTGCTTTACATACCCATTCATAATTG
>TU2493350
gaaggggaaggagagtGATTCAGagaagaagggaaaggagagtaaaGTGAGTAAGTTTGTCAAGCGCAGCAGTGAGCAGACCGTGACCTCAGCCAGAGACAGATACCTGGCCAGACAGATGGCACGCTCAGCCACCAAGACGTACATAGAGAAGGAGGAggactgaacacacacaaacgatgACAGCTGTGACTGTGTGATGACAGAGGGTGTCCGATGAACTGAGACACGTCAACAGATGTGTGTGAACTTCTTTCTCTAATACACAGCACTTGACGGACCCACCAAATTAGAGTGGGGTCTCATGGTTCTACTGTCTGGGGAGAAAGATGGAATGGTAGAGAGTGATTTAAATGAATGAATGCAGGACTTGAGTTAAGTGAGAGGGTGAATAAGTGATGAAAAATGTAGTGTGAGTGAGGTGCCCCACACCAGCGAACTATGTTTTTGTTGAATatttctgttctattccatttttttttttttctgatggacagaaccgTACTTCCTGTTTATGTTGTTAATAAATGTCAACATATGGCTGGTGT
>TU2493359
gaaggggaaggagagtGATTCAGagaagaagggaaaggagagagaagaggagagtaaaGTGAGTAAGTTTGTCAAGCGCAGCAGTGAGCAGACCGTGACCTCAGCCAGAGACAGATACCTGGCCAGACAGATGGCACGCTCAGCCACCAAGACGTACATAGAGAAGGAGGAggactgaacacacacaaacgatgACAGCTGTGACTGTGTGATGACAGAGGGTGTCCGATGAACTGAGACACGTCAACAGATGTGTGTGAACTTCTTTCTCTAATACACAGCACTTGACGGACCCACCAAATTAGAGTGGGGTCTCATGGTTCTACTGTCTGGGGAGAAAGATGGAATGGTAGAGAGTGATTTAAATGAATGAATGCAGGACTTGAGTTAAGTGAGAGGGTGAATAAGTGATGAAAAATGTAGTGTGAGTGAGGTGCCCCACACCAGCGAACTATGTTTTTGTTGAATatttctgttctattccattttttttttctgatggacagaaccgTACTTCCTGTTTATGTTGTTAATAAATGTCAACATATGGCTGGTGT
>TU2493346
agagagagaggcggagggagAGCAGTTTGCAGACAAGGAGGCTTACGTCACctcagcctacagacagaaactcaaggagagacaggaggagctGGAAAAAGAAAAGCGAGAGGCAGCGATGGAGGcTGCTCTGGATGTGAAGAAGCAGAAAGACCTGAGTGGTTTCTACAGACACCTGCTGAACCAGACCGTAGGAGAGGAGGCCATACCAGACCGCTCTGTACCGAGGGATCAGAGTACAAAAGAAGTCAAGACAGAAGCGCCATCCCCACCGTCTTCACCTCCCTCACAAGACCACGTCCCCAGTTCCCATAGTGACAGCGAGGAGGGGCAGGATCAGAAGGCAGGGTTCAGTAAGCCGGCCCCTTGTGCCAAACGCCACTACAGACAGAGGTCCCCTTCCTCtgggagtggagaagaggagcgagagaaggatagagagagagaaaagaagagacataaagagagagaccgagaccaaggaagggatagagagagggtcagagagagagacagggaggacaggcatggtggatggagagatgagaaggatggaagaaaggagagggatagagacagagaggaggacaggagcagGGGGAGgcgggataaagagagagaggagagacacgggaagagagaaaggagcccgaaagacagagagaaggagaacggggagaaagagaaacagagggagctAGACAAAGacaaggggagagaaagggacaagggcagggagaaagagaggaataggGATGAAGAAAAGAAGACTATAAAAACCGA

Function

symbol description
nsrp1 Orthologous to human NSRP1 (nuclear speckle splicing regulatory protein 1).

NR:

description
nuclear speckle splicing regulatory protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967585.1 False 2132 mRNA 0.50 8 37491883 37498898
TU2493358 False 679 lncRNA 0.43 2 37482837 37492441
TU2493350 False 548 lncRNA 0.45 2 37482968 37492441
TU2493359 False 557 lncRNA 0.45 2 37482968 37492441
TU2493346 True 783 TUCP 0.53 3 37483648 37484650

Neighbor

gene id symbol gene type direction distance location
LOC110509383 LOC106563737 coding downstream 84687 37404947 ~ 37407196 (-)
LOC110510185 LOC106563738 coding downstream 103636 37384321 ~ 37388247 (-)
LOC110509442 NA coding downstream 160709 37322235 ~ 37331174 (-)
LOC118936394 NA coding downstream 173066 37317863 ~ 37318817 (-)
LOC100136950 m-csfr coding downstream 177721 37304199 ~ 37314162 (-)
LOC118945348 NA coding upstream 53673 37552571 ~ 37565815 (-)
LOC110510233 LOC106563796 coding upstream 131871 37627521 ~ 37656552 (-)
LOC118945268 NA coding upstream 166255 37665153 ~ 37668711 (-)
LOC110510234 LOC106563797 coding upstream 171811 37670709 ~ 37716255 (-)
LOC110510235 LOC106563798 coding upstream 230666 37729564 ~ 37737582 (-)
G2181265 NA non-coding downstream 732 37481962 ~ 37491151 (-)
G2181223 NA non-coding downstream 18835 37350766 ~ 37473048 (-)
G2181224 NA non-coding downstream 36407 37451797 ~ 37455476 (-)
G2181228 NA non-coding downstream 42060 37449245 ~ 37449823 (-)
G2181227 NA non-coding downstream 52956 37435442 ~ 37438927 (-)
G2181280 NA non-coding upstream 893 37499791 ~ 37500700 (-)
G2181284 NA non-coding upstream 4596 37503494 ~ 37503814 (-)
G2181285 NA non-coding upstream 5025 37503923 ~ 37504427 (-)
G2181301 NA non-coding upstream 33010 37531908 ~ 37532238 (-)
G2181272 NA non-coding upstream 39589 37538487 ~ 37540250 (-)
nsrp1 nsrp1 other downstream 7233 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 252090 37234793 ~ 37241163 (-)
G2181143 LOC100136155 other downstream 257984 37232869 ~ 37233899 (-)
G2180587 NA other downstream 509174 36981957 ~ 36982709 (-)
LOC110509384 NA other downstream 512122 36975909 ~ 36979761 (-)
G2181304 NA other upstream 37767 37536665 ~ 37538240 (-)
G2181315 NA other upstream 281684 37780582 ~ 37787673 (-)
LOC110509458 LOC106592337 other upstream 661779 38160179 ~ 38237799 (-)
G2182508 NA other upstream 1415708 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 1460741 38959639 ~ 38960457 (-)
G2181225 NA non-coding downstream 48684 37429225 ~ 37434153 (-)
G2180120 NA other downstream 975717 36506540 ~ 36507120 (-)
LOC110510209 LOC106563761 other downstream 887275 36499597 ~ 36596534 (-)

Expression


Co-expression Network