LOC110509427 (LOC106595428)


Basic Information

Item Value
gene id LOC110509427
gene name LOC106595428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38470697 ~ 38477145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590318.2
AGGTATTGAGATGTGTCCTATGacaaccacacaacaacaacaacagcaagggTATTCATCTTTGACACATCTACTTCACTCAGTCTAGGCATGTCATACACAAGTACGGTGGTCCACAGGGGACACCCTACTACAGATTCACCATGGGGCTGCAGGTATAACAGTGGAggtggactcagagccagcaccACAAATTGGTCTTCAGTCCAACACACATCACCAGACTACTGAAGAGAGACATTTGGATCAAGTCTGTGGTACGACCAGATTATTACGAGCCAGGAGGAATCACTGATAACACCACCAGTCAGGATGAGttacctgacctctgaccctaaccAGACAGAGAACACTGACCCCATTATCCGACCCCCTTACTTCTTCATCAGTGGTTTCATCGACATCCCCCACATGGAGTACTATTACATCTTCCTCTGCTTCGTATACATCATCTCTCTGGTGGGCAACACCTTCGTCATGATGGTTATCTACATGGACAACAGTCTCCACAGCCCCAAGTACATTGCTGTGTTCAACCTGGCCTTCACAGACGTGTGTGGGAGCACTGCCATGGTCCCCAAGCTACTGGATACGTTCCTGTTCAGCAGACAGCTCATCTCCTACAACCAGTGCCTCACTAGcctcttcttcatcttcctcttcctcaacaTGCAGTCCTTCAACCTCACCATCCTCTCTTACGACAGACTGGTGGCCATCTGCTGCCCACTCAGGTACCATATGATGGTGACTCACAGGTCCATGTTCCAGCTGACAGGTGCTGCCTGGGCGTTGGCTGTGTTCCTGGTGTTGCTGGCTGTGGGCCTCATCACCCGACTCTCCTTCTGCCGgtcTCTGGTGATCAACAGCTACTTCTGTGACCACGGTCCCCTGTTCCGTCTGGCGGCCCCCTGTTCTGATGTGGTCCCTAACATAGTAATATCTTATCTCAACCCCTGTTTAATGCTCTATTTCCCCATGGTCTTCATCATATCATCATACATCTGTATCACACACGCCCTGGTCACCATCACACTGCCCCAGGACAGagtCAGAGGCTTGAAGACGTGTACCTCACACCTGATACTCGTAGCCATATTCTACCTGCCTATTAATATAACCTACCTCCTTCACCCAATCATACCAACCAACGCTCGGatattcaacctctccctgactttGGTGCTGCCGCCCATGCTCAACCCCTTCGTATATGTTCTAAAGACAGAGGAGTTTAAGGAATCGGCCAAGAAGCTGCTTCGTAAAAGAAGAGCACAGAGAGCTGTGGTGCCGATCCAATCAACATGAAGTGTTACTATTTATTTATATCTCTATTTGACTTGTTTTTGATTGAAATGCTGTGTAAGATATACTGTATCTGCCATAGTGAATAATTGTTTCAATTAAATGTAAAATTGTTTTTCTTCTAAAttaaa

Function

NR:

description
olfactory receptor 1F1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590318.2 True 1436 mRNA 0.47 7 38470697 38477145

Neighbor

gene id symbol gene type direction distance location
LOC110510113 LOC106563832 coding downstream 7080 38462667 ~ 38463617 (-)
LOC110510115 LOC106595428 coding downstream 16129 38448331 ~ 38454568 (-)
LOC110510112 LOC106563656 coding downstream 76376 38392537 ~ 38394321 (-)
LOC110510241 LOC106563658 coding downstream 172370 38297234 ~ 38298327 (-)
LOC110509387 LOC106563658 coding downstream 199817 38269893 ~ 38270880 (-)
LOC110509428 LOC106563805 coding upstream 6242 38483387 ~ 38484577 (-)
LOC110515723 ubl3 coding upstream 178482 38655627 ~ 38707017 (-)
LOC118945328 NA coding upstream 269985 38747130 ~ 38748239 (-)
katnal1 katnal1 coding upstream 272718 38749863 ~ 38776669 (-)
hmgb1a hmgb1 coding upstream 305940 38783085 ~ 38789254 (-)
G2182124 NA non-coding downstream 12795 38456200 ~ 38457902 (-)
G2182019 NA non-coding downstream 53559 38416789 ~ 38417138 (-)
G2182014 NA non-coding downstream 61192 38409178 ~ 38409505 (-)
G2181990 NA non-coding downstream 78315 38392074 ~ 38392382 (-)
G2182150 LOC106592491 non-coding upstream 27376 38504521 ~ 38537399 (-)
G2182179 NA non-coding upstream 88260 38565405 ~ 38579730 (-)
G2182300 NA non-coding upstream 118022 38595167 ~ 38595370 (-)
G2182304 NA non-coding upstream 132884 38610029 ~ 38610267 (-)
G2182310 NA non-coding upstream 154227 38631372 ~ 38631727 (-)
LOC110509458 LOC106592337 other downstream 296395 38160179 ~ 38237799 (-)
G2181315 NA other downstream 683024 37780582 ~ 37787673 (-)
G2181304 NA other downstream 932457 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 986047 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 1230904 37234793 ~ 37241163 (-)
G2182508 NA other upstream 437461 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 482494 38959639 ~ 38960457 (-)
LOC110509389 NA other upstream 882046 39359191 ~ 39370231 (-)
G2183255 NA other upstream 1072208 39549353 ~ 39549869 (-)
G2183279 NA other upstream 1115842 39592987 ~ 39594345 (-)

Expression


Co-expression Network