LOC110509458 (LOC106592337)


Basic Information

Item Value
gene id LOC110509458
gene name LOC106592337
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38160179 ~ 38237799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967940.1
GCCCTGACCAAAGGCACTTACGTGCACAATCCTCTGCTTCAGTTGCTGAACATCCATCGTATCATAAGGGGATCTGGTCCACCCCGGTTCCACCTCGTGATGAGTGATGGCCTGCACACCATGTCCTcctTCTGGCTGGATCCCCAAATGAACCGTCTGGTTGAGGAGAACTGTCTGCTCCCCTACTGTGTCTGTCTACTGAAGAGGAGTGTCACCAACATACTGAAGGATGGAAGgtgtATGGTGACAGTATTGGAGATGGAGGTGGTGAAGTCAGCAGAGGAGGTGGGAGGGAAGATTGGAACACCTACTCCCTATGTAGAAGGCCAGAGAAGGACTCTTCAGAACCAGGTCTCTGCTGAGAGTCACGCTGCTGCTTCTACTTCTACTGCCTCCCCTCACAACCAGCCCAGAGCAGCCTCCTCTTCTACCAGAGACCCAGCAGGCAGAGGAGACTCCGGGAAGAAGACTCTGATAGTAGTCCCCATCGCCTGCCTCAGCCCCTACCAGACTAAatGGACCATCAGGGCCAGGGTCACCAAAAAGAACAACATCCTTCCTTGGCGCAACTTAAGACGAGAGGGAAAATTATTCTCCTTCGAGATCGTGGACGAGAGCGGGGAGATCGGAGTAACAGCCTTCGACAAGGAAGTGGACAAGTTCTTCTCTTTGCTGGAGACGGGCAAGgtgtacTACATCTCACGGGGCAAATTAAAGGAAGCCAATAAGAAGTATAATACCCTGAAGAACAACTATGAGATGACCCTTCTAAGTGAGACATCCATCGTGCCGTGCGAGGACGACCAGGACCTTCCCATGGTGGAGTGCGACTTCATACTCATCGCTCAGCTGAAGCACATGGAGAAGGACAACATCATCGatGTGATAGGAGTGTGTAGGAGTGTGGATGATCTGAGTAGCTTCACCGCTAAGACAGGTAGACAGGAGTATAAAAGAGACATTCACCTGGTGGATACCAGTGGCAAGGCGGTCGCAGTCACACTGTGGGGCGAGCAGgcagAGATGTTTGATGGTTCAGCCCAGCCTATAGTAGCTGTTAAAAGAGCTCGCCTGTCAGACTTTGGAGGCCAGTCTGTCTCTGCGATCTTCAGCTCCGCTGTCATGGTCAACCCTGACATACCTGAGGCCCATAGGCTGAGGAGATGgtatgaTCAGGAAGGTCATGCTCTGGACGGCCAATCACTGACCGAATTGAGGCCTGCAGGAGGCGGAGCCAACACTTGCTGGAAAACACTCAGCGACGtcaagactgaacaactgggacAAGGAGAcgagGCGGATTATTTCAGCTGTGTGGCCACAGTGTTGTTTAGTGGTAAGGAAAGCTGTCTGTACCAGGCCTGTCCCTCTGCAGATTGTAAGAAGAAGGTAATAGAACAACCAAATGGACTCTACCACTGTGAGAAGTGTGACAAACAATTCCCTAACTACAAATACTGCGTCATGCTGTCTgCTAACATAACAGACTTCAGTGATAACCAGTGGGTGACATGTTTCCATGAGACAGCAGAGGGCATTCTGGGTCACAATGCAGAAACTCTGGGCCAGCTTAAAGATACGGATGAGGCAGCGTTTGACGAGGTGTTCCAGAAGGTCAACTTCACCACACACATCTTCCGCAACAGAGTCAAGCTGGAGACGTACAACGATGAGTCCCGTGTGAAGGCCATGGTGATGGAGGTGAAACCAGTGGACCACAGAGAGTACAGCAGGAGACTCATCAGCAACATCAGGAATATGGCCGCCTAAAGAAGTGTTACTttgattgtgttactttttatttttatttgactatttttacTTTCATTTATTTAGTAATTATTTTCTTAAGTCTTTTTTGAAACTGAATTGTCagttaattaagggcttgtaagtaagcatttcaccatattctattgtattcggagcatgtgacaaatttgatttgatttaaacattAACCATTAGAGGGAACAATTcaaaactgacctaagatcagtgTTTAGGGGAAACTCAACCCCACACCCAGAATGATACACTCAACTGAACAAAATGGCCGCCTAAACACAGAGCCAGCTGACATTCATACTTTTACTGTCTGGTCCTGTATCTCTACAATTAAGCCACAAAATTGCAGAAACTGAACAAGGagatattttatttaatttttctCCATTTGATCTAATTTACATTTGATTATAGACTAAATAAATAGCATAtatgtcacgtagagtaggccagaaggcctaactggaaaacctaacctctatcacaTAAAAAGATGGCGTAGccgcaaaagttcttctgtgcTTCAGGGTGTTTATTTACATAGTGATTCCAGAACAAAAACAGCCATCCAAAGTATCCATTATGGGGCCAGCTTAAAAAAACAATGCTTCGCCCATCAACAGCTAATTCCCAAAATGACTCCCCTTCGAACtgaaagagaggctccttttgtaggggaAGCCCTCCCATCAGAACATAATCAGCACTGATTAATTAAGCAATTACTTGTTCAAGGCCTACATTTTCCATTCAGCTAAACATACTAAAGTCTATACATTGCAACATGTTTTTCATGACATAATATACCaatataacatttacaaaatCACATTACTACTGACATGGTGTCTTTCAATGTGTTAATTTACATTAACGAGCCATTCGGGACAGGCACTACAAAGTCAGCCTGATTGCCTTAGCTCAGGTCCTTATCCCAGCATACCCagaagctacagagatggagagaggaacagaaccaaACAAACAACGCGCTCATCCATAACATTGCTAAGTGTAATAAATGTTGCTTAAGTTAAACATGAA
>TU2494085
GAGAAGTGTGACAAACAATTCCCTAACTACAAATACTGCGTCATGCTGTCTgCTAACATAACAGACTTCAGTGATAACCAGTGGGTGACATGTTTCCATGAGACAGCAGAGGGCATTCTGGGTCACAATGCAGAAACTCTGGGCCAGCTTAAAGATACGGATGAGGCAGCGTTTGACGAGGTGTTCCAGAAGGTCAACTTCACCACACACATCTTCCGCAACAGAGTCAAGCTGGAGACGTACAACGATGAGTCCCGTGTGAAGGCCATGGTGATGGAGGTGAAACCAGTGGACCACAGAGAGTACAGCAGGAGACTCATCAGCAACATCAGGAATATGGCCGCCTAAAGAAGTGTTACTttgattgtgttactttttatttttatttgactatttttacTTTCATTTATTTAGTAATTATTTTCTTAAGTCTTTTTTGAAACTGAATTGTCagttaattaagggcttgtaagtaagcatttcaccatattctattgtattcggagcatgtgacaaatttgatttgatttaaacattAACCATTAGAGGGAACAATTcaaaactgacctaagatcagtgTTTAGGGGAAACTCAACCCCACACCCAGAATGATACACTCAACTGAACAAAATGGCCGCCTAAACACAGTCCTGTATCTCTACAATTAAGCCACAAAATTGCAGAAACTGAACAAGGagatattttatttaatttttctCCATTTGATCTAATTTACATTTGATTATAGACTAAATAAATAGCATAtatgtcacgtagagtaggccagaaggcctaactggaaaacctaacctctatcacaTAAAAAGATGGCGTAGccgcaaaagttcttctgtgcTTCAGGGTGTTTATTTACATAGTG

