smpd1 (smpd1)


Basic Information

Item Value
gene id smpd1
gene name smpd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 45668257 ~ 45689589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967596.1
CTGGCTCATAAAACAAGGCAGTCATCGGGCCATtcgtttgtgtttgtttgttgttcAGCAGTTTTAGGGTGTTAGACCCGAAGGTTTCTCTGTCGATTCAGCAGCACTCGAGTTTGTCACTTATCGATTATATTTATTGTAGCGCTGTAGACTTTTATAAAGAGGGAAACAAAGCTGTCATCACAGcgcttcctgtttttttttattacatcgGTGTTGCAACCAAACAGAACACAACAGCTGCGAATGCAAACTTGGTTATTGCGTGATAGCTGACTAGTTAACTAAGCAACTAGAGGTTTTAGAAAAAAGCAATTTGGATGGTTTatttttgtaacttatttttcaACTATTGGACTGAAACATTGTTTTGAATCCCTTTCGGCGAGCTGACTTCGCTGTTGAGCAGAACAATGCGCTTCGCACCTATCCCCTGCGCCGTGGTGTTGCTGTGTTGTGTTCTGCTGTTGTGCTCGATACCGTTGGGGACCTCGTTCCCCGTGCAGGACGAGGGGAAACCGGGCATAACGTTTCTGGAAGAGGTCGGGCGTCTCCGGGTCGGGTTCAACTGGCGGAACCTGACCTGTCCGGTGTGCAAAGTCCTCTTCACCATCCTGGATGTCGCTCTGCTGAGTGATGTTAATGAGGAACGTGTTGCGTGGGCTGTGGGTGAGGCCTGTATCCGTCTCCACCTGGCTGAAGAGCGGGTCTGTCGTCAAATCACAGAGCTGTTCAGAGATGACTTCATCAGGGCCTTGCAACAGTCTCTGTTGTGGCCGTCGGAGGCCTGTGCTCTGCTGGTTGGGAGGTCATGCGGACGCTTCGATATCTATGCCCCCTGGAACGTAACCCTACCCCGGATCCCCAAACCCCCAGTCACCCCGCCCGCACCCCCCAAGCCTGGAGCACCACAGAGCAGGGTCCTCTTCCTCACAGACATACACTGGGATCAGGACTATGCAGTGGGCAGCTCTGCTGACTGTAAGGACCCGCTGTGCTGTCGTAATGAGTCTGGATCTCCCAGCTGGAATCAGAGAGCGGCTGGGTTCTGGGGCTCCTACAGTAAATGTGACCTGCCCCTGAGAACTGTGGAGAACATGTTGGAGAACGCAGCGCGAACCGGACCGTGGGACTGGGTCTACTGGACAGGAGACATACCTGCTCATAACATCTGGTCTCAAACCAGGAAGCAGCAACTGTCTGAACTCACCGTTGTCACCAGACTGATCCACAGTCACCTAGGTAACTTGAAGGTTTACCCGGCGATCGGTAACCATGAGAGCACCCCGGTCAACAGTTTCCCCCCGCCGTTCGTCCATGGCAACCGGTCGTCGCGCTGGCTCTATGACACCATGGCCGAGGAGTGGGCGCCATGGTTACCAGAACAGGCCCTGAAGACTCTTAGgcATGGTGGGTTCTACACGGTAGAGGTCCAGCCAGGTCTTCGAGTGGTGTCTCTGAACATGAACTTCTGTGCCAGGGAAAATTACTGGCTGATGGTCAACTCTACTGACCCTGCTAACCAGCTCCAGTGGCTGATCCACATACTACAGGCCAgtgaagagaagggagagaagGTCCACATCATCGGTCACATCCCCCCTGGTCTCTGTTTGAGCAGCTGGAGTTGGAACTACTACCACATCATCAACCGGTATGAGGGTACGATCACGGGTCAGTTCTTCGGCCACACGCACATGGATGAGTTTCAGATGTTTTATGATGAGGCGACGATGACTAGGGCCGTGGGCGTGGCCTTCATCGCTCCCTCCATCACCACCTATGTCAACCTCAACCCAGGTTACCGGGTCTACCTGGTCGACGGTAACTACAAGGGCAGTTCCCGGTTTGTTCTGGACCACGAGACGTATATCTTAAACCTTACAGAGGCTAACCGACAGCCTGAAGGGGGggtctcctccctgctccccaccACCTCACAACACGCCATCTTCCACCCTGACCCAAACCCCAAATGGACCCTCCTCTACCGTGCTTCCGAAGCCTACGGCGTCTCATCCCTGTTCCCGTCGGACTGGGACGGGCTGATCAGGACCTTCCTCCAGGACGACCGTGTGTTTCAGCGGTTCTGGTACCTCAGACATAAAGGCCATGTGTCAGAGCCCTGTATAGACGCCTGTAAGACAACCGTTGTCTGTTTCCTACGTTCAGGTAGATATGACGAGCTGGAGCAGTGTGACCTGTTGGAGTTCGGGGGAGATATGGTTTCAGCTGTTAGGAAGACACTGTGTTGAACAgagatgatgggggggggggggggggggggttggttaaCTTTGAATGTTGGTCATGTTGTCACCAACTGTTCAAGACATTGAATGTGATTCTGGGTAAGTGAAATGTCATGGAACACTGGTTGATGGTCTGGTTCTTTTGGTTCAACCTGTCTGTCCAATCAGTATCTGCGTTGTCAGAGGATATTTACAGCTAGTGAATGTCAAAATAATGGGAAGGAAAAAAAACGATTTAGATGTTTTCAAGTTTTGTTTTTACAAAGACAGAACGTTTAGTCTCTTCACTGAGGAGTTGAGTCCTGAAGTGTTCATAGTGAAGTCTCCAAAGGGTTGCATTGATAGTGTTACTGCATTAATTTAGCCTAATAGATTTCATCACGTTGCGATAGAGTTGAAGGTGTCTATGCTCAGTCCGGGGCGTTTTCAGAATGACCGGCTCAGCCCGGGGCGTTTTCGGAACTGACTGGCTCAGCCCGGGGCGTTTTCGGAACTGACCGGCTCAGCCCGGGGCGTTTTCGGAACTGACCGGCTCAGCCCGGGGCGTTTTCGGAAATGACCGGCTCAGCCCGGGGCGTTTTCGGAAATGACCGGCTCAGCCCGGGGCGTTTTCGGAAATGACCGGCTCAGCCCGGGGCGTTTTCGGAAATGACCGGCCTTAATTTTCTGGTTTTGTGAAAGCTGTTTTAGGAACTGCTAACTCACCTTGGTGTCCAGattttattattgaaccattttCAGCTCTGTATTTGTCTTCAGTGAGTTGTTTGCACATGTTGTGAAATGAATATACTGGTGATTTTCAGAGTCTACTACACCAATACCTTCCACTCTCATTCAGCACTTTAATTTCTGCTGTGgattgtcctgtgtgtgtgtgtaacatgtcTGTAATTATTAAAAATATGAGAATTTTTGTGAATAAAGATGCATTTTGAGATTTACTTAA

