Gene
RNA
| Item | Value |
|---|---|
| gene id | hmgb1a |
| gene name | hmgb1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 38783085 ~ 38789254 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hmgb1 | Enables several functions, including DNA binding activity; DNA polymerase binding activity; and lipopolysaccharide binding activity. Involved in several processes, including positive regulation of MAPK cascade; positive regulation of macromolecule metabolic process; and regulation of cell migration. Located in several cellular components, including cell surface; condensed chromosome; and extracellular space. Part of alphav-beta3 integrin-HMGB1 complex and transcription repressor complex. Implicated in amyotrophic lateral sclerosis. Biomarker of Kawasaki disease; cerebral infarction; congestive heart failure; and systemic scleroderma. |
| description |
|---|
| PREDICTED: high mobility group protein B1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0006313 | transposition, DNA-mediated | biological_process |
| GO:0015074 | DNA integration | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0004803 | transposase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K10802 | HMGB1; high mobility group protein B1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021590217.2 | False | 2997 | mRNA | 0.41 | 5 | 38783085 | 38787435 |
| XM_021590218.2 | False | 1483 | mRNA | 0.45 | 5 | 38783085 | 38789254 |
| NM_001124714.1 | True | 716 | mRNA | 0.53 | 4 | 38783711 | 38785617 |
38,775,000
38,776,000
38,777,000
38,778,000
38,779,000
38,780,000
38,781,000
38,782,000
38,783,000
38,784,000
38,785,000
38,786,000
38,787,000
38,788,000
38,789,000
38,790,000
38,791,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| katnal1 | katnal1 | coding | downstream | 6416 | 38749863 ~ 38776669 (-) |
| LOC118945328 | NA | coding | downstream | 34846 | 38747130 ~ 38748239 (-) |
| LOC110515723 | ubl3 | coding | downstream | 76068 | 38655627 ~ 38707017 (-) |
| LOC110509428 | LOC106563805 | coding | downstream | 298508 | 38483387 ~ 38484577 (-) |
| LOC110509427 | LOC106595428 | coding | downstream | 305940 | 38470697 ~ 38477145 (-) |
| trnae-uuc-62 | NA | coding | upstream | 16328 | 38805582 ~ 38805653 (-) |
| trnae-uuc-63 | NA | coding | upstream | 32288 | 38821542 ~ 38821613 (-) |
| LOC110510245 | medag | coding | upstream | 38802 | 38828056 ~ 38832534 (-) |
| LOC110509390 | n4bp2l1 | coding | upstream | 504505 | 39293759 ~ 39308359 (-) |
| LOC110509389 | NA | coding | upstream | 578038 | 39359191 ~ 39370231 (-) |
| G2182351 | NA | non-coding | downstream | 31535 | 38734154 ~ 38751550 (-) |
| G2182345 | NA | non-coding | downstream | 55683 | 38721579 ~ 38727402 (-) |
| G2182337 | NA | non-coding | downstream | 66551 | 38690566 ~ 38716534 (-) |
| G2182336 | NA | non-coding | downstream | 94491 | 38686650 ~ 38688594 (-) |
| G2182334 | NA | non-coding | downstream | 97424 | 38685176 ~ 38685661 (-) |
| G2182392 | NA | non-coding | upstream | 19265 | 38808519 ~ 38809830 (-) |
| G2182402 | NA | non-coding | upstream | 44251 | 38833505 ~ 38833898 (-) |
| G2182477 | NA | non-coding | upstream | 93918 | 38883172 ~ 38884568 (-) |
| G2182498 | NA | non-coding | upstream | 116842 | 38906096 ~ 38906421 (-) |
| G2182506 | NA | non-coding | upstream | 120899 | 38910153 ~ 38910442 (-) |
| LOC110509458 | LOC106592337 | other | downstream | 608783 | 38160179 ~ 38237799 (-) |
| G2181315 | NA | other | downstream | 995412 | 37780582 ~ 37787673 (-) |
| G2181304 | NA | other | downstream | 1244845 | 37536665 ~ 37538240 (-) |
| nsrp1 | nsrp1 | other | downstream | 1298435 | 37482837 ~ 37498898 (-) |
| LOC110510193 | LOC106563731 | other | downstream | 1543292 | 37234793 ~ 37241163 (-) |
| G2182508 | NA | other | upstream | 125352 | 38914606 ~ 38914926 (-) |
| G2182749 | LOC106674859 | other | upstream | 170385 | 38959639 ~ 38960457 (-) |
| G2183255 | NA | other | upstream | 760099 | 39549353 ~ 39549869 (-) |
| G2183279 | NA | other | upstream | 803733 | 39592987 ~ 39594345 (-) |