Function

NR:

description
replication protein A 70 kDa DNA-binding subunit-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967940.1 False 2832 mRNA 0.46 16 38160179 38237799
TU2494085 True 880 TUCP 0.39 5 38160677 38174302

Neighbor

gene id symbol gene type direction distance location
LOC118945300 NA coding downstream 312227 37846047 ~ 37847952 (-)
LOC110510236 LOC106563799 coding downstream 380040 37751908 ~ 37780139 (-)
LOC110510235 LOC106563798 coding downstream 422597 37729564 ~ 37737582 (-)
LOC110510234 LOC106563797 coding downstream 443924 37670709 ~ 37716255 (-)
LOC118945268 NA coding downstream 491468 37665153 ~ 37668711 (-)
LOC110509387 LOC106563658 coding upstream 32094 38269893 ~ 38270880 (-)
LOC110510241 LOC106563658 coding upstream 59435 38297234 ~ 38298327 (-)
LOC110510112 LOC106563656 coding upstream 154738 38392537 ~ 38394321 (-)
LOC110510115 LOC106595428 coding upstream 210532 38448331 ~ 38454568 (-)
LOC110510113 LOC106563832 coding upstream 224868 38462667 ~ 38463617 (-)
G2181842 NA non-coding downstream 16497 38143483 ~ 38143682 (-)
G2181837 NA non-coding downstream 22446 38137523 ~ 38137733 (-)
G2181834 NA non-coding downstream 25953 38134027 ~ 38134226 (-)
G2181831 NA non-coding downstream 32996 38126835 ~ 38127183 (-)
G2181822 NA non-coding downstream 49087 38110729 ~ 38111092 (-)
G2181976 NA non-coding upstream 68869 38306668 ~ 38387483 (-)
G2181978 NA non-coding upstream 84995 38322794 ~ 38336103 (-)
G2181979 NA non-coding upstream 95035 38332834 ~ 38341677 (-)
G2181983 NA non-coding upstream 96996 38334795 ~ 38357161 (-)
G2181977 NA non-coding upstream 100642 38338441 ~ 38381749 (-)
G2181315 NA other downstream 372506 37780582 ~ 37787673 (-)
G2181304 NA other downstream 621939 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 675529 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 920386 37234793 ~ 37241163 (-)
G2181143 LOC100136155 other downstream 926280 37232869 ~ 37233899 (-)
G2182508 NA other upstream 676807 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 721840 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 1121392 39359191 ~ 39370231 (-)
G2183255 NA other upstream 1311554 39549353 ~ 39549869 (-)
G2183279 NA other upstream 1355188 39592987 ~ 39594345 (-)

Expression


Co-expression Network