LOC118945268


Basic Information

Item Value
gene id LOC118945268
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37665153 ~ 37668711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040359.1
atctgccacacacctagacacacacacacacacacacctagacacacacatctgtcatgcacctagacacacacaccaagacagcgTTTAGAgggttgggtcagtaaccgaaaggtctctAGTTTAAATCCCCAAGCCGACAAGTTGGTGGGGGGGGTCTGTCGAcggcacttaaccccaattgctTTCAGTCGCCGTTCGTAATGGCTGACCCtagccgtgaccccactctccgagggcgtctcagggagagttgggatatgcaaaaaacacatttacatttcACACACGTGTAACACTGGTACGTGTGACAGGACTGATATAAACAGACACCAAATTAGGATTATTAGCTGAAGACACTCTGCACATATACATACCGCTGTCTGATGAAAACCTTGTCATTTTATCCCAAAACATTTGTATTGAATGCAGTAACTCCCCTCAATATAGACTGAATATTTCCTGACTCTACGACTAAGAACATATGTTTATAATAGCTCCTGAAGTTTGGTAATTATATGTTTGTTAAAaatataaccttttttttttttttttcatttcctgAAGAGTCTGTTTTGGAGATGGGCCTACAGGGTTCTCATCAGAAAGCTATgatacacacgtgtgtgtgtgtgtgtgtgtgtatacacacacatctgAGAGTCACAAACACCCACAGCTGGAGTGTAAACACACACTTATCCAAACACGCTTGTCATACACCTGACCAAACACGcgtgtgcacacacgcacacacacacacgcaggcccAACTCATACATTGTCACACAGCCATACATATACAGGTATCATACACAGTGGATACAGCACACTAGGCTGGGAGTCATAGGGGAAACCAATATCTCTTACTGCATGTGTTTATGGATGTGGGTACGTAAACCCGCAAGGCACtgtggcccctcatgatgagttgtGTTGTTTTTACCCCGTTAAAGTTGCCCGTCCTTGGTATCGACTGACAGGAGACTGTGCTAGAACCTACTGTAGCTGTGCCAtagtctaatcaaatcaaatcaaatttattttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagagttTAATAGTGGCAAACCACGTCTGCTCATGTCATGCTGTTtgacgtagacacacacacacacacacacttacgtcTGCTCATGTCATGCTGTTTGACGtagacatccacacacacacacttacgtcTGCTCATGTCATGCTGTTTGACGtagacatccacacacacacacttacgtcTGCTCATGTCATGCTGTTTGACGtagacatccacacacacacacttacgtcTGCTCATGTCATGCTGTTTGACGtagacatccacacacacacacacacacttacgtcTGCTCATGTCATGCTGTTTGACGtagacatccacacacacacttagtcactttttatttatatttttttaagcaCTTTACATTTGTCAATCCTTTACTTGCTTTAGTCTTTATGCAGCATGTCACGAACCTGAAACGTCAGGATGCTTATAAGCTGGTTCAGACCGTGACGGGCACATTGAACAGGGAGTTGTTCCCTATGCTAGTTTGGAACATCGCAGAAAACTTCTCTTGGGTTTTAATCGGTCACGTCCCTGTCAGTCTCTGGTCTGGACGGCCATTTTGATCCAATGACAACAGCACTTTGCCGTGATCATGTGacttcacagggatgctggcactTACTGTACAAACAGACGTAAACACACACTTTCCATGAAAGTGGATCTCACATGATCCATATTCACCATTTCTTTCTCTTACCTTTTCTCGCTCTCCTTCACCTTTTTATCTCCATCCctcaaatacccccccccccctgaccctCCCACCTATGGGGCATGGTGTATGTGAACAGAGTGATACGAGAGGGTGGCGTTATAGAACTGGTACAGGAAGTTGAGGTCAAGTCATAGAGGGATTTAAGGGAAGATGGGTGGAAGTGAGGATCTGAGGGTTACTGAATAAGAACTGTGGGGTATACACTACAGTATGCCATACAGACTttagtacagaacagtacaggtGTAGTACACTACAGTATGCCATACAGACTttagtacagaacagtacaggtgtAGTACACTACAGTATGCCATACAGACTttagtacagaacagtacaggtGTAGTACACTACAGTATGCCATACAGACtatagtacagaacagtacaggtGTTGGTTTATGACTGCTGAATGTCCTTTTGGGTGGGTGGTgatgctgctgttgctcctgcacCGCCCCCTGTCGTTACCCACCGACCCCCTCctcaaatagacagacagacccctctctcatatatatatatatatatatatatatatatatataaggtggGGGGAGGTGTGgtaaaagaatatatatatatatatataaatagttGATTTAACAGCAATTTCATGTGGGATGTATTGGAAATAATGTGTTAATATTGTACATTTTTAGAATTGAAAAAAAAACgacatttaaaaacaaatccaAGTTGAGACCAATTAACTGCTTGTAATTGTGAAGACACAAATCTCTGTGATAACTGACATGGTCTTTAACAATGCTTTGAAACAAGGAAATGAATGGAAAAAACATGATCAACAAcaccttgtacacacacacacacacacacagtgtggtccTGGAGTAGTGTTATTAGATTCCGTTGGGGTTCTATCGAGTTCCGTTGGATCCCATTAGATTCCGTTGGGGTTCTATCGAGTTCCGTTGGATCCCATTAGATTCCGTTGGGGTTCTATCGAGTTCCGTTGGATCCCATTAAATTCCGTTTGATTCTATTGTCTCTACTTGTTCAGACTCGCTGCTGACCTGTGAACTATTCTCCATCTTCTCTTGGCCACTCATTCTTTCTGCAAAGAACCTTCAGGTCTCTCCCCAAACTGAGGAGGATGTGCTGTACTCTTCCTTTTAATGGTTTGAATTTGCTGTTCGGGTTTTTATTTCTCTTATCGAGAGAAATGGTTGGTTTTTATCTACATCGATTGATGTAATTCAGTTGGTCAGATTATGATGACATCTAGATTATACTCTGAATGGTCAGATTAAAATAAGAGATCcactctggttcatccttggagaGACGGGATCTCTACGGTCTGATCAGTAGAGTTACTGGAACCATTCCCACGTCTGTATTAAACTGGATAGGTTGTGCAAAAAAAGATGAATGTCTTACATAAAAGAATATATACAATTATAGAAAAAgtgattttaaaaatgtttaaaagaAATTGAGAAAGAATGTTTTAGGAGACAAATGTAATATTTTGTTTGTAATGACTTATTTTGTTTGGCAGAGGGCTACTGAACAAAGATTCCACTGTAATAAAGTCCTTTTAGTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040359.1 True 3464 mRNA 0.42 2 37665153 37668711

