G2139198 (LOC106562832)


Basic Information

Item Value
gene id G2139198
gene name LOC106562832
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 315974 ~ 332914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2446750
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgcacacacacacacacacacacaccttgttggTACTGTTGAGCAGGGTGAGGATGTCTCCCTTCTTCATGGTGACCTCACGGGGGCTCTTCTCCTGGTAGTCATAGAGGGCCAGCACCAGCTCCTTGCCAGTCTCATCATCGGTGGGCGCAACTTGTTGCCTGCAGGATTGGGCCTGCTCCTTCAAAGCCTGGATGCTGGTGCCATAAGCACTCAGGTCAGACATCAGGGCTTCGTGCTTCTTCAGCAGGGCCTCAGCCGAATCCTCATCCTTGCCGTAGTCGGGACTGCCCACGATGGGCTCTTTCTCCCTCATCCAGGACTCTGCCTCGTTGGCGTCGGCGAAGTACTGCTGTGCCTGCAATGAGTCCTCCAGGTCCTGCCTGCGCTGCCCGGCCTTGCCTTTCAGGGTGTCCCAGCGGCCGTTCAGCTCCCCCAGCTTCACCTTAACCTCCTCCCCAG
>TU2446749
ggggggggggttgggacaAAAACACCACACCAGTCAAAAGAGGAACCATATTAGCACCGCAGGGGGTAAAGACAGACCATGTCTTTACACTGTTGCCCAAAAGACAGCCAGCACCATCAACATGGCGATAGAAGACCAGCAGGCTCCAAACCACCACCATTACCATACATGCAGTGGAGACGGAGACTTAAGCGCTGACTAAGTTACTACAGCTCAAGGCAAAAGTTAATATTGGGTTTATGTGTAGGCTGCGTCAACAAAGATGCATATAATACCGTCTTCTAGCTAAATCCATCTATGGGTGTGTCAACATGTGTCTGCTATGTGTTTTCACCTGTTTTAGCTGTAATGAGAAAGTTTTTAAATAGGTCAAAATTACCATAACACATTTTTGTTTACCCAAAGAAATGAATACCTTATAAACAGGTAGCTAGTGTAAACAAGTAAACAGGTTCACTAGAGTAGCTAGTGAACAGCAGAGTACTTCTAAatattagaatagaatagaatagagagtaGAATATATTGAATGGTGAGTGGTAAGTGCCAGGTCTACCAtttgtaacagggttatattggtgattccccttgccactttattgttaagccaatgggtttttggtttgagtttgttttgccttcacctactcaacatggcatcttactggctggtttgcgtagcttgcttacgaggggggatgttccagttagaatcgtcccagtgaacaagcaccaaaccagcggtaagttgttggttgcaaagcactgtacatcaaaagtgatttttatactctcaagtgatgatttaaatgtaaaatttatatcaaattgtttgtaaatgttattcgaacatcacacataagatgcagcggtttttggagaatatttgttgtgcattttgttgtaaagaattcccgccagtactagctagcaacttactgtgtctggtggggggggggggttcatatattttgtacagtgcgtgagtgcagagttggatggtgagacgtgcattgcatgacgtgcaattttgtgccgTTCCTAACAGAATAAatctacatgactggtgctacatgttggagttccgtgtcgatgactgattgtacacaacgcaagacgaGTACTGTTACACATTCATTTCTTTATCTCTGGTTTGTTAACAAGTACTTCTTACATCAACTGATACAAGGTCCTATGTACAAGGCTGAATTACTGGGCATGAATCCAAGATTCAGGTTCATTTAAATACTTTTGACAGACAACATGCTGTCCAATCTTTTATGGAGGGGAAAAAAAAAAGACATGGTCACACTAAAAGGATATAGTTTGGGAGACAAAATGCTTTGTTTGGATATCCATGAGACTAAGTTGATTGGTCAAGACTTTCTTACCTTCCATGGTGAAGCATTTTTGGAATCGGTATCATCCTTGCCAGGAACGGAACCCACCATTACTTGTTCCTGAGCTTGGACCATGTGTGCCTCCTCTGCCATTAGGCCCTCAGACTCCAGCTCAGATGCCACCTTGTTGCCTGCAGGATTGGGCCTGCTCCTTCAAAGCCTGGATGCTGGTGCCATAAGCACTCAGGTCAGACATCAGGGCTTCGTGCTTCTTCAGCAGGGCCTCAGCCGAATCCTCATCCTTGCCGTAGTCGGGACTGCCCACGATGGGCTCTTTCTCCCTCATCCAGGACTCTGCCTCGTTGGCGTCGGCGAAGTACTGCTGTGCCTGCAATGAGTCCTCCAGGTCCTGCCTGCGCTGCCCGGCCTTGCCTTTCAGGGTGTCCCAGCGGCCGTTCAGCTCCCCCAGCTTCACCTTAACCTCCTCCCCAG
>TU2446748
TGTGCGGGGTACCTTCTGGAAGTCGTCAAACTTCTTCTGCAGCACCTCCACCTCCTCGTTGGTGAGGGCTCCCTCCTTCTCGTTGATCCACTGCTGCAGTTCGTTAGCCTCGCGGAACAGCATGAACTTCTTGCAGCTCTTTTCTAGCATGTCCTTGCGTTTCTCGCCCAGCTCCAGGAGAGTGCCGTACTGGTTCTCGATCTGGTCCTGGCGGAGGCCGATGCTGCCCTGCTCGTCCAGCAGGTTCTCCCTGGAGGAGGACTGGGTGGGGTCTAGCTTCTTGACGTAGGCTGCTGGCACAAAGCCCTGGCGGTCGTTCACCTCCACCTTCCACCAGTCcttgttggTACTGTTGAGCAGGGTGAGGATGTCTCCCTTCTTCATGGTGACCTCACGGGGGCTCTTCTCCTGGTAGTCATAGAGGGCCAGCACCAGCTCCTTGCCAGTCTCATCATCGGTGGGCGCAACTTGTTGCCTGCAGGATTGGGCCTGCTCCTTCAAAGCCTGGATGCTGGTGCCATAAGCACTCAGGTCAGACATCAGGGCTTCGTGCTTCTTCAGCAGGGCCTCAGCCGAATCCTCATCCTTGCCGTAGTCGGGACTGCCCACGATGGGCTCTTTCTCCCTCATCCAGGACTCTGCCTCGTTGGCGTCGGCGAAGTACTGCTGTGCCTGCAATGAGTCCTCCAGGTCCTGCCTGCGCTGCCCGGCCTTGCCTTTCAGGGTGTCCCAGCGGCCGTTCAGCTCCCCCAGCTTCACCTTAACCTCCTCCCCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2446750 False 504 lncRNA 0.59 4 315974 332914
TU2446749 False 1832 lncRNA 0.45 5 326777 332914
TU2446748 True 776 lncRNA 0.60 5 330842 332914

