vps36 (vps36)


Basic Information

Item Value
gene id vps36
gene name vps36
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 45495608 ~ 45537579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967253.1
CAGGCACATTTTTGGACACCCTTGAGGAAGTAGACACGGAAATGTCGTCGGATCTGTGAGAAGTTGGCAAATATTTATTTATACTTGTATTTTGTGTTGATTCAAGTAAAATGGACAGATTCACATGGTCAAATGGTCTTCTGGAAATGAATGAAACATTGGTGATTCAACAACGAGGTGTCAAACTTTATGACGGAGAAGACAAGGCCAAGTTGGATGTTGGAATTGCTCTGCTGAGTACTCACCAGTTAATATGGAGGGACCTGAAGAATCATgaatgCTGCATAGCCATACCCCTTTCTCAGATCATCTACTTTGAGGAACAAGCTGCGGGTATTGGAAAGAGTGCCAAGATAGTGGTCCACCTGCACGCTTCCCCAGCCAATAAGGAGCCAGGACCCTACCAGCAGAGCAAGTTCTCCTACTTCAAACTGTCCTTCAAAGAGCATGGACAGATAGAGTTCTTCCGGAGGCTGACCGAGGAGTTGAGCCAGAAGAGATGGGAGAGTACGCCCATGTCACAACCCATCCCTACGGCAACCAACTCACAGACAGGAAGGACGCGAGCGGTGGGGATCGTCGGCATCGAGAggaagatagaggagaggaggaaagagacagagaaaaacatCTCAGAGGCCTTTGAGGACCTCAGTAAGCTGATGGTGAAGgCGAAGGAGATGGTGGAGCTGTCCAGGTCCATCGCCAACAAAATCAAAGACAAGCAGGGAGACATCACAGAGGATGAGacTATCCGGTTCAAATCCTACCTGCTCAGTATGGGTATAGCCAACCCCGTTACCAGGGAGACGCACGGCTCAGGTACCCACTACCACCTACAGCTGGCCAAGCAGCTGGGAGACATTCTGCTGGCACCACTAGAGGAGCGTGGTGGGATGATGGCACTGACAGAAGTGTACTGTCTGGTCAACAGAGCTAGGGGAATGGAGCTGCTGTCTCCAGAGGATTTGGTGAATGCCTGTAAGATGTTTGAGTCGCTGAAGCAACCactgaggttgcgTATCTTTGACAGTGGTGTGATGGTGGTTCAGCTGCAGTCCCACAGTGAGGAGGAGATGATCTCCTCGGCCCTGGACAACGTAACTGATAAAGGCTCTCTGACAGCTGAGGAGTTTGCCAAGCTGCTCGGTCTCTCTGTTCTTCTGTCTAAAGAAAGgttGTTACTAGCAGAGAAGATGGGTCACCTGTGTAGAGACGACTCTGTGGAAGGCCTACGGTTCTACCCCAACCTTTTCAACAGTCAGGCTTGATGTAAACGCGTCCAAATAGTACCCTAGTCCCagtatagtgcactgcttttgaccaggggtcCATAGGGTTTTAGTGCACTACATCGGTTCTACTAAAAACTCTTCTCCACTCATGTCTGATCTGAGGACAGCATGTGTTGTGGGATCAACGACTGGCAAACCAAATCCCACTTCTCAGTTGTAccgggtatactacaaagcaggatcaatgagttagccaacTAACTTGCCTAAATATTCTGAAATTATATTCTCGACatgatttcatttttttttttagagaaaGATACATTTAAAATGGACATGGGTCTAATAATTGTATTCAGATAATCTCTCAGTTTAACTTTCTTAACAAATCAGAAAATTCAATAGATATTTCTGTTTGTTGATTTTAAAGTTAGCCGACCAACTAGTTGATCCTGCATTGTAGCAGAGCCCtctgtgtccatggttactgcgTTGTGTTGATACAGTTGAAAAGAGAAGGGCGACATCTATCCCAGACCTCACCTTGCTAGCACAAAGGGTGTTGTTCCTACGACTGTTCTCTGGACTCTCTAGAGCCGTTTGGGCCTCAGAGAGCTCGAGGCAAGTCAAATGTATCAGAATATATCTCGTCTCCTTAGTCCCAGACAACAATAATCTAGTATAGATGTAAATGGTTAATAaggtaaagttttttttttttctccatgtaTTGGATAATAAGGTTAACGTTGTCTGTCTCGATGCTTTCAGTTTGATATCATGTCTGTATCTGACATCATCAACATTGTACCTAGTGTTGGATCTAGGTAACGCTGTGGAACTAAGTTGTATAATACCAAACCTCTCGTTTTAATGTAAAATGTGTTTACTATTGGAACGTCTCAGTAAGTCTGAAACCTCCTGTTTGAAGAGAGTCTTAAATAACTCTCAGGTTGTACCCATCACCCCATGTTTTATGTGTTCCTTTACATGATAAAGACTGTATGTAACATAATGGTCAACGTGCTCCTTCATTCAAATGTAATTAGTTATTAAACTGTACCTGTACCTATATCA

