LOC110509472 (LOC106563882)


Basic Information

Item Value
gene id LOC110509472
gene name LOC106563882
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 42162163 ~ 42661980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968015.1
GTCTATatcgtaaaaattcatgaaaacaaacattttatttttggttttaatttacgtttagggttagacaTAAGGTTATCAAtgaggttagggttagcgttaggcTTAACGTTTGATTTTAATTagataaattgtagaaaataGGCGGGGTTTAGCCATGAGTATGACTTTGTCGCTGTGGTAACTAGCCGTGGACCGTGGATCGGGAAGTATAGCGCCATAAACACGGTACAGATGTCAGTAGGAATGGTCTAAACATCCAAGAAGACTGGTATTTTTTTGTGAGTTTGTAGATAATCACTCTTCACCAAATGACGAACTAAAAGGGGTCTGTTTGTCCACTCCCCCTGAGAAGAATGAAGGGGTTATTCCTGGTAGAGCCACTGGTAGCCTTCTATTCCTTTGCCAGTTTCCTGATCTACCCCTTGGTACAACAGTATGTGTACAGGAGACTATGGCAGGAGATGACCAACACAACCTACCCTGTCTCTGACAACACCTCACGCTGCGATCCTTCCAACACCAGCAGCCACCATGAGGAGGTGCAGAAGGCGgcgtctctcttctccctctacacTGAGCTCTTCTCCATGATCCCCTCTCTGGCCGTCACCCTCATCCTCGTCGCCTACAGCGACCAGCGCGGACGCAAGATCACCATCATCCTGCCTCTGATTGGCTCTCTGTTCTACGCCCTGTCTTTCCTGGCCGTCTCCTTCTTCGAGCTCGACCTCTACCTCCTCATCGTCTCGTCGTTCGTCAGCGCCCTGTTCGGGGGCTCGGGGACGTTACTGGGTGGCTGTTTCTCCTACATCGCTGACCTGTGTGAGGACGGACAGCAGAAGACCCTGCGTATGGCCGGGATAGACATGGTGATCGGCCTGCTGTCTGGAGTGGCCTCTCTCTCTACGGGATACTTCCTCCAAGCAGCAGGCTTCAACTGGCCCTTCTTCACCTCTGCTCTGTTCCAGTGTTTCAACCTGCTCTACGCCGTCTTCATCCTGGAGGAGACGCTCCAACGACCTCCAGATGACCCCCTGGACGGATCTCCGCGCCGCACCGCCATGCATCAGCTGGCCTGCGGGGTCTACCAGCTGTTTGCAGGGGCCAGCAGGAGGCGTAACGTCCTCCtggtgctcctcctgctcctcttctcctccttctccttcaccAACATGGGCGGGCTCTCCATGATCACGCTGTACGAGCTCAACCAGCCGCTGTGCTGGACCGAGATTCTGATTGGCTACGGCTCGGCGCTGTCCACCACGGTGTTCCTGACCAGCTTCGTGGGTGTGACGGTGTTCTCTCGCTGCGGCGTGCCCAACCTCGTCATCATTCTCATAGGGATACTGAGTGTCATGGCGGGTATGACCCTGGTGGCCTTCGCCAAGACCACGCTCATGATGTTCCTGGTGAGGCTTCCAATGCTGCTGGCTATCATGCCGTTCCCCGTGCTGAGATCCATGATGTCAAAGATCGTATCGAAGAACGAGCAGGgagcgtTGTTTGCGTGCTTGGCGTGCCTGGACAGTGTGAGCATTAGTGTGGCGATAGCTGTGTTCAGTAGTCTCTACGCTGCCACGGTAACCTGGTACCCGGGATTCTGCTTCCTGTTGTCTGCTGGACTCTGTGTCATCCCCTTGGCAATGCTAGCGGGTGTGGGACTGCTGGGAGTGGAAGAAGGTAAAGAGGCCAAGGAGACGGAGGCCCTCATCCCTGGAGAGGAAGGTCTCGCTGGGGAAGAGAACGATAATCCTCCCCTCACCTGAGACTGGAGGCCTGGAGcacttttctcttttctctctctatgtcaaTGTCTGTTCTGACAGACGGAGCTACACTCTTAATCCTCTGAGGATAAATCCATCGGAGAGATAGATTACCTCAGGTCAATTGCTCTGCTATTAAAGCCCTTTAGGAAATATGCACTATTAGCACGTGTGTCACCCACTTACAACATTGGAAGCACTTTTATTATTAAGCATGGCAGAAACATTTTTAAAGGAAATACAATGTGTGAATATGTGCCATGTGTAACTATgtttttacatatatatatatatatgtgtgtgtgttttcagaggtattcaact
>XM_036968016.1