Neighbor

gene id symbol gene type direction distance location
LOC110509488 set coding upstream 24948 287196 ~ 291026 (+)
LOC110509486 LOC106562830 coding upstream 166716 131779 ~ 149258 (+)
LOC110509485 LOC106562829 coding upstream 209175 71933 ~ 106799 (+)
LOC110509491 LOC106562835 coding downstream 105223 438137 ~ 444982 (+)
LOC110509495 LOC106562838 coding downstream 195153 528067 ~ 530098 (+)
LOC110509291 LOC106562839 coding downstream 203344 536258 ~ 614583 (+)
LOC100305272 dpm2 coding downstream 286875 619789 ~ 629216 (+)
LOC110509496 LOC106562840 coding downstream 299107 632021 ~ 650126 (+)
G2139206 NA non-coding upstream 70611 235734 ~ 245363 (+)
G2139162 NA non-coding upstream 114099 179954 ~ 201875 (+)
G2139089 NA non-coding upstream 271443 43223 ~ 44531 (+)
G2139267 NA non-coding downstream 19088 352002 ~ 360322 (+)
G2139281 pol3 non-coding downstream 45797 378711 ~ 378933 (+)
G2139328 NA non-coding downstream 125963 458877 ~ 531187 (+)
G2139362 NA non-coding downstream 269330 602244 ~ 602933 (+)
G2139145 NA other upstream 157141 158015 ~ 158833 (+)
G2139520 LOC106562868 other downstream 519335 852249 ~ 853787 (+)
LOC110509506 LOC106562870 other downstream 1073300 1271496 ~ 1429741 (+)
LOC110509295 LOC106562719 other downstream 1239633 1572502 ~ 1618684 (+)
LOC110509554 LOC105007341 other downstream 1605470 1935597 ~ 1941376 (+)

Expression


Co-expression Network