crfb12 (ifnar1)


Basic Information

Item Value
gene id crfb12
gene name ifnar1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 47479567 ~ 47511434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124415.1
AGATACAGACACTAGCAACTAGAGAAACAGACACACCTGGACTGGGAGATCCAGACACTAGCAACTAGAGAAACATACACACCTGGACTGGGAGATCCAGACACTAGCAACTAGAGAAACATACACACCTGGACTGGGACGCTTCTGACCTGGGAAAATTAGAAATCAATCAACTTCATGGACATTGTGTACTTCCGGGGACTGTAtgacatcaccatgacaacccTGTTATGACCGTAACAGGGTCAGAAATGGCCAATGAGATGCTGCCCTGCTCCGAGACAGGGCTGCAGTGTCCATGTTGTACAAATTGACCAGGTGAGATTGAGAGGGAGgtgtctccatggtgatgtgGCTTCAGTGTTCCATCTGTCTCTGGATCTTCCTCTGGCCTTCAGCAGggtgtctctccccccctcagaATGTGACTGTAGAGTTTCTGGACTTCCAAGGGAGAGTCCACTGGCTGGCCGGAGCTGGCAACACCAACCATACCCACTACTCTGTAGAGATTGGAGCACTCAGTGAGTCATGGTGGCAACCCTGTAACTGCAGCAACCCCGTTGCCATGGCGTGCCCCCTGGACATTCCGCTGGAGGACCTTTTAAAGAATTACAACGTCAGAGTGAGGGCGGAGCTGGAAGAGCAGACGTCAGACTGGAAATACCTGGAGAACACAGTACAGCCCTACTCAGACAcagtgTTGAGTGCCCCAAGTCTGGAGTTGTGGGTGGAGAACCAGAGTCTATGTGTCCAGCTTCACCATCCTGCTCAGAACATCTTCAAATTATACAACATCACACTGCTGAAGAATGTTCAGGAACACAACGCcacgGTTATGTCAGACATTGAGTCGGGCTCAAAGAGAGTGTTCTACCATCTCAGTCCAGACCACACCTACTGCCTCTTGGCCTCAGCCAATCACTACAGCCTACGCCGTCACATGACTGCTCAGGGGTGTGTCAACCTGACGAGACACAGACCAGATACCCAAGgTCATCAGAGATTGGTGGGCATGGCTGTGGGCGTGTTCCTGCTTCTGGCTGTTCTAATTGGTCTGATCGCTGTGACACGCTATGTCCTGAAGAGCACAGACCCCACCCCCACAGCTCTGtctgtgtgtgtgcgttcagcAGGGTGCATGGTGACTCCGGAACAGGTGGTGTGTCACCCAGTGATGTGTGGGACTGCCCCCTCTGGTTACCTGAGAGCTGTCATGACTTTTCACCTTGACATCCGCCTGGAGACAGAGActctccttccctgttccctTGACAACCACCTGGAGACAGAGACACTCCTACCCTGTTCACTTGACgaccacctggagacagagaCCCTCCtgccctgttccctacatacagatataggatcagcttcccctctcaCAGTCtttaccttaaccattagtggaggAAATACAAAATggacccaagatcagcgtctaggggcaacttcacctcACACCCTACTAtccctgtctacctccccctctcccttgtcttcctcgtctctctccccccctctctcctctccctcctccactctctcctctggCTATGCTCTGGCCTGGGACAGTGTATCCAACCAGagcgacacagagacacacacagacagaactactgaCATAACTACTGACAGAACCGCCGACAGAACTGCAGACGGAACTACTGACAGAACTACTGACATAACAACTGACATAACTACTGACATAACTACTGACAGAACTACTGACAGAACTACTGACATAACAACTGACATAACTACTGACATAACTACTGACAGAACTACTGACAGAACTACTGACAGAACTACTGACAGAACAACTGACAGAACTACTGACAGAACTACTGACATAACTACTGACAGAACTACTGACATAACTACTGACAGAACTACTGACAGAACTACTGACAGAACTACTGACATAACTACTGACAGAACTACTGACAGAACTACTGACAGAACTACTGACATAACTACTGACAGAACGACAGACGGAACAACTGACAGATGGGACAGGAGGTCCCAGCAGTCTCAGGATAGACTATCTGACTGTAAACTGTATTCTCCCgagttagaggtcaggggtcaggggtcgtgCTTAGATGTGCATTCTCCCGGAGCTAGTCTATGCTCCTTCAGTACATATGAACCTCGTCCtgacccaaccctaaacctaccctgacctctaacccctgactccTAACTATGTATGGTTAAGGATGGCAGGGCTACTTGTATTTCTGATGCACATATTTACCTGTTTATTTTGAGTTGATTGTTTTAGTCCTGCCTGTCTTTCCCACCAAGGACCAATTGGTGTTGGGGCCCAAATCTTACATTTATGATTGACTAATAAAGGCACACACCCAGAACTTGTCCTTTGGAATGAGCATGGGAACCCCTGTCCTCGGTCTGACGTGTCAGTCACTTCAGTTGGAAATAAGTGTTGTTGCTGTCATGTGTTTTTGTACTCTGTTGTCGGTTCTCTGTACAATGTTTTTATTCAAAATAAACCAATCAGATGTTCTCTACCATGTTTctattaaaaaataaacaaatca
>XM_036967178.1
TATAACGCAGAGAAACAGACCTGGACTGCGAGATACAGACACTAGCAACTAGAGAAACAGACACACCTGGACTGGGAGATCCAGACACTAGCAACTAGAGAAACATACACACCTGGACTGGGAGATCCAGACACTAGCAACTAGAGAAACATACACACCTGGACTGGGACGCTTCTGACCTGGGAAAATTAGAAATCAATCAACTTCATGGACATTGTGTACTTCCGGGGACTGTAtgacatcaccatgacaacccTGTTATGACCGTAACAGGGTCAGAAATGGCCAATGAGATGCTGCCCTGCTCCGAGACAGGGCTGCAGTGTCCATGTTGTACAAATTGACCAGGTGAGATTGAGAGGGAGgtgtctccatggtgatgtgGCTTCAGTGTTCCATCTGTCTCTGGATCTTCCTCTGGCCTTCAGCAGggtgtctctccccccctcagaATGTGACTGTAGAGTTTCTGGACTTCCAAGGGAGAGTCCACTGGCTGGCCGGAGCTGGCAACACCAACCATACCCACTACTCTGTAGAGATTGGAGCACTCAGTGAGTCATGGTGGCAACCCTGTAACTGCAGCAACCCCGTTGCCATGGCGTGCCCCCTGGACATTCCGCTGGAGGACCTTTTAAAGAATTACAACGTCAGAGTGAGGGCGGAGCTGGAAGAGCAGACGTCAGACTGGAAATACCTGGAGAACACAGTACAGCCCTACTCAGACAcagtgTTGAGTGCCCCAAGTCTGGAGTTGTGGGTGGAGAACCAGAGTCTATGTGTCCAGCTTCACCATCCTGCTCAGAACATCTTCAAATTATACAACATCACACTGCTGAAGAATGTTCAGGAACACAACGCcacggTCATCAGAGATTGGTGGGCATGGCTGTGGGCGTGTTCCTGCTTCTGGCTGTTCTAATTGGTCTGATCGCTGTGACACGCTATGTCCTGAAGAGCACAGACCCCACCCCCACAGCTCTGtctgtgtgtgtgcg