CTGTCTATatcgtaaaaattcatgaaaacaaacattttatttttggttttaatttacgtttagggttagacaTAAGGTTATCAAtgaggttagggttagcgttaggcTTAACGTTTGATTTTAATTagataaattgtagaaaataGGCGGGGTTTAGCCATGAGTATGACTTTGTCGCTGTGGTAACTAGCCGTGGACCGTGGATCGGGAAGTATAGCGCCATAAACACGGTACAGATGTCAGTAGGAATGGTCTAAACATCCAAGAAGACTGGTATTTTTTTGTGAGTTTGTAGATAATCACTCTTCACCAAATGACGAACTAAAAGGGAACATCTAACCAAGGGTCTGTTTGTCCACTCCCCCTGAGAAGAATGAAGGGGTTATTCCTGGTAGAGCCACTGGTAGCCTTCTATTCCTTTGCCAGTTTCCTGATCTACCCCTTGGTACAACAGTATGTGTACAGGAGACTATGGCAGGAGATGACCAACACAACCTACCCTGTCTCTGACAACACCTCACGCTGCGATCCTTCCAACACCAGCAGCCACCATGAGGAGGTGCAGAAGGCGgcgtctctcttctccctctacacTGAGCTCTTCTCCATGATCCCCTCTCTGGCCGTCACCCTCATCCTCGTCGCCTACAGCGACCAGCGCGGACGCAAGATCACCATCATCCTGCCTCTGATTGGCTCTCTGTTCTACGCCCTGTCTTTCCTGGCCGTCTCCTTCTTCGAGCTCGACCTCTACCTCCTCATCGTCTCGTCGTTCGTCAGCGCCCTGTTCGGGGGCTCGGGGACGTTACTGGGTGGCTGTTTCTCCTACATCGCTGACCTGTGTGAGGACGGACAGCAGAAGACCCTGCGTATGGCCGGGATAGACATGGTGATCGGCCTGCTGTCTGGAGTGGCCTCTCTCTCTACGGGATACTTCCTCCAAGCAGCAGGCTTCAACTGGCCCTTCTTCACCTCTGCTCTGTTCCAGTGTTTCAACCTGCTCTACGCCGTCTTCATCCTGGAGGAGACGCTCCAACGACCTCCAGATGACCCCCTGGACGGATCTCCGCGCCGCACCGCCATGCATCAGCTGGCCTGCGGGGTCTACCAGCTGTTTGCAGGGGCCAGCAGGAGGCGTAACGTCCTCCtggtgctcctcctgctcctcttctcctccttctccttcaccAACATGGGCGGGCTCTCCATGATCACGCTGTACGAGCTCAACCAGCCGCTGTGCTGGACCGAGATTCTGATTGGCTACGGCTCGGCGCTGTCCACCACGGTGTTCCTGACCAGCTTCGTGGGTGTGACGGTGTTCTCTCGCTGCGGCGTGCCCAACCTCGTCATCATTCTCATAGGGATACTGAGTGTCATGGCGGGTATGACCCTGGTGGCCTTCGCCAAGACCACGCTCATGATGTTCCTGGTGAGGCTTCCAATGCTGCTGGCTATCATGCCGTTCCCCGTGCTGAGATCCATGATGTCAAAGATCGTATCGAAGAACGAGCAGGgagcgtTGTTTGCGTGCTTGGCGTGCCTGGACAGTGTGAGCATTAGTGTGGCGATAGCTGTGTTCAGTAGTCTCTACGCTGCCACGGTAACCTGGTACCCGGGATTCTGCTTCCTGTTGTCTGCTGGACTCTGTGTCATCCCCTTGGCAATGCTAGCGGGTGTGGGACTGCTGGGAGTGGAAGAAGGTAAAGAGGCCAAGGAGACGGAGGCCCTCATCCCTGGAGAGGAAGGTCTCGCTGGGGAAGAGAACGATAATCCTCCCCTCACCTGAGACTGGAGGCCTGGAGcacttttctcttttctctctctatgtcaaTGTCTGTTCTGACAGACGGAGCTACACTCTTAATCCTCTGAGGATAAATCCATCGGAGAGATAGATTACCTCAGGTCAATTGCTCTGCTATTAAAGCCCTTTAGGAAATATGCACTATTAGCACGTGTGTCACCCACTTACAACATTGGAAGCACTTTTATTATTAAGCATGGCAGAAACATTTTTAAAGGAAATACAATGTGTGAATATGTGCCATGTGTAACTATgtttttacatatatatatatatatgtgtgtgtgttttcagaggtattcaact
>TU2498901
tatatatatatatatacacacacacacacacacacacacacacacacacacacacacacacatatatatatatatgtgtgtgtgttttcagaggtattcaactctgaccctacgaggtcctgattcctgctggttttctgttctacctgttctaccacctgttctaccaccaaaagcagtggaactggcttccaggtctctactgtatatagggcgcactactttagacctgatCCCTATGCgccctggtctaaagttgtgcactatatttggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggttctatagggctccggtctaaagtagtgtactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggtttcataggactctggcctaaagtagtgcactatatagggaatagggttctatggggctctggtctaaagtagtgcactatatagggaatagggttccatggggctctggtctaaagtagtgcactatatagggaatagggt
