stoml3b (stoml3)


Basic Information

Item Value
gene id stoml3b
gene name stoml3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 45431236 ~ 45461687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967515.1
atgtaaatgagatatttctatatttattctaaaataaatctgcaaacatttctaaaaacatgtttttactttgtcatttgaggtattgtttgtatatgggtgagaaaaaaaaaatatatatataatccatTGTGGCTGTTACCCAACAAAATGTGGACTAAAGTCAaagaaggtctgaatacttttgtgaAAATTGTAATACCAGAGAGGTTAtaatagatagagagggagagaatgtgcGTCTGTCTGAGTTCGTACCACTGTTTGAACATGTACGCCTCAATGAAATGAAATACTGTTGCTAAGTGACACTTTTGTTTGTAAACATTTTTATTGTAACGTGGACCGATGGGCAGGAGACTTGGAACTGTCTCTATGACAACATGTATTACGTTGTAAATGCGACCGTAGAAACCTGTTGTACTGAAGTTAGCCGCTCCACACATACCTTCTGTAACTGACTGACCGTCATGAACGAGAATGGAAGCAACACTAGTGTGTAGATTATCTTTCTCTCTgcacgtagcctagtggtcagagcgttggactaataacccaAAGATTGCCGGATCGAATCcaagagctgacaagTCGAGGAGACCCAGTGCGGTTGCATGGAAATGGACAGCGAGATAGAAAGTGGTAGGAAGAGACGAGTCAACAGCAAAGATGATCTGATAGctgatgTTGGTTCAGGGAGCCTAGGTTGCTGTGGCTGGCTCATTGTGATCCTCTCTGGACTGTTCGTCTTCTCCctgttccccttcaccatctGGTTCTGTATAAAGatagttCAGGAGTATGAACGTGCTGTCATCTTCAGGCTGGGCCGTATTACAGACCGGAAGGCTAAGGGACCAGGTATCTTTTTCGTGCTGCCATGCACAGACTCCTTCGTGAAAGTGGACCTGAGAACCGTGTCATTCGACATTCCTCCACAGGAGATTCTGACTAAGGActctgtgacagtgtgtgttgatGGGGTGGTGTACTTCCGGGTGAGTGACCCCATCTCCTCGGTGGCCAACGTGTCCAACGCAGACTTCTCCACCCGTCTCCTGGCCCAGACCACCCTGAGAAACGTCCTGGGAACCAAGAACCTGGCAGAGCTGTTATCAGACCGCGAGGGCATCTCACACAGTATGCAGGCCAGTCTGGACGAGGCTACTGACCCGTGGGGTATCAAGGTGGAGCGTGTGGAGATCAAGGATGTGAAGCTGCCCCACCAGCTGCAGAGAGCCATGGCTGCAGAGGCAGaggccacccgggaggccagggCGAAGGTGATTGCAGCGGAGGGGGAGATGAACGCCTCTCGGGCCCTGAAGGAGGCGTCTCTAGTGATCGCTGAGTCTCCATCAGGCCTCCAGCTGAGATACCTCCAGACCCTCACCACCATCGCCGCGGAGAAGAACTCCACCATCATCTTCCCTCTGCCCATGGACGTCATCAGTCACTTCATGAAGAAGTGATGTCATCAAAACTCGCCACCCACCACTACTGTCTAATGTAACCATTCAATCAGTTGATTTAGTTGATTCGGGTGAtttgaaagaagaaaaaaaaaagtttcatTTATTTTCTGCGAGGATTGTTTCAGATTTCAGGATTAGATGGGAATGAAACACCACCCAATAACGTTTTAGGGAATGTATATCTGCATGGTCAAGACCTTCGTTTGTCTGTTATGGTGGAAATTGAAAACCATTTAAATGTCTTTCTAGTgtgttaaaaaatataaaaaaaatatgtttgaaaTA

Function

symbol description
stoml3 Predicted to act upstream of or within signal transduction. Predicted to be located in cilium and membrane raft. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967515.1 True 1760 mRNA 0.46 8 45431236 45461687
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Neighbor

gene id symbol gene type direction distance location
paxbp1 paxbp1 coding downstream 255831 45120082 ~ 45175405 (-)
LOC110510296 LOC106563931 coding downstream 315620 45094418 ~ 45115616 (-)
LOC118945272 NA coding downstream 318281 45108220 ~ 45112955 (-)
LOC110509396 LOC106594559 coding downstream 540485 44884437 ~ 44890751 (-)
cadm2a cadm2 coding downstream 850389 43814629 ~ 44580847 (-)
LOC118945278 NA coding upstream 3063 45464750 ~ 45466196 (-)
proser1 proser1 coding upstream 5624 45467311 ~ 45495435 (-)
smpd1 smpd1 coding upstream 206570 45668257 ~ 45689589 (-)
LOC118945350 NA coding upstream 281929 45743616 ~ 45760571 (-)
si:ch1073-15f19.2 NA coding upstream 307045 45768732 ~ 45780271 (-)
G2188294 NA non-coding downstream 19124 45411798 ~ 45412112 (-)
G2188249 NA non-coding downstream 27875 45309286 ~ 45403361 (-)
G2188279 NA non-coding downstream 48016 45381399 ~ 45383220 (-)
G2188273 NA non-coding downstream 77974 45351101 ~ 45353262 (-)
G2188250 NA non-coding downstream 117667 45310966 ~ 45313569 (-)
G2188338 NA non-coding upstream 62062 45523749 ~ 45524676 (-)
G2188321 NA non-coding upstream 74759 45536446 ~ 45537510 (-)
G2188359 NA non-coding upstream 101421 45563108 ~ 45564851 (-)
G2188367 NA non-coding upstream 122371 45584058 ~ 45590590 (-)
G2188368 NA non-coding upstream 123409 45585096 ~ 45591081 (-)
G2188287 NA other downstream 31690 45397476 ~ 45399546 (-)
G2188280 NA other downstream 40092 45390142 ~ 45391144 (-)
G2188420 NA other upstream 341268 45802955 ~ 45804187 (-)
G2188877 NA other upstream 619699 46081386 ~ 46084784 (-)
G2188868 chordc1 other upstream 681632 46143319 ~ 46157806 (-)
G2189115 NA other upstream 1172551 46634238 ~ 46636168 (-)

Expression

stoml3b(stoml3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 500.
End of interactive chart.

stoml3b(stoml3) Expression in each Bioproject

Bar chart with 21 bars.
stoml3b(stoml3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
End of interactive chart.

Co-expression Network