c1qb (c1qb)


Basic Information

Item Value
gene id c1qb
gene name c1qb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 47304038 ~ 47314715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967905.1
cagtgtctctctctctctctccctccatcagtccATCTGTAAATCAGTCTCAccgttcatctctctctctctctgttcatcagtcagtctgtctgtctgtcgttgtctTCAGAAAGACCGACACTCTTGGAGCCTCTAAGGAGCCCACAGTCATCTGAAAACGACAGACCACCAACTACAGACCCCTCCCAGAGGCTGGCAGACGACGGCACATATCAGATGgcCACCTGGTGGTTGAGGTGGGGTACTGCTGCTGTGATGGTGGGCAGCATCCTGGCCTCCCTTGTAACCTCTGTTGCCATGGAGCCCAGCTGTAACGCAAACCTTGGTTACCCCGGAATACCTGGGATACCAGGAGCTCACGGAGCCAACGGTAAAGACGGAccaaagggagagaagggagacccAGGTGAGTCTGGTCTGCGAGGGAAGGGTCTGAAGGGGGAGCCAGGTGAATCAGGTCCTCCAGGACGGTCAGGTCTTCAAGGGAACCCCGGTCGGCTTGGACCCAAAGGACCCCCTGGCCCCCCTGGGGAGAAAGGTAGTCCCTCTGGGGTCGACTCCTCCCTCACCTCCTTCTTCTCCTGCAAGaggaacACAATTCAGCAGCCTCCTAAGAACTTGCCCATTCGTTTCGACGGACCAATACTGTCGGGCCTTGACCCTAGCCTGGAAGGTGTATCGCTGAAGGACGGGTTGTTTAAGTGTACCATTAGTGGCGTGTACTTCTTTACCTATCATCTGTCGGCTAAGAGCCTGATCTGTGTTAACCTGAAGAAGGGGACAGAGACCAAGgtGGGGTTCTGTGATTCGTCGAGTGGATTCCTGGTGACGTCTGGGTCGGTGGTGCTGGATCTGTTGGAGGGAGACGTGGTGTCTCTACAGCCCACCGATAACAACGCTATCATCACTAAAGACGAACGAGCTGACAACACTTTCACCGGCTTCCTGATCTTGCCCAAATCATAGAACCACATGAAATCACACAGAGCCACACAGAACCACATTGAATGAGCTCAAACCAGATTCAACCAGATCTAATCTCGGTTACCCAGAAGTAACATTTTTGCGAAAGTTTGTCACTTCCTGTTTTACTTCAATTTTGAACAATCCTGATTCTATCAAATAATCAATGATGAAAACCCCAAACCAGGAACTACCGCAGATCGTAATCCCATAATTATACGTGAGCCTTGACAGATTGTTTCCAATTACACACAGAATTTGTCCACGAGAGATTAAACCAGATCACACCTGCTGAAACCAGCTTCCCGCTCTTCCACACCACATAAAATACAtatcatagccacatcattctGTTCTAGAAGCATCTGCAGAACAACCAAccatctctgtgtctgtttctgccTCCCTGTCTATACTGCTGCTGCTTGCTGAGACagttcatcaatcaatcaatcaattcattTCCCCAGGTCGttggttgtaaatgagaacgtatTCTCAGTTAACTCACCTGGTGAAATGAAGAATACAtttcaaataaatcaaataatcAGTCATGTATTGCATCTGCTGAGCTGCCTACCAAAACTCAAAGATACCATTTTGGAAATGAGTTTGCCATCAATAAAGTGATTTGttaccagtt

Function

symbol description
c1qb Acts upstream of or within complement activation, classical pathway. Predicted to be located in extracellular region. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human C1QB (complement C1q B chain).

NR:

description
complement C1q subcomponent subunit B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967905.1 True 1612 mRNA 0.49 5 47304038 47314715
Loading

Neighbor

gene id symbol gene type direction distance location
c1qc LOC106591842 coding upstream 17025 47280097 ~ 47287013 (+)
c1qa c1qc coding upstream 33535 47243005 ~ 47270503 (+)
polq LOC106595115 coding upstream 117417 47105413 ~ 47186621 (+)
LOC110510302 LOC106563936 coding upstream 415504 46863262 ~ 46888534 (+)
inpp5kb LOC106563939 coding upstream 668318 46588208 ~ 46636264 (+)
hoatz LOC100286538 coding downstream 28844 47343559 ~ 47359357 (+)
layna LOC106563960 coding downstream 52379 47367094 ~ 47385736 (+)
hspb2 hspb2 coding downstream 102213 47416928 ~ 47422187 (+)
LOC118945344 NA coding downstream 109345 47424060 ~ 47428623 (+)
bicdl2 LOC106594403 coding downstream 133043 47447758 ~ 47475718 (+)
G2189567 NA non-coding upstream 14992 47288134 ~ 47289046 (+)
G2189556 NA non-coding upstream 47054 47252265 ~ 47256984 (+)
G2189555 NA non-coding upstream 52876 47246885 ~ 47251162 (+)
G2189551 NA non-coding upstream 72828 47230435 ~ 47231210 (+)
G2189544 NA non-coding upstream 104287 47196919 ~ 47199751 (+)
G2189613 NA non-coding downstream 44946 47359661 ~ 47360112 (+)
G2189620 NA non-coding downstream 59104 47373819 ~ 47374086 (+)
G2189621 NA non-coding downstream 60436 47375151 ~ 47375456 (+)
G2189607 LOC106563953 non-coding downstream 80977 47395692 ~ 47397601 (+)
G2189507 LOC106563947 other upstream 79685 47187555 ~ 47224353 (+)
G2189534 NA other upstream 138512 47165061 ~ 47165526 (+)
G2189323 LOC107735056 other upstream 226565 47070742 ~ 47077473 (+)
G2189283 NA other upstream 361279 46895556 ~ 46942759 (+)
G2189691 NA other downstream 250534 47565249 ~ 47567756 (+)
G2189694 NA other downstream 312587 47627302 ~ 47639517 (+)

Expression

c1qb(c1qb) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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c1qb(c1qb) Expression in each Bioproject

Bar chart with 21 bars.
c1qb(c1qb) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network