>TU2498891
catatatatatatatatatatatatatatgtgtgtgttttcagaggtattcaactctgaccctacgaggtcctgattcctgctggttttctgttctacctgttctaccacctgttctaccaccaaaagcagtggaactggcttccaggtctctactgtatatagggcgcactactttagacctgatCCCTATGCgccctggtctaaagttgtgcactatatttggaatagggtgccatagggctctggtctaaagtagtgccctataatagggaatcgggtgccatagggctctggtctaaagtagtgcactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggttctatagggctccggtctaaagtagtgtactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggtttcataggactctggcctaaagtagtgcactatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggttccataggactctggtctaaagtagtgcactatatagggaatagggtgccatttttatGGCACATATTTATGTTTTTAATAACTGATGCAGTCATTCCAATGCATCTTAAATCTAATTTAAGGTTGAATTAGGCTTGTTTGGGAGGGGGTTGGTTTTTATTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTGTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACACTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTATTTTCCTAGTCCCTATACTTTCCTAGTccctgtactttactgtactctccTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCTTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCAGTACTCTCCTAGTCCCTGTACTTTCCTAGTCCCTGTACTTTCCTAGTCCCTATACTTTCCTGTATTTTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTgtactctcccagtccctgtacTTTCCTGTACTTTCCTAGCCCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACT
>TU2498900
ctctggtctaaagtagtgcactatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggttctatagggctccggtctaaagtagtgtactatatagggaatagggttccataggactctggtctaaagtagtgtactatatagggaatagggtttcataggactctggcctaaagtagtgcactatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggttccataggactctggtctaaagtagtgcactatatagggaatagggtgccatttttatGGCACATATTTATGTTTTTAATAACTGATGCAGTCATTCCAATGCATCTTAAATCTAATTTAAGGTTGAATTAGGCTTGTTTGGGAGGGGGTTGGTTTTTATTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTGTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACACTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTGTACTCTCCTAGTCCCTGTATTTTCCTAGTCCCTATACTTTCCTAGTccctgtactttactgtactctccTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTTTCTTGTACTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTTTCCTGTATTTTCCTAGTCCCTGTACTTTCCTGTACTTTCCTAGTCCCTgtactctcccagtccctgtacTCTCCTAGTCCCTGTACTTTCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACTCTCCTAGTCCCTGTACT

