Gene
RNA
| Item | Value |
|---|---|
| gene id | G2139520 |
| gene name | LOC106562868 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 852249 ~ 853787 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| rap guanine nucleotide exchange factor 1-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2447110 | True | 1015 | TUCP | 0.49 | 3 | 852249 | 853787 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509503 | LOC106562869 | coding | upstream | 8236 | 835828 ~ 844013 (+) |
| LOC110509499 | LOC106562841 | coding | upstream | 148423 | 694527 ~ 703826 (+) |
| LOC110509498 | LOC106562841 | coding | upstream | 157901 | 691741 ~ 694348 (+) |
| LOC110509496 | LOC106562840 | coding | upstream | 202123 | 632021 ~ 650126 (+) |
| LOC100305272 | dpm2 | coding | upstream | 223252 | 619789 ~ 629216 (+) |
| LOC110509506 | LOC106562870 | coding | downstream | 417709 | 1271496 ~ 1429741 (+) |
| LOC110509509 | LOC106562874 | coding | downstream | 665629 | 1519416 ~ 1532574 (+) |
| LOC110509512 | LOC106562877 | coding | downstream | 700838 | 1554625 ~ 1558840 (+) |
| LOC110509295 | LOC106562719 | coding | downstream | 718715 | 1572502 ~ 1618684 (+) |
| LOC110509513 | LOC106562718 | coding | downstream | 800805 | 1654592 ~ 1662205 (+) |
| G2139464 | NA | non-coding | upstream | 5590 | 846076 ~ 846659 (+) |
| G2139515 | NA | non-coding | upstream | 18082 | 833822 ~ 834167 (+) |
| G2139512 | NA | non-coding | upstream | 25227 | 826787 ~ 827022 (+) |
| G2139439 | NA | non-coding | upstream | 127856 | 724038 ~ 724393 (+) |
| G2139438 | NA | non-coding | upstream | 128375 | 723083 ~ 723874 (+) |
| G2139528 | NA | non-coding | downstream | 5742 | 859529 ~ 859842 (+) |
| G2140158 | NA | non-coding | downstream | 113511 | 967298 ~ 968022 (+) |
| G2140165 | NA | non-coding | downstream | 117785 | 971572 ~ 972394 (+) |
| G2140166 | NA | non-coding | downstream | 118729 | 972516 ~ 972774 (+) |
| G2140185 | NA | non-coding | downstream | 142815 | 996602 ~ 996829 (+) |
| LOC110509291 | LOC106562839 | other | upstream | 261445 | 536258 ~ 614583 (+) |
| G2139202 | NA | other | upstream | 527201 | 324366 ~ 325048 (+) |
| G2139145 | NA | other | upstream | 693416 | 158015 ~ 158833 (+) |
| LOC110509486 | LOC106562830 | other | upstream | 702996 | 131779 ~ 149258 (+) |
| LOC110509554 | LOC105007341 | other | downstream | 1084597 | 1935597 ~ 1941376 (+) |
| G2142277 | NA | other | downstream | 2229430 | 3083217 ~ 3083571 (+) |
| G2142386 | LOC106562824 | other | downstream | 2465162 | 3318949 ~ 3324094 (+) |
