G2140165


Basic Information

Item Value
gene id G2140165
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 971572 ~ 972394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2447829
tacagagccacgagtgcatggaactcccttccatcttatatacagtataatacagagccatgagtgcatggaactcccttctatcttatatacagtataatacagagccatgagggCATAAAATCCCCttcttgtcatgtattgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttttgtttctgtctttgtcggattcttgtttgtgttattcatgcctgaaccagactatcgtcatgtttgctgcaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctacgtatgttttgttattaaagaagccctgtttacgttagttcgcttttgggtcctcattcacgcaccttaacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgtcgagatccagggagcgatgctaggcagacacgagcaggaattgtctgctgctcgacatgccgttgagaccctggccacccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccaccggccacttccagggctttcgaatctccggagcccagaatcaataacccgccgtgttactctggggagcccactgaatgccgctcgttcctcacccagtgtgatattgtgttttctctccagcc

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2447829 True 823 lncRNA 0.49 1 971572 972394

Neighbor

gene id symbol gene type direction distance location
LOC110509503 LOC106562869 coding upstream 127559 835828 ~ 844013 (+)
LOC110509499 LOC106562841 coding upstream 267746 694527 ~ 703826 (+)
LOC110509498 LOC106562841 coding upstream 277224 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 321446 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 342575 619789 ~ 629216 (+)
LOC110509506 LOC106562870 coding downstream 299102 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 547022 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 582231 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 600108 1572502 ~ 1618684 (+)
LOC110509513 LOC106562718 coding downstream 682198 1654592 ~ 1662205 (+)
G2140158 NA non-coding upstream 3550 967298 ~ 968022 (+)
G2139528 NA non-coding upstream 111730 859529 ~ 859842 (+)
G2139464 NA non-coding upstream 124913 846076 ~ 846659 (+)
G2139515 NA non-coding upstream 137405 833822 ~ 834167 (+)
G2139512 NA non-coding upstream 144550 826787 ~ 827022 (+)
G2140166 NA non-coding downstream 122 972516 ~ 972774 (+)
G2140185 NA non-coding downstream 24208 996602 ~ 996829 (+)
G2140190 NA non-coding downstream 32574 1004968 ~ 1057478 (+)
G2140191 NA non-coding downstream 42722 1015116 ~ 1033840 (+)
G2140207 NA non-coding downstream 97061 1069455 ~ 1069900 (+)
G2139520 LOC106562868 other upstream 117785 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 380768 536258 ~ 614583 (+)
G2139202 NA other upstream 646524 324366 ~ 325048 (+)
G2139145 NA other upstream 812739 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 822319 131779 ~ 149258 (+)
LOC110509554 LOC105007341 other downstream 965990 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2110823 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 2346555 3318949 ~ 3324094 (+)

Expression


Co-expression Network