Function

NR:

description
PREDICTED: high mobility group nucleosome-binding domain-containing protein 5-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968015.1 False 2096 mRNA 0.51 6 42579603 42607073
XM_036968016.1 False 2113 mRNA 0.51 7 42579603 42607075
TU2498901 False 610 lncRNA 0.43 4 42162163 42604604
TU2498891 False 1564 lncRNA 0.45 2 42578094 42595819
TU2498900 True 1400 lncRNA 0.45 4 42578094 42661980

Neighbor

gene id symbol gene type direction distance location
dchs1b LOC105011153 coding downstream 79824 42257886 ~ 42499779 (-)
arfip2b arfip2 coding downstream 443651 42077453 ~ 42135952 (-)
fhdc3 LOC106563862 coding downstream 513283 42043930 ~ 42066320 (-)
trim3b LOC105011155 coding downstream 543405 41894749 ~ 42036198 (-)
LOC110510270 NA coding downstream 966883 41581549 ~ 41612720 (-)
LOC118945309 NA coding upstream 127182 42734257 ~ 42740444 (-)
eva1c LOC106563889 coding upstream 142850 42749925 ~ 42775546 (-)
bach1b bach1 coding upstream 843253 43450328 ~ 43470242 (-)
map3k7cl map3k7cl coding upstream 871115 43478190 ~ 43513478 (-)
cadm2a cadm2 coding upstream 1207554 43814629 ~ 44580847 (-)
G2185764 NA non-coding downstream 53942 42443381 ~ 42525661 (-)
G2185792 NA non-coding downstream 78595 42500094 ~ 42501008 (-)
G2185777 NA non-coding downstream 118135 42461035 ~ 42461468 (-)
G2185767 NA non-coding downstream 132327 42446699 ~ 42447276 (-)
G2185755 NA non-coding downstream 153085 42425553 ~ 42426518 (-)
G2185834 NA non-coding upstream 5779 42612854 ~ 42613561 (-)
G2185839 NA non-coding upstream 11096 42618171 ~ 42634883 (-)
G2185854 NA non-coding upstream 60600 42667675 ~ 42677362 (-)
G2185859 NA non-coding upstream 70960 42678035 ~ 42679318 (-)
G2185860 synj1 non-coding upstream 73499 42680574 ~ 42708130 (-)
G2185525 LOC106563877 other downstream 726597 41852200 ~ 41853006 (-)
G2185427 NA other downstream 983674 41595652 ~ 41595929 (-)
LOC110509471 LOC106563870 other downstream 1069202 41502509 ~ 41530610 (-)
sparta spg20 other downstream 1852589 40709409 ~ 40727062 (-)
ccdc169 LOC106563839 other downstream 1870517 40697812 ~ 40709293 (-)
G2186010 NA other upstream 358734 42963371 ~ 42984016 (-)
G2186492 grik1 other upstream 794538 43401613 ~ 43403275 (-)
G2186532 cct8 other upstream 918677 43525752 ~ 43526754 (-)
G2186529 cct8 other upstream 925850 43532925 ~ 43536669 (-)
G2186630 NA other upstream 1072877 43679952 ~ 43680591 (-)
G2185541 NA non-coding downstream 15729 42145737 ~ 42146434 (-)
G2185642 NA non-coding downstream 49079 42112694 ~ 42113084 (-)
G2185640 NA non-coding downstream 53471 42106915 ~ 42108692 (-)
G2185639 NA non-coding downstream 54435 42106009 ~ 42107728 (-)
G2185638 NA non-coding downstream 64846 42096855 ~ 42097317 (-)
G2185861 NA non-coding upstream 21051 42683031 ~ 42683886 (-)
G2185863 NA non-coding upstream 27804 42689784 ~ 42690625 (-)

Expression


Co-expression Network