LOC110510112 (LOC106563656)


Basic Information

Item Value
gene id LOC110510112
gene name LOC106563656
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38392537 ~ 38394321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591451.2
CTGTGATTAACAGAGACTGGAGTGTGTCCGGTCTCCCTGTAGGTTTGGACCTCTACTGTAAAAATGGGAAGGAAAACGACATGGAAGTGTTACTGTGGGGACGTGTGTCTTTGTTTATCAGCGGCGTTGTTTctctgtttgttgttgttgttttcttctgtcagaGCAGAGGATGAGTGTCCGTTATCCTGTATCTGTGCAAGAGACTCCGGGACAGTGACCTGCCATGACAAAGAGGACACCGAGTTACCGGGAGACATACCGGAGTGGGTGACCACATTAATACTCAGGGGGAACAACATCTCAACCTTACCGGGTGGAGGGTTCTCCTCGAATAACGGGACAAAACTTGAGCTAACGACCCTCTCACTGTCACATAATGGAATCATGGTGATCGAGGCTGACGCTTTCACAGGACTCCCACGGTTGCGTTTGCTGGATTTGAGTCACAATCGGTTGGTGTACATCTCAGTCCAGGCGTTTCACAGTCTGCAGGAGCTTCGCTCTCTTTACCTGAATGACTCCCTCCTCGCACCGGCTGTGGCGCAGCTCTCCAATGCATTGCATGGAGACATTTTATGCAACCTCCACCGGCTGGAGCTATCTGGCAACCGGTTGAAAACCATACCCATTTCAAGGTTGGATGCATTCAACCTTCACACTTTAGTTTTAACCAATAACTCAATTGAGAACATTGGTAAAGAGGACGTCTCCAGTTTGTACCGTCAAAAGCAAGTGCGCGTCTATTTATCACTAAACCCGTTCCGGTGTAACTGTGAGCTGGAGTCGTTCTACTTCTGGTTAAAGAACTCTTCTCAGTGCGTGGACGCCGCGCGCCTCCTGTGCGCCGAGCCTGATGCCAAGAAGGGGATTCCAATAGAGTGGTTACGCGGTGAGGACGTGGATTGTCTCAATGAGAACCTAGAGGCGGTGTCCTATGTGTTCCTAGGCATAGTCCTGGCGCTGATCGGCATAGTATTCCTCATGGTGCTCTATCTAAACCGGAGAGGAATCAAACGGTGGCTCAACAATATCCGCGATGCGTGCCGCGACCAGATGGAAGTGTATCATTACCGGTACGAGCAGGACTCCGATCCCCGGTTGGCTAACGTCGCCGTTTAACGTTCAATGTTCACTCGTCAATCGATGCCATATATCCACCATGTTTTTATATACAGAGGAAACTGTCCTTGAACGGATGAACTATTAGTATCAGTTTGTTATCAGCTGTAGTTGTTCATAATACTTGTCACATGACGTTGGAAAACAACAGACTTGGCTATTCAAAGGCGACAATAAGCCTACGTTGAAGAGGTGGCAATACGATCCATATTGTACTTCTACTTGAATGTACACATCTGTAAATATACCATTTACAACACAAAAGAGAACATGCTTATCTTCCACATGAGAACATGAGACTTttaaaacataaatgtactgagCCACCTGCATAACTTAGTTGAATCATGCACTAACTTCACAACAGAATACATCGTTGGAGTTCCTTCTACAGATTATTCTGAACTACTTTATCAGTATGAAGATAATGAAAACTGACTGTATAATCTGGAATTACAGTAGAAAAAGGTCTCTATTATTAAAAACCAAACTGCATATGCTAAAATATGAATAATAGTTGAAGTATGTTTTGCCTCTGTACTGTACAACCACCACACCATTATCTCAAAGGAATAGTCTGTTTGCTGTGGCATGGCTCCTTCATTCTGATAGATGTGTTTTCGATGCACATATAACTTGTGAGAcacaggagggtgtgtgtgt
>TU2494372
AGACATTTTATGCAACCTCCACCGGCTGGAGCTATCTGGCAACCGGTTGAAAACCATACCCATTTCAAGGTTGGATGCATTCAACCTTCACACTTTAGTTTTAACCAATAACTCAATTGAGAACATTGGTAAAGAGGACGTCTCCAGTTTGTACCGTCAAAAGCAAGTGCGCGTCTATTTATCACTAAACCCGTTCCGGTGTAACTGTGAGCTGGAGTCGTTCTACTTCTGGTTAAAGAACTCTTCTCAGTGCGTG

Function

NR:

description
PREDICTED: trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591451.2 False 1785 mRNA 0.45 1 38392537 38394321
TU2494372 True 256 lncRNA 0.44 1 38393497 38393752

Neighbor

gene id symbol gene type direction distance location
LOC110510241 LOC106563658 coding downstream 94210 38297234 ~ 38298327 (-)
LOC110509387 LOC106563658 coding downstream 121657 38269893 ~ 38270880 (-)
LOC110509458 LOC106592337 coding downstream 154738 38160179 ~ 38237799 (-)
LOC118945300 NA coding downstream 544585 37846047 ~ 37847952 (-)
LOC110510236 LOC106563799 coding downstream 612398 37751908 ~ 37780139 (-)
LOC110510115 LOC106595428 coding upstream 54010 38448331 ~ 38454568 (-)
LOC110510113 LOC106563832 coding upstream 68346 38462667 ~ 38463617 (-)
LOC110509427 LOC106595428 coding upstream 76376 38470697 ~ 38477145 (-)
LOC110509428 LOC106563805 coding upstream 89066 38483387 ~ 38484577 (-)
LOC110515723 ubl3 coding upstream 261306 38655627 ~ 38707017 (-)
G2181990 NA non-coding downstream 155 38392074 ~ 38392382 (-)
G2181989 NA non-coding downstream 678 38391635 ~ 38391859 (-)
G2181988 NA non-coding downstream 946 38391264 ~ 38391591 (-)
G2181985 NA non-coding downstream 2818 38389501 ~ 38389719 (-)
G2181976 NA non-coding downstream 5054 38306668 ~ 38387483 (-)
G2182014 NA non-coding upstream 14857 38409178 ~ 38409505 (-)
G2182019 NA non-coding upstream 22468 38416789 ~ 38417138 (-)
G2182123 NA non-coding upstream 58849 38453170 ~ 38475528 (-)
G2182124 NA non-coding upstream 61879 38456200 ~ 38457902 (-)
G2182150 LOC106592491 non-coding upstream 110200 38504521 ~ 38537399 (-)
G2181315 NA other downstream 604864 37780582 ~ 37787673 (-)
G2181304 NA other downstream 854297 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 907887 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 1152744 37234793 ~ 37241163 (-)
G2182508 NA other upstream 520285 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 565318 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 964870 39359191 ~ 39370231 (-)
G2183255 NA other upstream 1155032 39549353 ~ 39549869 (-)
G2183279 NA other upstream 1198666 39592987 ~ 39594345 (-)
G2181977 NA non-coding downstream 11748 38338441 ~ 38381749 (-)

Expression


Co-expression Network