G2139438


Basic Information

Item Value
gene id G2139438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 723083 ~ 723874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447021
ACAATTCTGTTTTTGACCACGGcctattgggctctggtcaaaagtagtgcactatgtagggaatagtgtgccattcggGATGCATCCTATGTAATTCCCTCTTCAGACAAATGCCTTTATGTCTTCAACTGAAAATGCACGTGCTGTGGGGAACTGAACCCAGAGACACAGAATGTGACCCGTAACCCAGTGACCAACTGCATCCCGTTCAGACTCATCATCACTTAGGTAATTTAGCCATTTTATATCAATGCTTTTATGTCATGTGccgcatcctaaatggcaccattTGCAGCCATGTTGTGgatgtgtgttacctgtgaggcTCCATTGGAGGGCACTGCATAGGCACTgagcagagggagacagatgcTCTGGATGACGCTGGCCCCGGCTACTGCTGCTGCCCCCTGGAGGACAGGGCACAGAACATGCTCAATGGCTGAAACACAGAGTACATTTTCATGTTTAAATAGGTTTGTCTTTGCAGAATAGATAATGATATCTAATAATATTACATCTAAGTCTTTCTACAGTACTCAACATTGTGCTATTGGGGTGTGACAATTGGTGTCCTTCTGTACCTGTGGTGGGTGggtgaatgagagagacagacaaagtgTGTTCCTGTGGTGGGTGTGTAATAGAGAAAGACCAACATGTTTTCTTTTAGGGCCTCTACCAATTTTTGGGGGACCAAGGAAGCCGATGGACGATATTTTATGGCGATattcaatatcattacatttaaaaatgttaGTAAACATCTTCCAGAGACATCCATATATGCAT

Function

NR:

description
nucleoporin NUP188 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447021 True 792 lncRNA 0.44 1 723083 723874

Neighbor

gene id symbol gene type direction distance location
LOC110509499 LOC106562841 coding upstream 19257 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 28735 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 72957 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 94086 619789 ~ 629216 (+)
LOC110509291 LOC106562839 coding upstream 108500 536258 ~ 614583 (+)
LOC110509503 LOC106562869 coding downstream 111954 835828 ~ 844013 (+)
LOC110509506 LOC106562870 coding downstream 547622 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 795542 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 830751 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 848628 1572502 ~ 1618684 (+)
G2139437 NA non-coding upstream 2156 720611 ~ 720927 (+)
G2139436 NA non-coding upstream 4537 718303 ~ 718546 (+)
G2139362 NA non-coding upstream 120150 602244 ~ 602933 (+)
G2139328 NA non-coding upstream 191896 458877 ~ 531187 (+)
G2139439 NA non-coding downstream 164 724038 ~ 724393 (+)
G2139512 NA non-coding downstream 102913 826787 ~ 827022 (+)
G2139515 NA non-coding downstream 109948 833822 ~ 834167 (+)
G2139464 NA non-coding downstream 122202 846076 ~ 846659 (+)
G2139528 NA non-coding downstream 135655 859529 ~ 859842 (+)
G2139202 NA other upstream 398035 324366 ~ 325048 (+)
G2139145 NA other upstream 564250 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 573830 131779 ~ 149258 (+)
G2139520 LOC106562868 other downstream 128375 852249 ~ 853787 (+)
LOC110509554 LOC105007341 other downstream 1214510 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2359343 3083217 ~ 3083571 (+)

Expression


Co-expression Network