G2139197 (LOC106562832)


Basic Information

Item Value
gene id G2139197
gene name LOC106562832
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 313808 ~ 323834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2446739
GATGCATGTACATTTATTTGGGTTTTAAAATGGAACGGTATTAACATTCTCCCATCCTATTCCTAGAATATACCTCCATATCAAATAGCAAGTGCACAGCAGGTCCAGACCCTACCTGGTCTCCTGCAGCCACTGGTGGAATGCGTTGGCATGCTGAGCAAACTCCTGCCGCAGCTTGTCGTTCTCCTCCTGCCTTCTCTGCTCCTTCTGCAACTCTAGCTCTCGTTCAGGGCCTCCATGGTGAACCAGGTGTAGGGGTTGGACACCACCTGGTAACTCTTAATCTGCCGGTCCAGCTCAGCTAGCTGGTTGAAGTCGGCCTGCGCCGAGCTCAGCGACGAGCGGAAGGCCTCGTGGGCATCGCGCAGAGCCCGGATCTCCTCCAGCGAGTTGCAGCGCACCGGGTCCGTCAGGTCCTCCTCTGCATTCTCAAACCAGCTATTGAAGGCCGATGCCTTCTTGGCAAAGGTCAGGAACAGGTCttccacCTTCCTGAAGTGATCCTGGGCCTCCAGCAGCTTCTTCTTGCGAGCCTGTGAGTTGTCTAGCAGCTTGTTCCAGCGCTTCATGAGGGCGGCGTGGCGGGCCTCAATGGCCTTGGACTGGACGTGCTTTGCCGCCAGCAGCTGGTCCTTGAGGGCCGTGATGTTGGTTATGCCCTCCTGCTGGAAGGCCTGAAGACCAGCGTCAAACGTCTCCTGTTAGTGAGCAACGTCTGCACAGAGGAGAGATCTCGTCCGTAGTCATCAGTCTTCAGGCTGCAGCCAGGTCCTTCAGCTCCGTCCAGTGCTCCTCAAACTGGCCCAGCCTCTGCTCAATCTCCTCCTGGCCGATGGTGTTGTCATCAGACAGCTTCTTCCCAGTGTCCTGCACAGACTGGATGGCTGGCTCGTGGGCCCCCAGCTCAGCCTCCAGCCTCTTGTGTTTCTTCCTTAGATTCTGCACTCCTGTCAAATCACGTCCATAGTCTTCCGAACTCACCAGCAATTTCTTTTCTTTTATCCAAGACTCCTCATCGTCCAGGTCCCTGAAGAACTGGTGCAGGCGGTGAGATTCGTTGAGCTTGGCGCGGCGGCCGGCAGCCATGCTCTTGATCTTGGCGAAGCGTCCGTTGACGGCGTTGCGCTTGTCCTTGACCTGGGTGGGGTCGAAGGCTGTGCTGGCCGTCAGGCTGTCGGCCTGGCCGTTCAGGTCCTTCAGGCGATCCTGTAGACACACGGAAAGACATTCAACGCAAAGCACAAACCTGTACTGGTGGATATCTTTAGTGATTTGTACAAAAAAACATTAAAAGACAGACGTTATGTAAGAATTATAAGTTCAACCAGCGGTTTCAATGTCGTACCAAACTGAG
>TU2446747
TACCTTCCTGAAGTGATCCTGGGCCTCCAGCAGCTTCTTCTTGCGAGCCTGTGAGTTGTCTAGCAGCTTGTTCCAGCGCTTCATGAGGGCGGCGTGGCGGGCCTCAATGGCCTTGGACTGGACGTGCTTTGCCGCCAGCAGCTGGTCCTTGAGGGCCGTGATGTTGGTTATGCCCTCCTGCTGGAAGGCCTGAAGACCAGCGTCAAACGTCTCCTGTTAGTGAGCAACGTCTGCACAGAGGAGAGATCTCGTCCGTAGTCATCAGTCTTCAGGCTGTTCTCCTTCTCACCGATCCAGGACTCCACCACGTCGGCCTTCCAGTTGAACTGCAGGAAGGCAGAGTTCTCGTCCAGCTTGGCTTTCCTCATGGCAGCGGCCCTCTCCAGCTCAGACACCTTGCCCCGCAGGGACGTCATCTTGGCTGAGATGCTGTCCACGTGGTGGTTGTTCTTGTTGATGAGCTCGTCTCCGTTGGAACACACATCATTCACTCTGTCCCTGTGCACGGTGAAGTCAGTCTCAAAAGCCTCATGCTTCTTCAACAGGCCCTGCACGGCGGCCAGGGTATCCCCATAGTCTTCACTTCCCACCAGGTTCAGCTTCTCGTTAATCCAGGCTTCCTCCTCTTCAACATTCGCAACAAACTGCTGGTACTCCAGCGACTCCTCCAGCCTCTGTCCCCTgatcacacatacacaaaaaaataacattatCAATGAA
>TU2446743
gGTTAGGGGAAGCCCATAGAGATGCTGAAAGCCCTCTATGGCGCTACCGATTGCTATCAGTCTTTTGTGGCAAGTGTGCCCACAATCCATCTCTATGGTTCAGCCTTGAAACTCCAAGGATGGAACCTGTCATTGTGATATTCTTAGCCAATCCTGTACCTGGATGTTGGTGGGGTCCTTGTAGGACTCGTCGGTGGCCGTCTGCAGCTTCTCGCTGATCCAGGCCTCAATCTCATCCACATCACGGCTGAACTGCTGCAGGGTCTGGGACTCGCCCAGCTTGGAACGCTTCTCAATCATCTGGGCCTTCAGACGGCGCCACCTGTCCAGGACTTCGTTGCGACGTTTGGAGATCTCAGGCTTGGCGTAGTGGTCAGCGCCGACCAGCTGGTCAGCAAAGGACTGCAGGGCAGCGATCTTCTCCTCCTGCACATTGATGGCCTTGTCAAAGTCCTCGTGTTTCTTGATGAGGGCCTCCACGCTGTCCAGGGAGTCGCCCTTGTCGTCGCTGGCCAGGAAGGCCTCGCGCGCTGCCATCCAGTTCTCAGCCTGCTCACAGTCAC

