LOC118945348


Basic Information

Item Value
gene id LOC118945348
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37552571 ~ 37565815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968211.1
CTATAATGAACTACATTGACCTACACAATCAATTCTAGATACTTAGGGATGATTTTGACATAATTTAGCAAGCCAAGATAAAATAACCTTCTAGTAAGTCAGATAAGTTTGCTAGCCAGTCCATTCACTAATCACCAAAAATATTTTCTTTCCAACCAGGAGAACCTTCTATGGACTACGACAGCCCCGATTTTGTTCCATCAATATTTCCCCAAGGCAAACAGACAAGAAACTCAAGAAAGACGAGATGCAATAAAGCACAGTCTGACGGCAGTGCTGTTGCCATGGCAAGTCCAGACACAGAGGTCGATGTCCTTCCTGACTGTTCTGAAGTGCTGCATGGTCCTGATTGTTACCATAGTGACCAAAGCACGCTAGATCCGAAGCTGGAGGATGAAAGTCAGACTCTGGACCTGAATATCAAAGAAGAAGACGTGGATAATTTTATGTATCTAAACTATTCTGGAGTTCTGAAAGAGGAAACGTGGGAGTGTCCTCAGCCTGGGAAAGGGGGTCCTGACTGTAACCATAGCGACCTAAGCAAGCCAGATCCAAAGATGGAGGATGAAAGTCAGCTCCAGCGTCTAACTGTTAAAAtcaaaggagaagaagaggaggaaacttATGGCACTGAATGTGGCAAGACCTCTTTGTCAACAAGGAATCCGCTCACGTCCACTGGAGAGAATTCTTACCATTGCtatgactgtgggaagagtttcagtcAACATTCAAACTTAAAACagcatcagagaacacacacaaggGAGAAATCTCATAGCTGTTCTGACTGTGGAAAGAACTTCAGTCATAAGGGGAGTTTGGTATACCACCAGAGAATACATACAGGGGAGAAACCGTatagctgctctgactgtgggaaatgTTTCAGTCAAAAGGGGAGTTTGTTATACCACCAGAGAATACATACAGGGGAGAAACCGTatagctgctctgactgtgggaaaagtTTCAGGCAAAAGGGGAGTATGGTACAACATCAGAGAACACATACAGGGGAGAAATCCTatagctgctctgactgtgggaagagttttaccgCATCTTCTACTCTAAAGAACCACCAGCGTAAAACACACTAGGGAAAAGCCTTACCATTGCGCGgactgtgggaagagcttcaatcgACATCAACATTTCTCACAACATCAGAGAACAGTGTGTTGGATGCAGATTGGTTGTTTCAgatgttgtgcccaatagaaattaaaaGTAAATAATgttgtcacttttattgtaaatagaATATATTTCTAAGCACTTCTACATTAATATGGATGCGACCATGATAATTGTGAATGATGAGTTAGGCATAAATATCATGCTAACCTCTGTTGTTGTAATGGTAAGAGGCTATGTCATGGGGGTATGATATtgtttgtgcgtctaactttctcactcataatTATTCCCGATTTTTAATTCAGaactatctgtaatcatggtagcatccacattaatgtagattgtgtttagaaacatattatattcttatttacaataaaagtgactccaaaatgacaatacGTTATTtaaccattcatttctattgggggaaaaaaatctgaaacaaccaaaatAAATAACCAATGCATCCAATACGTTTGTAGAGTCACaggcttgatgtagtcattatgTGCTAGGGATATGGGACCAGATACTAagtctggccactttaatacacacacacacactgggctttTAAAacgcattcagaccccttgactttttcccacgcgttgttaccttacagccttattctgaaaatggattaaataaatacaaaatcctCAGCAATCGACACACattaccccgtaatgacaaagcgaaaacaggttttgaatttataaaaaaaaaaaacagaaataccttatttacataagtattcagaccctttgctatgagactctaaattgagctcagatgcatcctg
>XM_036968210.1
CTCACGTGGACACATTTTGGGCGGAATAAATCCTCCCGCTTCGCCTCTTCATCTGATTACCTTGAAAACAACGGTCGGACATCTTGGACGCAGTGTCCAATTCTTGAATTTATACCAGTGGTCGAATCAGCAACTAGTGCTTTGAAAACTTCCTCGGAGTATCGGCGCTCCGGTATCACGAGTCCCATCACGAAGCCTCTAGCTCGACCGAACAaagtaacataacataacatatatTTTGGTATTTCTTAGCTACTGTAGTTAGCAACAACAATGAGAAACTGCTGTGCGGTGAATTGTGCTAATCGAGCTGGTCAAGGATGGAGATTCTTCACTATACCAAGAGGATCTCATCCCTTCCAAAATAATAGAAGACGGTTGTGGCTGCAAGCCATAAAACGGGTGGATTGGGGCCCTGATGGTCTGAGGGGTGATTATAGCTTGTGTGGAGCTCATTTCATCTCTGGAGAACCTTCTATGGACTACGACAGCCCCGATTTTGTTCCATCAATATTTCCCCAAGGCAAACAGACAAGAAACTCAAGAAAGACGAGATGCAATAAAGCACAGTCTGACGGCAGTGCTGTTGCCATGGCAAGTCCAGACACAGAGGTCGATGTCCTTCCTGACTGTTCTGAAGTGCTGCATGGTCCTGATTGTTACCATAGTGACCAAAGCACGCTAGATCCGAAGCTGGAGGATGAAAGTCAGACTCTGGACCTGAATATCAAAGAAGAAGACGTGGATAATTTTATGTATCTAAACTATTCTGGAGTTCTGAAAGAGGAAACGTGGGAGTGTCCTCAGCCTGGGAAAGGGGGTCCTGACTGTAACCATAGCGACCTAAGCAAGCCAGATCCAAAGATGGAGGATGAAAGTCAGCTCCAGCGTCTAACTGTTAAAAtcaaaggagaagaagaggaggaaacttATGGCACTGAATGTGGCAAGACCTCTTTGTCAACAAGGAATCCGCTCACGTCCACTGGAGAGAATTCTTACCATTGCtatgactgtgggaagagtttcagtcAACATTCAAACTTAAAACagcatcagagaacacacacaaggGAGAAATCTCATAGCTGTTCTGACTGTGGAAAGAACTTCAGTCATAAGGGGAGTTTGGTATACCACCAGAGAATACATACAGGGGAGAAACCGTatagctgctctgactgtgggaaatgTTTCAGTCAAAAGGGGAGTTTGTTATACCACCAGAGAATACATACAGGGGAGAAACCGTatagctgctctgactgtgggaaaagtTTCAGGCAAAAGGGGAGTATGGTACAACATCAGAGAACACATACAGGGGAGAAATCCTatagctgctctgactgtgggaagagttttaccgCATCTTCTACTCTAAAGAACCACCAGCGTAAAACACACTAGGGAAAAGCCTTACCATTGCGCGgactgtgggaagagcttcaatcgACATCAACATTTCTCACAACATCAGAGAACAGTGTGTTGGATGCAGATTGGTTGTTTCAgatgttgtgcccaatagaaattaaaaGTAAATAATgttgtcacttttattgtaaatagaATATATTTCTAAGCACTTCTACATTAATATGGATGCGACCATGATAATTGTGAATGATGAGTTAGGCATAAATATCATGCTAACCTCTGTTGTTGTAATGGTAAGAGGCTATGTCATGGGGGTATGATATtgtttgtgcgtctaactttctcactcataatTATTCCCGATTTTTAATTCAGaactatctgtaatcatggtagcatccacattaatgtagattgtgtttagaaacatattatattcttatttacaataaaagtgactccaaaatgacaatacGTTATTtaaccattcatttctattgggggaaaaaaatctgaaacaaccaaaatAAATAACCAATGCATCCAATACGTTTGTAGAGTCACaggcttgatgtagtcattatgTGCTAGGGATATGGGACCAGATACTAagtctggccactttaatacacacacacacactgggctttTAAAacgcattcagaccccttgactttttcccacgcgttgttaccttacagccttattctgaaaatggattaaataaatacaaaatcctCAGCAATCGACACACattaccccgtaatgacaaagcgaaaacaggttttgaatttataaaaaaaaaaaacagaaataccttatttacataagtattcagaccctttgctatgagactctaaattgagctcagatgcatcctg