Function

symbol description
ifnar1 Enables type I interferon receptor activity. Involved in positive regulation of cellular respiration and type I interferon signaling pathway. Is integral component of plasma membrane. Implicated in hepatitis C.

NR:

description
putative interferon-alpha/beta receptor alpha chain precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124415.1 False 2567 mRNA 0.49 8 47479567 47511404
XM_036967178.1 True 998 mRNA 0.52 7 47481006 47511434

Neighbor

gene id symbol gene type direction distance location
fdxacb1 LOC106594937 coding downstream 69934 47395688 ~ 47409633 (-)
btg4 btg4 coding downstream 138915 47337162 ~ 47340652 (-)
bud13 bud13 coding downstream 147938 47325408 ~ 47331629 (-)
birc2 LOC106563947 coding downstream 255373 47187549 ~ 47224194 (-)
ddias NA coding downstream 379325 47091773 ~ 47100242 (-)
si:dkey-71l1.1 LOC105005636 coding upstream 13983 47525417 ~ 47556917 (-)
G2189904 NA non-coding downstream 34977 47444063 ~ 47444590 (-)
G2189903 NA non-coding downstream 42118 47437072 ~ 47437449 (-)
G2189902 NA non-coding downstream 42998 47436242 ~ 47436569 (-)
G2189901 NA non-coding downstream 44147 47435169 ~ 47435420 (-)
G2189900 NA non-coding downstream 48072 47431119 ~ 47431495 (-)
G2189930 NA non-coding upstream 426 47511860 ~ 47512412 (-)
G2189931 NA non-coding upstream 2027 47513461 ~ 47513783 (-)
G2189932 NA non-coding upstream 2438 47513872 ~ 47514101 (-)
G2189935 NA non-coding upstream 4668 47516102 ~ 47516378 (-)
G2189936 NA non-coding upstream 5016 47516450 ~ 47516723 (-)
G2189898 NA other downstream 50971 47419934 ~ 47428596 (-)
G2189794 NA other downstream 192564 47285984 ~ 47287003 (-)
G2189814 NA other downstream 209085 47243049 ~ 47270482 (-)
G2189204 NA other downstream 709606 46769683 ~ 46769961 (-)
G2189115 NA other downstream 843399 46634238 ~ 46636168 (-)
G2189978 NA other upstream 91717 47603151 ~ 47604511 (-)

Expression


Co-expression Network