Neighbor

gene id symbol gene type direction distance location
LOC110510233 LOC106563796 coding downstream 8601 37627521 ~ 37656552 (-)
LOC118945348 NA coding downstream 99338 37552571 ~ 37565815 (-)
nsrp1 nsrp1 coding downstream 166255 37482837 ~ 37498898 (-)
LOC110509383 LOC106563737 coding downstream 257957 37404947 ~ 37407196 (-)
LOC110510185 LOC106563738 coding downstream 276906 37384321 ~ 37388247 (-)
LOC110510234 LOC106563797 coding upstream 1998 37670709 ~ 37716255 (-)
LOC110510235 LOC106563798 coding upstream 60853 37729564 ~ 37737582 (-)
LOC110510236 LOC106563799 coding upstream 83197 37751908 ~ 37780139 (-)
LOC118945300 NA coding upstream 177336 37846047 ~ 37847952 (-)
LOC110509458 LOC106592337 coding upstream 491468 38160179 ~ 38237799 (-)
G2181369 NA non-coding downstream 6195 37658724 ~ 37658958 (-)
G2181272 NA non-coding downstream 124903 37538487 ~ 37540250 (-)
G2181301 NA non-coding downstream 132915 37531908 ~ 37532238 (-)
G2181285 NA non-coding downstream 160726 37503923 ~ 37504427 (-)
G2181376 NA non-coding upstream 22249 37690960 ~ 37781721 (-)
G2181418 NA non-coding upstream 124427 37793138 ~ 37793378 (-)
G2181420 NA non-coding upstream 129093 37797804 ~ 37798046 (-)
G2181319 NA non-coding upstream 153728 37822439 ~ 37824815 (-)
G2181304 NA other downstream 126913 37536665 ~ 37538240 (-)
LOC110510193 LOC106563731 other downstream 425360 37234793 ~ 37241163 (-)
G2181143 LOC100136155 other downstream 431254 37232869 ~ 37233899 (-)
G2180587 NA other downstream 682444 36981957 ~ 36982709 (-)
G2181315 NA other upstream 111871 37780582 ~ 37787673 (-)
G2182508 NA other upstream 1245895 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 1290928 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 1690480 39359191 ~ 39370231 (-)

Expression


Co-expression Network