LOC110509387 (LOC106563658)


Basic Information

Item Value
gene id LOC110509387
gene name LOC106563658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38269893 ~ 38270880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590284.2
ATGACATTCCTCCGCAGGTTGCAATGGAACGACTCCTCCGTTCTAATCCATCCCCCAGGGTTCTACATCATCGGCTTCACCTCCCTGCCCTTTGCCAACCTCTACTTCATCTTCCTCGCTTTCGTTTACGTGGTGTCAGTCGTGTTCAACACATTTGTGATCTATATAATCATGGTGGACCATCGCCTCCACAACCCCAAGTTTATGGCGGTTGGTAACCTCGCGGTGGTTGATCTGGTGCTGAATACTTGCATTATTCCCGGTATGCTAAAGGCATTTCTTGCTAAGAACAATTTTGTGCCGTTTAATCTGTGTATGGTACAGATGTATGTGTATTATTCCTTCATATCGATGGAATCGTTCTCTATCGCCGTGCTCGCCTATGACCGTATGATCGCCATATGTTTCCCTCTGAGGCACGGCTCCATCAACACCATGACGAGTATGTCGTGTATTCTTGGTGTCATCTGGTGCTTCTGTCTTGGTATACAGATATTCAGCACCGCCATTATGACCAGGCTGTCCTACTGCGATTCCGTTAATGTCTACAGCTATTTCTGTGATTACGCACCAGTGTTTCGGCTGGCATGTAACGACAACACCCTGCAATGGGCTGTGGCTTCAGTTCTGAGCCTGGTTATCCTCCTCGGCCCACTGTCCTTCATCATTCTGTCATACATGAGTATTCTAATCGCTGTGTTCAGGATGAAAAGCGTTGAGAGTCGTGTGAAAGCGCTGGCCACCTGCACTGAGCACCTCATTCTAGTGGCAGTATTCTTCTTTCCAGTTCTGATTATTTTCATGGTTGGGTTATTAGCGCGCATCAAACCAGACCCCGACCTGCGCGTACTGAGCCTGTCGCTGGCCTCGTGCATTCCGCCCTGTCTCAACCCCATAGTCTACTCTCTGAAAACTAAAGAGATCAAGAGCAAAGTGCTCACCATGTTCAGGAGAATTAAAGTTCAAGTAGTTAACGATTGATCTTTAC

Function

NR:

description
olfactory receptor 2AT4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590284.2 True 988 mRNA 0.48 1 38269893 38270880

Neighbor

gene id symbol gene type direction distance location
LOC110509458 LOC106592337 coding downstream 32094 38160179 ~ 38237799 (-)
LOC118945300 NA coding downstream 421941 37846047 ~ 37847952 (-)
LOC110510236 LOC106563799 coding downstream 489754 37751908 ~ 37780139 (-)
LOC110510235 LOC106563798 coding downstream 532311 37729564 ~ 37737582 (-)
LOC110510234 LOC106563797 coding downstream 553638 37670709 ~ 37716255 (-)
LOC110510241 LOC106563658 coding upstream 26354 38297234 ~ 38298327 (-)
LOC110510112 LOC106563656 coding upstream 121657 38392537 ~ 38394321 (-)
LOC110510115 LOC106595428 coding upstream 177451 38448331 ~ 38454568 (-)
LOC110510113 LOC106563832 coding upstream 191787 38462667 ~ 38463617 (-)
LOC110509427 LOC106595428 coding upstream 199817 38470697 ~ 38477145 (-)
G2181857 NA non-coding downstream 104903 38164603 ~ 38164990 (-)
G2181842 NA non-coding downstream 126211 38143483 ~ 38143682 (-)
G2181837 NA non-coding downstream 132160 38137523 ~ 38137733 (-)
G2181834 NA non-coding downstream 135667 38134027 ~ 38134226 (-)
G2181831 NA non-coding downstream 142710 38126835 ~ 38127183 (-)
G2181976 NA non-coding upstream 35788 38306668 ~ 38387483 (-)
G2181978 NA non-coding upstream 51914 38322794 ~ 38336103 (-)
G2181979 NA non-coding upstream 61954 38332834 ~ 38341677 (-)
G2181983 NA non-coding upstream 63915 38334795 ~ 38357161 (-)
G2181977 NA non-coding upstream 67561 38338441 ~ 38381749 (-)
G2181315 NA other downstream 482220 37780582 ~ 37787673 (-)
G2181304 NA other downstream 731653 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 785243 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 1030100 37234793 ~ 37241163 (-)
G2182508 NA other upstream 643726 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 688759 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 1088311 39359191 ~ 39370231 (-)
G2183255 NA other upstream 1278473 39549353 ~ 39549869 (-)
G2183279 NA other upstream 1322107 39592987 ~ 39594345 (-)

Expression


Co-expression Network