Function

symbol description
vps36 Predicted to enable ubiquitin binding activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within endosome transport via multivesicular body sorting pathway and protein transport. Predicted to be located in endosome. Predicted to be part of ESCRT II complex. Predicted to be active in late endosome membrane. Orthologous to human VPS36 (vacuolar protein sorting 36 homolog).

NR:

description
vacuolar protein-sorting-associated protein 36

GO:

id name namespace
GO:0043130 ubiquitin binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K12190 VPS36, EAP45; ESCRT-II complex subunit VPS36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967253.1 True 2315 mRNA 0.45 14 45495608 45537579
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118945264 NA coding upstream 15590 45477230 ~ 45480543 (+)
LOC110517637 LOC106563928 coding upstream 72694 45409129 ~ 45422914 (+)
LOC110518300 NA coding upstream 105130 45383333 ~ 45391063 (+)
mtus2a LOC106563907 coding upstream 118505 45204557 ~ 45377103 (+)
gbe1a gbe1 coding upstream 411869 44918376 ~ 45083739 (+)
LOC110509476 thsd1 coding downstream 7350 45544929 ~ 45620110 (+)
tpte LOC106563924 coding downstream 95859 45633438 ~ 45661226 (+)
chordc1b chordc1 coding downstream 598505 46136084 ~ 46156675 (+)
LOC118945298 NA coding downstream 749005 46286584 ~ 46292572 (+)
LOC110517634 LOC106563910 coding downstream 840147 46377726 ~ 46439876 (+)
G2187881 NA non-coding upstream 18746 45476331 ~ 45476862 (+)
G2187882 proser1 non-coding upstream 21256 45455725 ~ 45474352 (+)
G2187888 NA non-coding upstream 30279 45464752 ~ 45465329 (+)
G2187850 stoml3 non-coding upstream 39016 45437718 ~ 45456592 (+)
G2187934 NA non-coding downstream 25713 45563292 ~ 45566596 (+)
G2187943 NA non-coding downstream 46461 45584040 ~ 45590546 (+)
G2187944 NA non-coding downstream 47512 45585091 ~ 45591072 (+)
G2187946 NA non-coding downstream 61238 45598817 ~ 45603196 (+)
G2187949 NA non-coding downstream 80460 45618039 ~ 45618346 (+)
G2187841 LOC106563930 other upstream 86888 45394006 ~ 45408720 (+)
G2187837 NA other upstream 137823 45356811 ~ 45357785 (+)
G2187834 NA other upstream 142339 45351759 ~ 45353269 (+)
G2187008 NA other upstream 984288 44510996 ~ 44511320 (+)
G2188678 NA other downstream 782949 46320225 ~ 46325583 (+)
LOC110517633 LOC106604056 other downstream 909395 46446951 ~ 46489028 (+)
LOC118945337 LOC108237022 other downstream 966696 46504069 ~ 46563999 (+)

Expression

vps36(vps36) Expression in all Baseline Samples

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vps36(vps36) Expression in each Bioproject

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vps36(vps36) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network