G2139807 (LOC106602244)


Basic Information

Item Value
gene id G2139807
gene name LOC106602244
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 378211 ~ 378487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447427
GTGAAACGGTGCGAATGAAGCCACTACCAGGGGACCGGACGGGCCTCTGGAGACTCGGATCCTGTGTACAGAAAGTGGCACCACGCTCCTACTTGGTCGAAGTGAATGGATCACTGTACcgtcgtaacagggttgaccttcggaTTGCTGAGCCAGCACCTACTCAGAACCCTGATGGCCAAAGGGGTCGCATGACAAAAGACGGAACCCCAGCAAGTCACATGGGGCCTGAGGCACTGGGCGAAGAGCCAGGGGATCACAGGTCAGCCGCTCCCTC

Function

NR:

description
PREDICTED: C-type lectin domain family 4 member M-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447427 True 277 TUCP 0.58 1 378211 378487

Neighbor

gene id symbol gene type direction distance location
LOC110509489 LOC106562832 coding downstream 900 309563 ~ 377311 (-)
LOC110509487 LOC106570480 coding downstream 165187 168398 ~ 213024 (-)
LOC110509490 LOC106562833 coding upstream 20024 398511 ~ 425356 (-)
LOC110509492 LOC106562836 coding upstream 47240 425727 ~ 437447 (-)
LOC110509493 pkn3 coding upstream 67733 446220 ~ 456501 (-)
LOC110509494 LOC106562837 coding upstream 104139 482626 ~ 527732 (-)
LOC110509500 nup188 coding upstream 343482 721969 ~ 726945 (-)
G2139784 NA non-coding downstream 47487 330168 ~ 330724 (-)
G2139765 set non-coding downstream 84138 283933 ~ 294073 (-)
G2139683 LOC107576698 non-coding downstream 236121 141278 ~ 142090 (-)
G2139618 NA non-coding downstream 327178 39672 ~ 51033 (-)
G2139614 NA non-coding downstream 334218 28615 ~ 43993 (-)
G2139810 NA non-coding upstream 5131 383618 ~ 383838 (-)
G2139832 NA non-coding upstream 40568 419055 ~ 463228 (-)
G2139878 NA non-coding upstream 97632 476119 ~ 476800 (-)
LOC110509502 LOC106562868 other upstream 500432 843748 ~ 937986 (-)
G2141258 NA other upstream 1219534 1598021 ~ 1613209 (-)
G2141289 LOC100380853 other upstream 1270812 1649299 ~ 1649731 (-)

Expression

G2139807(LOC106602244) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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G2139807(LOC106602244) Expression in each Bioproject

Bar chart with 19 bars.
G2139807(LOC106602244) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network