Function

symbol description
smpd1 Predicted to enable acid sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin catabolic process. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in Niemann-Pick disease; Niemann-Pick disease type A; and Niemann-Pick disease type B. Orthologous to human SMPD1 (sphingomyelin phosphodiesterase 1).

NR:

description
sphingomyelin phosphodiesterase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K12350 SMPD1, ASM; sphingomyelin phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967596.1 True 3201 mRNA 0.51 9 45668257 45689589

Neighbor

gene id symbol gene type direction distance location
proser1 proser1 coding downstream 172822 45467311 ~ 45495435 (-)
LOC118945278 NA coding downstream 202061 45464750 ~ 45466196 (-)
stoml3b stoml3 coding downstream 206570 45431236 ~ 45461687 (-)
paxbp1 paxbp1 coding downstream 492852 45120082 ~ 45175405 (-)
LOC110510296 LOC106563931 coding downstream 552641 45094418 ~ 45115616 (-)
LOC118945350 NA coding upstream 54027 45743616 ~ 45760571 (-)
si:ch1073-15f19.2 NA coding upstream 79143 45768732 ~ 45780271 (-)
LOC110510923 LOC103354503 coding upstream 115279 45804868 ~ 46118068 (-)
grm5a LOC100700102 coding upstream 528974 46218563 ~ 46294863 (-)
tmem135 tmem135 coding upstream 635612 46325201 ~ 46353650 (-)
G2188379 NA non-coding downstream 7033 45646789 ~ 45661224 (-)
G2188388 LOC106563924 non-coding downstream 24770 45633519 ~ 45643487 (-)
G2188381 NA non-coding downstream 46029 45620991 ~ 45622228 (-)
G2188370 NA non-coding downstream 67397 45598750 ~ 45600860 (-)
G2188368 NA non-coding downstream 77176 45585096 ~ 45591081 (-)
G2188409 NA non-coding upstream 6178 45695767 ~ 45700459 (-)
G2188412 NA non-coding upstream 13349 45702938 ~ 45704906 (-)
G2188427 NA non-coding upstream 27811 45717400 ~ 45734908 (-)
G2188456 NA non-coding upstream 121444 45811033 ~ 45811343 (-)
G2188457 NA non-coding upstream 121850 45811439 ~ 45811993 (-)
G2188249 NA other downstream 264896 45309286 ~ 45403361 (-)
G2188287 NA other downstream 268711 45397476 ~ 45399546 (-)
G2188280 NA other downstream 277113 45390142 ~ 45391144 (-)
LOC110509396 LOC106594559 other downstream 777832 44884437 ~ 44890751 (-)
G2188420 NA other upstream 113366 45802955 ~ 45804187 (-)
G2188877 NA other upstream 391797 46081386 ~ 46084784 (-)
G2188868 chordc1 other upstream 453730 46143319 ~ 46157806 (-)
G2189115 NA other upstream 944649 46634238 ~ 46636168 (-)

Expression

smpd1(smpd1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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smpd1(smpd1) Expression in each Bioproject

Bar chart with 21 bars.
smpd1(smpd1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network