Function

NR:

description
zinc finger protein interacting with ribonucleoprotein K-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968211.1 False 1954 mRNA 0.40 4 37552571 37559554
XM_036968210.1 True 2261 mRNA 0.41 5 37552571 37565815

Neighbor

gene id symbol gene type direction distance location
nsrp1 nsrp1 coding downstream 53673 37482837 ~ 37498898 (-)
LOC110509383 LOC106563737 coding downstream 145375 37404947 ~ 37407196 (-)
LOC110510185 LOC106563738 coding downstream 164324 37384321 ~ 37388247 (-)
LOC110509442 NA coding downstream 221397 37322235 ~ 37331174 (-)
LOC118936394 NA coding downstream 233754 37317863 ~ 37318817 (-)
LOC110510233 LOC106563796 coding upstream 64954 37627521 ~ 37656552 (-)
LOC118945268 NA coding upstream 99338 37665153 ~ 37668711 (-)
LOC110510234 LOC106563797 coding upstream 104894 37670709 ~ 37716255 (-)
LOC110510235 LOC106563798 coding upstream 163749 37729564 ~ 37737582 (-)
LOC110510236 LOC106563799 coding upstream 186093 37751908 ~ 37780139 (-)
G2181272 NA non-coding downstream 12321 37538487 ~ 37540250 (-)
G2181301 NA non-coding downstream 20333 37531908 ~ 37532238 (-)
G2181285 NA non-coding downstream 48144 37503923 ~ 37504427 (-)
G2181284 NA non-coding downstream 48757 37503494 ~ 37503814 (-)
G2181280 NA non-coding downstream 51871 37499791 ~ 37500700 (-)
G2181369 NA non-coding upstream 92909 37658724 ~ 37658958 (-)
G2181312 NA non-coding upstream 99340 37665155 ~ 37670911 (-)
G2181376 NA non-coding upstream 125145 37690960 ~ 37781721 (-)
G2181304 NA other downstream 14331 37536665 ~ 37538240 (-)
LOC110510193 LOC106563731 other downstream 312778 37234793 ~ 37241163 (-)
G2181143 LOC100136155 other downstream 318672 37232869 ~ 37233899 (-)
G2180587 NA other downstream 569862 36981957 ~ 36982709 (-)
G2181315 NA other upstream 214767 37780582 ~ 37787673 (-)
LOC110509458 LOC106592337 other upstream 594862 38160179 ~ 38237799 (-)
G2182508 NA other upstream 1348791 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 1393824 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 1793376 39359191 ~ 39370231 (-)

Expression


Co-expression Network