LOC118945300


Basic Information

Item Value
gene id LOC118945300
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37846047 ~ 37847952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040413.1
GGGTCTCTGAAGATGTCTCGGCATACGGGACAAGTGAGGTCCTCCTCTGGAAGAGAAGATGTGGTGGCCATTTCCCCCCTCAAATCCCACGTCTTCCTTCGGGAAAAAGAACAACCGTCCTGGCAAACCTTCACGGCACTCCATGAACTCAGGATGATGATCCCCACCACAACTGCAACTGTCCTTCTACATACGGTTCTTCCGTGAACTCTGTTCGTCTTCAAATAGGCACATTCTTCTCTGCTTCCCTGGGTCCTTAAAGTGTACAAGACAGTGGTGCACTGTTTTCTGTCATTATACCTGctaaaataatggttaataaacaACTAAGTGGGGGCTCTATAAAATGTGATTTCTTCCCCAAATTATGTTGAATATTTTCCCCCAATTTTCTTTTTTCTGTTTttagattttgggggggttttcACTCTCAAATACCAATTGTTTGTAGATAAACAGCACAATTGGATGTCCTGAGTCAAtgtcaatgcttaaatcacatcagaagACCATGGAAGAAAAATAACACTTTTAGATTTTGGACTAATTCCCCTTTAATTGTGCATCTAGCAAGTGAGGAATTTTCCATCTAATGTGCAGGTCTAGTGATGgttctgtactgctgctgctcatttcaTAGCAAAGTTTGCAAGAcaactttgcagttaacatttactTGAGAAGGTTTTAGGGAAAGTATTTCTGTCAACCCACAAGACAGTTATAACATCAACTGGCATCAGTCTTTACTGTGAGACGTCGatgaatcaaatgttatttgtcacaatgCAACAGGTATAGTACACTTTAGTTTGAAATGAACCACAGGACTTCATGCCATGCATTACATAACACTTAGATTTACATTTTGGTAAGTGATGGCAGGGTTGGTGTTGGTGAGCGGATACAATTATCAAGAATCTTGTCATAGAATGCAACACAATCAGGCAAAATAAATGTCAATGGTTATTGgaatttatttttcaacaaaaATGTTATACCCCCCCTGAGAATGACAATAGAATTGTTATGGAGTCATTTTGTTACTGTGGTAGCCTTACTAACATTGTATGAAAATTAAAGACACTTTCCAATAAAATATTTTTACAATTTCTGGATACACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040413.1 True 1125 mRNA 0.39 2 37846047 37847952

Neighbor

gene id symbol gene type direction distance location
LOC110510236 LOC106563799 coding downstream 65908 37751908 ~ 37780139 (-)
LOC110510235 LOC106563798 coding downstream 108465 37729564 ~ 37737582 (-)
LOC110510234 LOC106563797 coding downstream 129792 37670709 ~ 37716255 (-)
LOC118945268 NA coding downstream 177336 37665153 ~ 37668711 (-)
LOC110510233 LOC106563796 coding downstream 189495 37627521 ~ 37656552 (-)
LOC110509458 LOC106592337 coding upstream 312227 38160179 ~ 38237799 (-)
LOC110509387 LOC106563658 coding upstream 421941 38269893 ~ 38270880 (-)
LOC110510241 LOC106563658 coding upstream 449282 38297234 ~ 38298327 (-)
LOC110510112 LOC106563656 coding upstream 544585 38392537 ~ 38394321 (-)
LOC110510115 LOC106595428 coding upstream 600379 38448331 ~ 38454568 (-)
G2181428 NA non-coding downstream 8347 37837501 ~ 37837700 (-)
G2181319 NA non-coding downstream 21232 37822439 ~ 37824815 (-)
G2181420 NA non-coding downstream 48001 37797804 ~ 37798046 (-)
G2181418 NA non-coding downstream 52669 37793138 ~ 37793378 (-)
G2181376 NA non-coding downstream 64326 37690960 ~ 37781721 (-)
G2181435 NA non-coding upstream 8420 37856372 ~ 37858348 (-)
G2181465 NA non-coding upstream 54022 37901974 ~ 37902225 (-)
G2181466 NA non-coding upstream 54619 37902571 ~ 37902867 (-)
G2181769 NA non-coding upstream 173599 38021551 ~ 38022353 (-)
G2181813 LOC106563780 non-coding upstream 242254 38090206 ~ 38093855 (-)
G2181315 NA other downstream 58374 37780582 ~ 37787673 (-)
G2181304 NA other downstream 307807 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 361397 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 606254 37234793 ~ 37241163 (-)
G2181143 LOC100136155 other downstream 612148 37232869 ~ 37233899 (-)
G2182508 NA other upstream 1066654 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 1111687 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 1511239 39359191 ~ 39370231 (-)
G2183255 NA other upstream 1701401 39549353 ~ 39549869 (-)

Expression


Co-expression Network