Function

NR:

description
spectrin alpha chain, non-erythrocytic 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2446739 False 1354 lncRNA 0.55 6 313808 316761
TU2446747 False 720 lncRNA 0.55 4 314622 315808
TU2446743 True 563 lncRNA 0.57 2 323037 323834

Neighbor

gene id symbol gene type direction distance location
LOC110509488 set coding upstream 22782 287196 ~ 291026 (+)
LOC110509486 LOC106562830 coding upstream 164550 131779 ~ 149258 (+)
LOC110509485 LOC106562829 coding upstream 207009 71933 ~ 106799 (+)
LOC110509491 LOC106562835 coding downstream 114303 438137 ~ 444982 (+)
LOC110509495 LOC106562838 coding downstream 204233 528067 ~ 530098 (+)
LOC110509291 LOC106562839 coding downstream 212424 536258 ~ 614583 (+)
LOC100305272 dpm2 coding downstream 295955 619789 ~ 629216 (+)
LOC110509496 LOC106562840 coding downstream 308187 632021 ~ 650126 (+)
G2139206 NA non-coding upstream 68445 235734 ~ 245363 (+)
G2139162 NA non-coding upstream 111933 179954 ~ 201875 (+)
G2139089 NA non-coding upstream 269277 43223 ~ 44531 (+)
G2139267 NA non-coding downstream 28168 352002 ~ 360322 (+)
G2139281 pol3 non-coding downstream 54877 378711 ~ 378933 (+)
G2139328 NA non-coding downstream 135043 458877 ~ 531187 (+)
G2139362 NA non-coding downstream 278410 602244 ~ 602933 (+)
G2139145 NA other upstream 154975 158015 ~ 158833 (+)
G2139202 NA other downstream 532 324366 ~ 325048 (+)
G2139520 LOC106562868 other downstream 528415 852249 ~ 853787 (+)
LOC110509506 LOC106562870 other downstream 1082380 1271496 ~ 1429741 (+)
LOC110509295 LOC106562719 other downstream 1248713 1572502 ~ 1618684 (+)

Expression


Co-expression Network